Rh7DG016400

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013502
Physical Location & Seq
Forward (+)
1351899 .. 1353843
1945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG016400.1

Sequence Viewer

Length: 756 bp
ATGGCTCCAATATTGCTGAGGCCTAGCCTCACTCTCCTGCTCTCCACTCTCCTATTTGCCCACATTATTGTTGATGTCTCCGCCACCACAATGACCTTCATCAACAAATGCACCCACCCGGTCTGGCCCGGCATTCAGCCCAGCGCCGGCCAGCCCATCCTCGCCAAAGGCGGCTTCGCTCTCCCGCCCAACAAGGCCTCCACCCTCCACCTCCCTCCTCTCTGGTCCGGCCGCTTCTGGGGCCGCCACGGCTGCTCCTTCGACGCCTCCGGCCGAGGCCGCTGCGCCACCGGCGACTGCGGCGGCAACCTCTTCTGCTCCGGCCTGGGCGGCACTCCTCCCGCCACCCTCGCCGAAATCACCCTCGGCAACGAGCAAGACTTCTACGATGTCAGCCTGGTCGATGGATATAACCTCGCCATCTCCATCACTCCCTACAAAGGCTCCGGCAAGTGCAGCTACGCCGGCTGCGTCAGCGACCTGAACATGATGTGTCCGGTAGGGCTACAAGTCCGGTCACACGACAACCGGCGAGTGGTGGCCTGTAAAAGCGCTTGCTCGGCGTTCAACTCGCCTCGGTATTGCTGCACCGGAAGCTTCGGGAGCCCTCAGTCGTGTAAGCCGACGGCGTATTCCCGGATCTTCAAGACGGCTTGCCCGAGAGCTTATTCTTATGCTTATGATGATCCCACCAGCATTGCTACATGCACCCGCGGAAACTATTTGGTCACCTTCTGCCCTCACCGCCGTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

251

Amino Acids

26.91

Weight (kDa)

9.03

Isoelectric Point (pI)

57.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 35 - 247 1.1e-82 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18250 AT1G18250
fragaria_vesca FvH4_5g17260
malus_domestica MD06G1231200.v1.1 MD13G1184600.v1.1
prunus_persica Prupe.5G232500_v2.0.a1
pyrus_communis pycom06g20250
rosa_chinensis RchiOBHm_Chr7g0178521
rosa_laevigata RLG00000005440
rosa_multiflora Rmu_sc0002421.1_g000003 Rmu_sc0016060.1_g000004
rosa_roxburghii Rroxscaffold_3G00274840
rosa_rugosa Rorug06G0417800
rosa_samantha Rh7AG016300 Rh7BG015800 Rh7CG016500 Rh7DG016400
rosa_wichuraiana Rw7G001290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 714
AclWI GGATC 2 cut(s) 647, 680
AcoI YGGCCR 3 cut(s) 148, 229, 271
AcyI GRCGYC 1 cut(s) 264
AfeI AGCGCT 1 cut(s) 553
AfiI CCNNNNNNNGG 4 cut(s) 146, 238, 440, 535
AgsI TTSAA 2 cut(s) 568, 646
AjnI CCWGG 2 cut(s) 324, 396
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AluBI AGCT 3 cut(s) 459, 597, 665
AluI AGCT 3 cut(s) 459, 597, 665
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 2 cut(s) 647, 680
Ama87I CYCGRG 1 cut(s) 658
Aor51HI AGCGCT 1 cut(s) 553
ApeKI GCWGC 5 cut(s) 252, 282, 456, 468, 585
AspLEI GCGC 3 cut(s) 146, 287, 554
AspS9I GGNCC 3 cut(s) 126, 225, 241
AsuC2I CCSGG 3 cut(s) 119, 129, 637
AsuHPI GGTGA 3 cut(s) 352, 721, 734
AvaI CYCGRG 1 cut(s) 658
AvaII GGWCC 1 cut(s) 225
BanII GRGCYC 1 cut(s) 608
BbvCI CCTCAGC 1 cut(s) 17
BbvI GCAGC 5 cut(s) 239, 269, 455, 468, 572
BccI CCATC 4 cut(s) 164, 398, 428, 434
BceAI ACGGC 4 cut(s) 265, 642, 666, 732
BcgI CGANNNNNNTGC 2 cut(s) 264, 298
BciT130I CCWGG 2 cut(s) 326, 398
BcnI CCSGG 3 cut(s) 119, 129, 637
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 1 cut(s) 24
BfoI RGCGCY 2 cut(s) 147, 555
BglI GCCNNNNNGGC 2 cut(s) 249, 330
Bme1390I CCNGG 5 cut(s) 119, 129, 326, 398, 637
Bme18I GGWCC 1 cut(s) 225
BmeT110I CYCGRG 1 cut(s) 658
BmgT120I GGNCC 3 cut(s) 126, 225, 241
BmiI GGNNCC 4 cut(s) 6, 242, 445, 605
BmrFI CCNGG 5 cut(s) 119, 129, 326, 398, 637
Bpu10I CCTNAGC 1 cut(s) 17
BpuMI CCSGG 3 cut(s) 119, 129, 637
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 6 cut(s) 247, 274, 325, 364, 575, 712
BsaWI WCCGGW 3 cut(s) 496, 513, 590
BsaXI ACNNNNNCTCC 6 cut(s) 182, 212, 239, 269, 428, 458
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 238, 440, 535
Bse118I RCCGGY 4 cut(s) 146, 290, 464, 528
Bse3DI GCAATG 1 cut(s) 696
BseBI CCWGG 2 cut(s) 326, 398
BseDI CCNNGG 6 cut(s) 247, 274, 325, 364, 575, 712
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 4 cut(s) 146, 238, 440, 535
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 2 cut(s) 8, 623
BseRI GAGGAG 2 cut(s) 207, 327
BseX3I CGGCCG 2 cut(s) 229, 271
BseXI GCAGC 5 cut(s) 239, 269, 455, 468, 572
BseYI CCCAGC 1 cut(s) 140
BsgI GTGCAG 2 cut(s) 475, 571
Bsh1236I CGCG 1 cut(s) 714
Bsh1285I CGRYCG 2 cut(s) 232, 274
BsiEI CGRYCG 2 cut(s) 232, 274
BsiHKCI CYCGRG 1 cut(s) 658
BslI CCNNNNNNNGG 4 cut(s) 146, 238, 440, 535
BsmAI GTCTC 1 cut(s) 82
BsmI GAATGC 1 cut(s) 132
BsoBI CYCGRG 1 cut(s) 658
Bsp1286I GDGCHC 1 cut(s) 608
Bsp143I GATC 2 cut(s) 639, 685
BspCNI CTCAG 2 cut(s) 9, 622
BspFNI CGCG 1 cut(s) 714
BspLI GGNNCC 4 cut(s) 6, 242, 445, 605
BspPI GGATC 2 cut(s) 647, 680
BsrDI GCAATG 1 cut(s) 696
BsrFI RCCGGY 4 cut(s) 146, 290, 464, 528
BssAI RCCGGY 4 cut(s) 146, 290, 464, 528
BssECI CCNNGG 6 cut(s) 247, 274, 325, 364, 575, 712
BssMI GATC 2 cut(s) 639, 685
BssNI GRCGYC 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 326, 398
Bst6I CTCTTC 1 cut(s) 317
BstACI GRCGYC 1 cut(s) 264
BstC8I GCNNGC 5 cut(s) 148, 152, 466, 556, 655
BstDEI CTNAG 2 cut(s) 17, 609
BstDSI CCRYGG 2 cut(s) 247, 712
BstEII GGTNACC 1 cut(s) 727
BstF5I GGATG 1 cut(s) 156
BstFNI CGCG 1 cut(s) 714
BstH2I RGCGCY 2 cut(s) 147, 555
BstHHI GCGC 3 cut(s) 146, 287, 554
BstKTI GATC 2 cut(s) 642, 688
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 2 cut(s) 639, 685
BstMCI CGRYCG 2 cut(s) 232, 274
BstNI CCWGG 2 cut(s) 326, 398
BstNSI RCATGY 1 cut(s) 708
BstPI GGTNACC 1 cut(s) 727
BstSCI CCNGG 5 cut(s) 117, 127, 324, 396, 635
BstUI CGCG 1 cut(s) 714
BstV1I GCAGC 5 cut(s) 239, 269, 455, 468, 572
BstX2I RGATCY 1 cut(s) 639
BstYI RGATCY 1 cut(s) 639
BstZI CGGCCG 2 cut(s) 229, 271
BtgI CCRYGG 2 cut(s) 247, 712
BtsCI GGATG 1 cut(s) 156
Cac8I GCNNGC 5 cut(s) 148, 152, 466, 556, 655
CfoI GCGC 3 cut(s) 146, 287, 554
Cfr10I RCCGGY 4 cut(s) 146, 290, 464, 528
Cfr13I GGNCC 3 cut(s) 126, 225, 241
Cfr42I CCGCGG 1 cut(s) 715
CseI GACGC 2 cut(s) 272, 460
CspCI CAANNNNNGTGG 2 cut(s) 679, 714
CviAII CATG 2 cut(s) 487, 705
DdeI CTNAG 2 cut(s) 17, 609
DpnI GATC 2 cut(s) 641, 687
DpnII GATC 2 cut(s) 639, 685
EaeI YGGCCR 3 cut(s) 148, 229, 271
EagI CGGCCG 2 cut(s) 229, 271
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
EciI GGCGGA 1 cut(s) 70
EclXI CGGCCG 2 cut(s) 229, 271
Eco147I AGGCCT 2 cut(s) 22, 197
Eco24I GRGCYC 1 cut(s) 608
Eco47I GGWCC 1 cut(s) 225
Eco47III AGCGCT 1 cut(s) 553
Eco52I CGGCCG 2 cut(s) 229, 271
Eco88I CYCGRG 1 cut(s) 658
Eco91I GGTNACC 1 cut(s) 727
EcoO65I GGTNACC 1 cut(s) 727
EcoRII CCWGG 2 cut(s) 324, 396
EcoT38I GRGCYC 1 cut(s) 608
FaeI CATG 2 cut(s) 490, 708
FaiI YATR 5 cut(s) 411, 488, 675, 681, 706
FatI CATG 2 cut(s) 486, 704
FauI CCCGC 3 cut(s) 192, 349, 719
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 608
FspBI CTAG 1 cut(s) 24
GlaI GCGC 3 cut(s) 145, 286, 553
GsaI CCCAGC 1 cut(s) 144
HaeII RGCGCY 2 cut(s) 147, 555
HgaI GACGC 2 cut(s) 272, 460
HhaI GCGC 3 cut(s) 146, 287, 554
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 2 cut(s) 490, 708
Hin6I GCGC 3 cut(s) 144, 285, 552
HinP1I GCGC 3 cut(s) 144, 285, 552
HindIII AAGCTT 1 cut(s) 595
HphI GGTGA 3 cut(s) 352, 721, 734
Hpy188III TCNNGA 2 cut(s) 601, 646
Hpy99I CGWCG 3 cut(s) 266, 628, 753
HpyAV CCTTC 3 cut(s) 106, 268, 742
HpyCH4V TGCA 4 cut(s) 111, 456, 588, 708
HpyF3I CTNAG 2 cut(s) 17, 609
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 2 cut(s) 490, 708
HspAI GCGC 3 cut(s) 144, 285, 552
KroI GCCGGC 2 cut(s) 146, 464
KroNI GCCGGC 2 cut(s) 148, 466
KspI CCGCGG 1 cut(s) 715
Kzo9I GATC 2 cut(s) 639, 685
LmnI GCTCC 5 cut(s) 10, 260, 323, 449, 603
Lsp1109I GCAGC 5 cut(s) 239, 269, 455, 468, 572
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 516, 727
MalI GATC 2 cut(s) 641, 687
MboI GATC 2 cut(s) 639, 685
MboII GAAGA 2 cut(s) 304, 634
MflI RGATCY 1 cut(s) 639
MhlI GDGCHC 1 cut(s) 608
MroNI GCCGGC 2 cut(s) 146, 464
MslI CAYNNNNRTG 1 cut(s) 89
MspA1I CMGCKG 2 cut(s) 282, 714
MspR9I CCNGG 5 cut(s) 119, 129, 326, 398, 637
Mva1269I GAATGC 1 cut(s) 132
MvaI CCWGG 2 cut(s) 326, 398
MvnI CGCG 1 cut(s) 714
NaeI GCCGGC 2 cut(s) 148, 466
NciI CCSGG 3 cut(s) 119, 129, 637
NdeII GATC 2 cut(s) 639, 685
NgoMIV GCCGGC 2 cut(s) 146, 464
NlaIII CATG 2 cut(s) 490, 708
NlaIV GGNNCC 4 cut(s) 6, 242, 445, 605
NmeAIII GCCGAG 3 cut(s) 299, 345, 539
NmuCI GTSAC 2 cut(s) 516, 727
NspI RCATGY 1 cut(s) 708
PceI AGGCCT 2 cut(s) 22, 197
PcsI WCGNNNNNNNCGW 3 cut(s) 468, 620, 656
PctI GAATGC 1 cut(s) 132
PdiI GCCGGC 2 cut(s) 148, 466
PfoI TCCNGGA 1 cut(s) 635
Psp6I CCWGG 2 cut(s) 324, 396
PspEI GGTNACC 1 cut(s) 727
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 2 cut(s) 324, 396
PspN4I GGNNCC 4 cut(s) 6, 242, 445, 605
PspPI GGNCC 3 cut(s) 126, 225, 241
PsuI RGATCY 1 cut(s) 639
RseI CAYNNNNRTG 1 cut(s) 89
SacII CCGCGG 1 cut(s) 715
Sau3AI GATC 2 cut(s) 639, 685
Sau96I GGNCC 3 cut(s) 126, 225, 241
ScrFI CCNGG 5 cut(s) 119, 129, 326, 398, 637
SduI GDGCHC 1 cut(s) 608
SetI ASST 9 cut(s) 98, 213, 312, 417, 461, 483, 599, 667, 734
Sfr303I CCGCGG 1 cut(s) 715
SgrAI CRCCGGYG 1 cut(s) 290
SgrBI CCGCGG 1 cut(s) 715
SinI GGWCC 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 89
SseBI AGGCCT 2 cut(s) 22, 197
SspI AATATT 1 cut(s) 12
SspMI CTAG 1 cut(s) 24
StuI AGGCCT 2 cut(s) 22, 197
StyD4I CCNGG 5 cut(s) 117, 127, 324, 396, 635
TaqI TCGA 2 cut(s) 261, 402
TauI GCSGC 7 cut(s) 174, 234, 246, 282, 303, 306, 333
TseFI GTSAC 2 cut(s) 516, 727
TseI GCWGC 5 cut(s) 252, 282, 456, 468, 585
Tsp45I GTSAC 2 cut(s) 516, 727
TspDTI ATGAA 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 225
XceI RCATGY 1 cut(s) 708
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.