RLG00000005440

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013502
Physical Location & Seq
Reverse (-)
67641830 .. 67642683
854 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005440

Sequence Viewer

Length: 753 bp
ATGGCTCCAACGCTGAGGCCTAGCCTCACTCTCCTGCTCTCCACTCTCCTATTTGCCCACATTATTGTTGATGTCTCCGCCACCACAATGACCTTCATCAACAAATGCACCCACCCCGTCTGGCCCGGCATTCAGCCCAGCGCCGGCCAGCCCATCCTCGCCAAAGGCGGCTTCGCTCTCCCACCCAACAAGGCCTCCACTCTCCACCTCCCTCCTCTCTGGTCCGGCCGCTTCTGGGGCCGCCACGGCTGCGCCTTCGACGCCTCCGGCCGCGGCCGCTGCGCCACAGGCGACTGCGGCGGCAACCTCTTCTGCTCCGGCCTCGGCGGCACCCCTCCCGCCACCCTCGCCGAAATCACCCTCGGCAACGAGCAGGACTTCTACGATGTCAGCCTGGTCGACGGATATAACCTCGCCATCTCCATCACTCCCTACAAAGGCTCCGGCAAGTGCAGCTACGCCGGCTGCGTCAGCGACCTGAACATGATGTGTCCGGTAGGGCTACAAGTCCGGTCACACGACAACCGGCGAGTGGTGGCCTGTAAAAGCGCTTGCTCGGCGTTCAACTCTCCTCGGTATTGCTGCACCGGGAGCTTCGGGAGCCCTCAGTCGTGTAAGCCGACGGCGTATTCCCGGATCTTCAAGACGGCATGCCCGAGAGCTTATTCTTATGCTTATGATGATCCCACCAGCATTGCTACATGCACCCGCGGAAACTATCTGGTCACCTTCTGCCCTCACCACCGTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

251

Amino Acids

26.75

Weight (kDa)

8.95

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 34 - 246 2e-82 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18250 AT1G18250
fragaria_vesca FvH4_5g17260
malus_domestica MD06G1231200.v1.1 MD13G1184600.v1.1
prunus_persica Prupe.5G232500_v2.0.a1
pyrus_communis pycom06g20250
rosa_chinensis RchiOBHm_Chr7g0178521
rosa_laevigata RLG00000005440
rosa_multiflora Rmu_sc0002421.1_g000003 Rmu_sc0016060.1_g000004
rosa_roxburghii Rroxscaffold_3G00274840
rosa_rugosa Rorug06G0417800
rosa_samantha Rh7AG016300 Rh7BG015800 Rh7CG016500 Rh7DG016400
rosa_wichuraiana Rw7G001290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 329
AccI GTMKAC 1 cut(s) 399
AccII CGCG 2 cut(s) 273, 711
AclWI GGATC 2 cut(s) 644, 677
AcoI YGGCCR 4 cut(s) 145, 226, 268, 274
AcyI GRCGYC 1 cut(s) 261
AfeI AGCGCT 1 cut(s) 550
AfiI CCNNNNNNNGG 4 cut(s) 143, 235, 437, 532
AgsI TTSAA 2 cut(s) 565, 643
AjnI CCWGG 1 cut(s) 393
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 3 cut(s) 456, 594, 662
AluI AGCT 3 cut(s) 456, 594, 662
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 2 cut(s) 644, 677
Ama87I CYCGRG 1 cut(s) 655
Aor51HI AGCGCT 1 cut(s) 550
ApeKI GCWGC 5 cut(s) 249, 279, 453, 465, 582
AspLEI GCGC 4 cut(s) 143, 254, 284, 551
AspS9I GGNCC 3 cut(s) 123, 222, 238
AsuC2I CCSGG 3 cut(s) 126, 589, 634
AsuHPI GGTGA 3 cut(s) 349, 718, 731
AvaI CYCGRG 1 cut(s) 655
AvaII GGWCC 1 cut(s) 222
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 605
BbvCI CCTCAGC 1 cut(s) 14
BbvI GCAGC 5 cut(s) 236, 266, 452, 465, 569
BccI CCATC 3 cut(s) 161, 425, 431
BceAI ACGGC 3 cut(s) 262, 639, 663
BciT130I CCWGG 1 cut(s) 395
BcnI CCSGG 3 cut(s) 126, 589, 634
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 1 cut(s) 21
BfoI RGCGCY 2 cut(s) 144, 552
BglI GCCNNNNNGGC 2 cut(s) 246, 327
Bme1390I CCNGG 4 cut(s) 126, 395, 589, 634
Bme18I GGWCC 1 cut(s) 222
BmeT110I CYCGRG 1 cut(s) 655
BmgT120I GGNCC 3 cut(s) 123, 222, 238
BmiI GGNNCC 5 cut(s) 6, 239, 331, 442, 602
BmrFI CCNGG 4 cut(s) 126, 395, 589, 634
Bpu10I CCTNAGC 1 cut(s) 14
BpuMI CCSGG 3 cut(s) 126, 589, 634
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 6 cut(s) 244, 271, 322, 361, 572, 709
BsaWI WCCGGW 2 cut(s) 493, 510
BsaXI ACNNNNNCTCC 4 cut(s) 179, 209, 425, 455
Bsc4I CCNNNNNNNGG 4 cut(s) 143, 235, 437, 532
Bse118I RCCGGY 3 cut(s) 143, 461, 525
Bse3DI GCAATG 1 cut(s) 693
BseBI CCWGG 1 cut(s) 395
BseDI CCNNGG 6 cut(s) 244, 271, 322, 361, 572, 709
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 4 cut(s) 143, 235, 437, 532
BseMI GCAATG 1 cut(s) 693
BseMII CTCAG 2 cut(s) 5, 620
BseRI GAGGAG 2 cut(s) 204, 561
BseX3I CGGCCG 3 cut(s) 226, 268, 274
BseXI GCAGC 5 cut(s) 236, 266, 452, 465, 569
BseYI CCCAGC 1 cut(s) 137
BsgI GTGCAG 2 cut(s) 472, 568
Bsh1236I CGCG 2 cut(s) 273, 711
Bsh1285I CGRYCG 3 cut(s) 229, 271, 277
BshNI GGYRCC 1 cut(s) 329
BsiEI CGRYCG 3 cut(s) 229, 271, 277
BsiHKCI CYCGRG 1 cut(s) 655
BslI CCNNNNNNNGG 4 cut(s) 143, 235, 437, 532
BsmAI GTCTC 1 cut(s) 79
BsmI GAATGC 1 cut(s) 129
BsoBI CYCGRG 1 cut(s) 655
Bsp1286I GDGCHC 1 cut(s) 605
Bsp143I GATC 2 cut(s) 636, 682
BspCNI CTCAG 2 cut(s) 6, 619
BspFNI CGCG 2 cut(s) 273, 711
BspLI GGNNCC 5 cut(s) 6, 239, 331, 442, 602
BspPI GGATC 2 cut(s) 644, 677
BspT107I GGYRCC 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 693
BsrFI RCCGGY 3 cut(s) 143, 461, 525
BssAI RCCGGY 3 cut(s) 143, 461, 525
BssECI CCNNGG 6 cut(s) 244, 271, 322, 361, 572, 709
BssMI GATC 2 cut(s) 636, 682
BssNI GRCGYC 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 1 cut(s) 746
Bst6I CTCTTC 1 cut(s) 314
BstACI GRCGYC 1 cut(s) 261
BstC8I GCNNGC 5 cut(s) 145, 149, 463, 553, 652
BstDEI CTNAG 2 cut(s) 14, 606
BstDSI CCRYGG 3 cut(s) 244, 271, 709
BstEII GGTNACC 1 cut(s) 724
BstF5I GGATG 1 cut(s) 153
BstFNI CGCG 2 cut(s) 273, 711
BstH2I RGCGCY 2 cut(s) 144, 552
BstHHI GCGC 4 cut(s) 143, 254, 284, 551
BstKTI GATC 2 cut(s) 639, 685
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 2 cut(s) 636, 682
BstMCI CGRYCG 3 cut(s) 229, 271, 277
BstNI CCWGG 1 cut(s) 395
BstNSI RCATGY 2 cut(s) 654, 705
BstPI GGTNACC 1 cut(s) 724
BstSCI CCNGG 4 cut(s) 124, 393, 587, 632
BstUI CGCG 2 cut(s) 273, 711
BstV1I GCAGC 5 cut(s) 236, 266, 452, 465, 569
BstX2I RGATCY 1 cut(s) 636
BstYI RGATCY 1 cut(s) 636
BstZI CGGCCG 3 cut(s) 226, 268, 274
BtgI CCRYGG 3 cut(s) 244, 271, 709
BtsCI GGATG 1 cut(s) 153
Cac8I GCNNGC 5 cut(s) 145, 149, 463, 553, 652
CciNI GCGGCCGC 1 cut(s) 274
CfoI GCGC 4 cut(s) 143, 254, 284, 551
Cfr10I RCCGGY 3 cut(s) 143, 461, 525
Cfr13I GGNCC 3 cut(s) 123, 222, 238
Cfr42I CCGCGG 2 cut(s) 274, 712
CseI GACGC 2 cut(s) 269, 457
CspCI CAANNNNNGTGG 3 cut(s) 676, 711, 731
CviAII CATG 3 cut(s) 484, 651, 702
DdeI CTNAG 2 cut(s) 14, 606
DpnI GATC 2 cut(s) 638, 684
DpnII GATC 2 cut(s) 636, 682
EaeI YGGCCR 4 cut(s) 145, 226, 268, 274
EagI CGGCCG 3 cut(s) 226, 268, 274
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
EciI GGCGGA 1 cut(s) 67
EclXI CGGCCG 3 cut(s) 226, 268, 274
Eco147I AGGCCT 2 cut(s) 19, 194
Eco24I GRGCYC 1 cut(s) 605
Eco47I GGWCC 1 cut(s) 222
Eco47III AGCGCT 1 cut(s) 550
Eco52I CGGCCG 3 cut(s) 226, 268, 274
Eco88I CYCGRG 1 cut(s) 655
Eco91I GGTNACC 1 cut(s) 724
EcoO65I GGTNACC 1 cut(s) 724
EcoRII CCWGG 1 cut(s) 393
EcoT38I GRGCYC 1 cut(s) 605
FaeI CATG 3 cut(s) 487, 654, 705
FaiI YATR 6 cut(s) 408, 485, 652, 672, 678, 703
FatI CATG 3 cut(s) 483, 650, 701
FauI CCCGC 2 cut(s) 346, 716
FblI GTMKAC 1 cut(s) 399
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 605
FspBI CTAG 1 cut(s) 21
GlaI GCGC 4 cut(s) 142, 253, 283, 550
GsaI CCCAGC 1 cut(s) 141
HaeII RGCGCY 2 cut(s) 144, 552
HgaI GACGC 2 cut(s) 269, 457
HhaI GCGC 4 cut(s) 143, 254, 284, 551
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 3 cut(s) 487, 654, 705
Hin6I GCGC 4 cut(s) 141, 252, 282, 549
HinP1I GCGC 4 cut(s) 141, 252, 282, 549
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HphI GGTGA 3 cut(s) 349, 718, 731
Hpy166II GTNNAC 1 cut(s) 400
Hpy188III TCNNGA 2 cut(s) 598, 643
Hpy8I GTNNAC 1 cut(s) 400
Hpy99I CGWCG 4 cut(s) 263, 404, 625, 750
HpyAV CCTTC 3 cut(s) 103, 265, 739
HpyCH4III ACNGT 1 cut(s) 746
HpyCH4V TGCA 4 cut(s) 108, 453, 585, 705
HpyF3I CTNAG 2 cut(s) 14, 606
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 3 cut(s) 487, 654, 705
HspAI GCGC 4 cut(s) 141, 252, 282, 549
KroI GCCGGC 2 cut(s) 143, 461
KroNI GCCGGC 2 cut(s) 145, 463
KspI CCGCGG 2 cut(s) 274, 712
Kzo9I GATC 2 cut(s) 636, 682
LmnI GCTCC 5 cut(s) 10, 320, 446, 591, 600
Lsp1109I GCAGC 5 cut(s) 236, 266, 452, 465, 569
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 2 cut(s) 513, 724
MalI GATC 2 cut(s) 638, 684
MboI GATC 2 cut(s) 636, 682
MboII GAAGA 2 cut(s) 301, 631
MflI RGATCY 1 cut(s) 636
MhlI GDGCHC 1 cut(s) 605
MmeI TCCRAC 1 cut(s) 32
MroNI GCCGGC 2 cut(s) 143, 461
MslI CAYNNNNRTG 1 cut(s) 86
MspA1I CMGCKG 3 cut(s) 273, 279, 711
MspR9I CCNGG 4 cut(s) 126, 395, 589, 634
Mva1269I GAATGC 1 cut(s) 129
MvaI CCWGG 1 cut(s) 395
MvnI CGCG 2 cut(s) 273, 711
NaeI GCCGGC 2 cut(s) 145, 463
NciI CCSGG 3 cut(s) 126, 589, 634
NdeII GATC 2 cut(s) 636, 682
NgoMIV GCCGGC 2 cut(s) 143, 461
NlaIII CATG 3 cut(s) 487, 654, 705
NlaIV GGNNCC 5 cut(s) 6, 239, 331, 442, 602
NmeAIII GCCGAG 3 cut(s) 303, 342, 536
NmuCI GTSAC 2 cut(s) 513, 724
NotI GCGGCCGC 1 cut(s) 274
NspI RCATGY 2 cut(s) 654, 705
PaeI GCATGC 1 cut(s) 654
PceI AGGCCT 2 cut(s) 19, 194
PcsI WCGNNNNNNNCGW 3 cut(s) 465, 617, 653
PctI GAATGC 1 cut(s) 129
PdiI GCCGGC 2 cut(s) 145, 463
PfoI TCCNGGA 1 cut(s) 632
Psp6I CCWGG 1 cut(s) 393
PspEI GGTNACC 1 cut(s) 724
PspFI CCCAGC 1 cut(s) 137
PspGI CCWGG 1 cut(s) 393
PspN4I GGNNCC 5 cut(s) 6, 239, 331, 442, 602
PspPI GGNCC 3 cut(s) 123, 222, 238
PsuI RGATCY 1 cut(s) 636
RseI CAYNNNNRTG 1 cut(s) 86
SacII CCGCGG 2 cut(s) 274, 712
SalI GTCGAC 1 cut(s) 398
Sau3AI GATC 2 cut(s) 636, 682
Sau96I GGNCC 3 cut(s) 123, 222, 238
ScrFI CCNGG 4 cut(s) 126, 395, 589, 634
SduI GDGCHC 1 cut(s) 605
SetI ASST 9 cut(s) 95, 210, 309, 414, 458, 480, 596, 664, 731
Sfr303I CCGCGG 2 cut(s) 274, 712
SgrBI CCGCGG 2 cut(s) 274, 712
SinI GGWCC 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 86
SphI GCATGC 1 cut(s) 654
SseBI AGGCCT 2 cut(s) 19, 194
SspMI CTAG 1 cut(s) 21
StuI AGGCCT 2 cut(s) 19, 194
StyD4I CCNGG 4 cut(s) 124, 393, 587, 632
TaaI ACNGT 1 cut(s) 746
TaqI TCGA 2 cut(s) 258, 399
TauI GCSGC 9 cut(s) 171, 231, 243, 273, 276, 279, 300, 303, 330
TseFI GTSAC 2 cut(s) 513, 724
TseI GCWGC 5 cut(s) 249, 279, 453, 465, 582
Tsp45I GTSAC 2 cut(s) 513, 724
TspDTI ATGAA 1 cut(s) 85
TspGWI ACGGA 1 cut(s) 417
VpaK11BI GGWCC 1 cut(s) 222
XceI RCATGY 2 cut(s) 654, 705
XmiI GTMKAC 1 cut(s) 399
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.