MD13G1184600.v1.1

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0013502
Physical Location & Seq
Forward (+)
15677868 .. 15679496
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1184600.v1.1.491

Sequence Viewer

Length: 753 bp
ATGGCCGCATTGCTGAAGACTAGCCTCCCCCTCATGCTCCCCACCCTCCTATTTCTCTACATTTTAGTTTCGGTCTCCTCCGCCACAACAATAACAATGTACAACAAGTGCACCCACCCAGTGTGGCCAGGCATCCAGCCGAGCGCCGGCCAGCCTATCCTTGCCCGCGGCGGCTTCACCCTCCCACCCAACAAAGCCCACACCCTCCACCTCCCCGCACTCTGGTCCGGCCGCTTCTGGGGCCGCCACGGCTGCACATTCGATGCCTCCGGCCGCGGCCGCTGCGCCACCGGCGACTGCGGCGGAAACCTCTTCTGCAGCGGCCTAGGTGGCACCCCACCCGCCACCCTAGCGGAAATCACCCTCGGAAACGAACAAGACTTCTACGACGTCAGCCTCGTCGATGGCTACAACCTCGCCATCTCCATCACCCCGTTTAAGGGCTCCGGCAAGTGCAGCTACGCCGGCTGCGTCAGCGACTTGAACATGATGTGCCCTGTCGGCCTCCAAGTCCGCTCCCACGACAACCGCCAGGTGGTGGCGTGCAAGAGCGCTTGCTCTGCTTTCAACTCTCCGAGGTACTGCTGCACCGGCAGCTTCGGCAGCCCTCAGTCGTGCAAGCCGACGGCGTACTCCAAGATCTTCAAGGCGGCGTGCCCCAAGGCTTACTCGTACGCTTACGACGACCCCACCAGCATCGCCACCTGCACTCGCGGGAACTTCTTGGTCACCTTCTGCCCTCACCACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

251

Amino Acids

26.69

Weight (kDa)

8.86

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 35 - 247 3.4e-82 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18250 AT1G18250
fragaria_vesca FvH4_5g17260
malus_domestica MD06G1231200.v1.1 MD13G1184600.v1.1
prunus_persica Prupe.5G232500_v2.0.a1
pyrus_communis pycom06g20250
rosa_chinensis RchiOBHm_Chr7g0178521
rosa_laevigata RLG00000005440
rosa_multiflora Rmu_sc0002421.1_g000003 Rmu_sc0016060.1_g000004
rosa_roxburghii Rroxscaffold_3G00274840
rosa_rugosa Rorug06G0417800
rosa_samantha Rh7AG016300 Rh7BG015800 Rh7CG016500 Rh7DG016400
rosa_wichuraiana Rw7G001290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 713
AatII GACGTC 1 cut(s) 393
Acc36I ACCTGC 1 cut(s) 713
AccB1I GGYRCC 1 cut(s) 332
AccB7I CCANNNNNTGG 1 cut(s) 538
AccBSI CCGCTC 1 cut(s) 516
AccII CGCG 3 cut(s) 168, 276, 714
AcoI YGGCCR 6 cut(s) 3, 125, 148, 229, 271, 277
AcuI CTGAAG 1 cut(s) 35
AcyI GRCGYC 1 cut(s) 390
AdeI CACNNNGTG 1 cut(s) 121
AfaI GTAC 4 cut(s) 101, 581, 632, 674
AfeI AGCGCT 1 cut(s) 553
AfiI CCNNNNNNNGG 7 cut(s) 146, 222, 238, 439, 440, 535, 538
AgsI TTSAA 3 cut(s) 484, 568, 646
AjnI CCWGG 2 cut(s) 127, 531
AluBI AGCT 2 cut(s) 459, 597
AluI AGCT 2 cut(s) 459, 597
Alw21I GWGCWC 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 79
Alw44I GTGCAC 1 cut(s) 109
Aor51HI AGCGCT 1 cut(s) 553
AoxI GGCC 9 cut(s) 3, 125, 148, 229, 241, 271, 277, 322, 502
ApaLI GTGCAC 1 cut(s) 109
ApeKI GCWGC 8 cut(s) 252, 282, 318, 456, 468, 585, 594, 603
AspA2I CCTAGG 1 cut(s) 325
AspLEI GCGC 3 cut(s) 146, 287, 554
AspS9I GGNCC 2 cut(s) 225, 241
AsuHPI GGTGA 5 cut(s) 169, 352, 421, 721, 734
AvaII GGWCC 1 cut(s) 225
AvrII CCTAGG 1 cut(s) 325
BaeGI GKGCMC 3 cut(s) 113, 497, 659
BalI TGGCCA 1 cut(s) 127
BanI GGYRCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 446
BbsI GAAGAC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 113
BbvI GCAGC 8 cut(s) 239, 269, 330, 455, 468, 572, 606, 615
BccI CCATC 3 cut(s) 398, 428, 434
BceAI ACGGC 2 cut(s) 265, 642
BciT130I CCWGG 2 cut(s) 129, 533
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 3 cut(s) 21, 326, 350
BfmI CTRYAG 1 cut(s) 316
BfoI RGCGCY 2 cut(s) 147, 555
BfuAI ACCTGC 1 cut(s) 713
BglI GCCNNNNNGGC 3 cut(s) 249, 330, 501
BglII AGATCT 1 cut(s) 639
BlnI CCTAGG 1 cut(s) 325
Bme1390I CCNGG 2 cut(s) 129, 533
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 225, 241
BmiI GGNNCC 3 cut(s) 242, 334, 445
BmrFI CCNGG 2 cut(s) 129, 533
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 3 cut(s) 141, 253, 705
BmuI ACTGGG 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 23
BsaHI GRCGYC 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 79
BsaJI CCNNGG 7 cut(s) 166, 247, 274, 325, 364, 575, 660
Bsc4I CCNNNNNNNGG 7 cut(s) 146, 222, 238, 439, 440, 535, 538
Bse118I RCCGGY 4 cut(s) 146, 290, 464, 590
Bse1I ACTGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 8
BseBI CCWGG 2 cut(s) 129, 533
BseDI CCNNGG 7 cut(s) 166, 247, 274, 325, 364, 575, 660
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 7 cut(s) 146, 222, 238, 439, 440, 535, 538
BseMI GCAATG 1 cut(s) 8
BseMII CTCAG 1 cut(s) 623
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 67
BseSI GKGCMC 3 cut(s) 113, 497, 659
BseX3I CGGCCG 3 cut(s) 229, 271, 277
BseXI GCAGC 8 cut(s) 239, 269, 330, 455, 468, 572, 606, 615
BsgI GTGCAG 4 cut(s) 238, 475, 571, 691
Bsh1236I CGCG 3 cut(s) 168, 276, 714
Bsh1285I CGRYCG 3 cut(s) 232, 274, 280
BshFI GGCC 9 cut(s) 5, 127, 150, 231, 243, 273, 279, 324, 504
BshNI GGYRCC 1 cut(s) 332
BsiEI CGRYCG 3 cut(s) 232, 274, 280
BsiHKAI GWGCWC 1 cut(s) 113
BsiSI CCGG 7 cut(s) 147, 228, 270, 291, 447, 465, 591
BsiWI CGTACG 1 cut(s) 672
BslI CCNNNNNNNGG 7 cut(s) 146, 222, 238, 439, 440, 535, 538
BsmAI GTCTC 1 cut(s) 79
BsnI GGCC 9 cut(s) 5, 127, 150, 231, 243, 273, 279, 324, 504
Bso31I GGTCTC 1 cut(s) 79
Bsp1286I GDGCHC 4 cut(s) 113, 446, 497, 659
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 1 cut(s) 639
BspANI GGCC 9 cut(s) 5, 127, 150, 231, 243, 273, 279, 324, 504
BspCNI CTCAG 1 cut(s) 622
BspFNI CGCG 3 cut(s) 168, 276, 714
BspLI GGNNCC 3 cut(s) 242, 334, 445
BspMAI CTGCAG 1 cut(s) 320
BspMI ACCTGC 1 cut(s) 713
BspT107I GGYRCC 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 79
BsrBI CCGCTC 1 cut(s) 516
BsrDI GCAATG 1 cut(s) 8
BsrFI RCCGGY 4 cut(s) 146, 290, 464, 590
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 1 cut(s) 119
BssAI RCCGGY 4 cut(s) 146, 290, 464, 590
BssECI CCNNGG 7 cut(s) 166, 247, 274, 325, 364, 575, 660
BssMI GATC 1 cut(s) 639
BssNI GRCGYC 1 cut(s) 390
BssT1I CCWWGG 2 cut(s) 325, 660
Bst2UI CCWGG 2 cut(s) 129, 533
Bst4CI ACNGT 1 cut(s) 749
Bst6I CTCTTC 1 cut(s) 317
BstACI GRCGYC 1 cut(s) 390
BstAUI TGTACA 1 cut(s) 99
BstC8I GCNNGC 8 cut(s) 148, 152, 166, 466, 544, 556, 620, 655
BstDEI CTNAG 1 cut(s) 609
BstDSI CCRYGG 3 cut(s) 166, 247, 274
BstEII GGTNACC 1 cut(s) 727
BstF5I GGATG 1 cut(s) 132
BstFNI CGCG 3 cut(s) 168, 276, 714
BstH2I RGCGCY 2 cut(s) 147, 555
BstHHI GCGC 3 cut(s) 146, 287, 554
BstKTI GATC 1 cut(s) 642
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 1 cut(s) 639
BstMCI CGRYCG 3 cut(s) 232, 274, 280
BstNI CCWGG 2 cut(s) 129, 533
BstPI GGTNACC 1 cut(s) 727
BstSCI CCNGG 2 cut(s) 127, 531
BstSFI CTRYAG 1 cut(s) 316
BstSLI GKGCMC 3 cut(s) 113, 497, 659
BstUI CGCG 3 cut(s) 168, 276, 714
BstV1I GCAGC 8 cut(s) 239, 269, 330, 455, 468, 572, 606, 615
BstV2I GAAGAC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 639
BstYI RGATCY 1 cut(s) 639
BstZI CGGCCG 3 cut(s) 229, 271, 277
BsuRI GGCC 9 cut(s) 5, 127, 150, 231, 243, 273, 279, 324, 504
BtgI CCRYGG 3 cut(s) 166, 247, 274
BtgZI GCGATG 1 cut(s) 682
BtsCI GGATG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 126
BveI ACCTGC 1 cut(s) 713
Cac8I GCNNGC 8 cut(s) 148, 152, 166, 466, 544, 556, 620, 655
CciNI GCGGCCGC 1 cut(s) 277
CfoI GCGC 3 cut(s) 146, 287, 554
Cfr10I RCCGGY 4 cut(s) 146, 290, 464, 590
Cfr13I GGNCC 2 cut(s) 225, 241
Cfr42I CCGCGG 2 cut(s) 169, 277
CseI GACGC 1 cut(s) 460
Csp6I GTAC 4 cut(s) 100, 580, 631, 673
CviAII CATG 2 cut(s) 34, 487
CviQI GTAC 4 cut(s) 100, 580, 631, 673
DdeI CTNAG 1 cut(s) 609
DpnI GATC 1 cut(s) 641
DpnII GATC 1 cut(s) 639
DraIII CACNNNGTG 1 cut(s) 121
EaeI YGGCCR 6 cut(s) 3, 125, 148, 229, 271, 277
EagI CGGCCG 3 cut(s) 229, 271, 277
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
EciI GGCGGA 2 cut(s) 70, 318
EclXI CGGCCG 3 cut(s) 229, 271, 277
Eco130I CCWWGG 2 cut(s) 325, 660
Eco24I GRGCYC 1 cut(s) 446
Eco31I GGTCTC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 225
Eco47III AGCGCT 1 cut(s) 553
Eco52I CGGCCG 3 cut(s) 229, 271, 277
Eco57I CTGAAG 1 cut(s) 35
Eco91I GGTNACC 1 cut(s) 727
EcoO65I GGTNACC 1 cut(s) 727
EcoRII CCWGG 2 cut(s) 127, 531
EcoT14I CCWWGG 2 cut(s) 325, 660
EcoT38I GRGCYC 1 cut(s) 446
ErhI CCWWGG 2 cut(s) 325, 660
FaeI CATG 2 cut(s) 37, 490
FaiI YATR 2 cut(s) 35, 488
FatI CATG 2 cut(s) 33, 486
FauI CCCGC 4 cut(s) 173, 223, 349, 707
FokI GGATG 1 cut(s) 119
FriOI GRGCYC 1 cut(s) 446
FspBI CTAG 3 cut(s) 21, 326, 350
GlaI GCGC 3 cut(s) 145, 286, 553
HaeII RGCGCY 2 cut(s) 147, 555
HaeIII GGCC 9 cut(s) 5, 127, 150, 231, 243, 273, 279, 324, 504
HapII CCGG 7 cut(s) 147, 228, 270, 291, 447, 465, 591
HgaI GACGC 1 cut(s) 460
HhaI GCGC 3 cut(s) 146, 287, 554
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 2 cut(s) 37, 490
Hin6I GCGC 3 cut(s) 144, 285, 552
HinP1I GCGC 3 cut(s) 144, 285, 552
HpaII CCGG 7 cut(s) 147, 228, 270, 291, 447, 465, 591
HphI GGTGA 5 cut(s) 169, 352, 421, 721, 734
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 2 cut(s) 368, 576
Hpy8I GTNNAC 1 cut(s) 111
Hpy99I CGWCG 4 cut(s) 392, 404, 628, 686
HpyAV CCTTC 1 cut(s) 742
HpyCH4III ACNGT 1 cut(s) 749
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 8 cut(s) 111, 255, 318, 456, 546, 588, 618, 708
HpyF3I CTNAG 1 cut(s) 609
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 2 cut(s) 37, 490
HspAI GCGC 3 cut(s) 144, 285, 552
KroI GCCGGC 2 cut(s) 146, 464
KroNI GCCGGC 2 cut(s) 148, 466
KspI CCGCGG 2 cut(s) 169, 277
Kzo9I GATC 1 cut(s) 639
LmnI GCTCC 3 cut(s) 42, 449, 521
Lsp1109I GCAGC 8 cut(s) 239, 269, 330, 455, 468, 572, 606, 615
LweI GCATC 3 cut(s) 141, 253, 705
MaeI CTAG 3 cut(s) 21, 326, 350
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 1 cut(s) 727
MalI GATC 1 cut(s) 641
MbiI CCGCTC 1 cut(s) 516
MboI GATC 1 cut(s) 639
MboII GAAGA 3 cut(s) 28, 304, 634
MflI RGATCY 1 cut(s) 639
MhlI GDGCHC 4 cut(s) 113, 446, 497, 659
MlsI TGGCCA 1 cut(s) 127
MluNI TGGCCA 1 cut(s) 127
Mox20I TGGCCA 1 cut(s) 127
MroNI GCCGGC 2 cut(s) 146, 464
MscI TGGCCA 1 cut(s) 127
MseI TTAA 1 cut(s) 438
Msp20I TGGCCA 1 cut(s) 127
MspA1I CMGCKG 4 cut(s) 168, 276, 282, 321
MspI CCGG 7 cut(s) 147, 228, 270, 291, 447, 465, 591
MspR9I CCNGG 2 cut(s) 129, 533
MvaI CCWGG 2 cut(s) 129, 533
MvnI CGCG 3 cut(s) 168, 276, 714
NaeI GCCGGC 2 cut(s) 148, 466
NdeII GATC 1 cut(s) 639
NgoMIV GCCGGC 2 cut(s) 146, 464
NlaIII CATG 2 cut(s) 37, 490
NlaIV GGNNCC 3 cut(s) 242, 334, 445
NmeAIII GCCGAG 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 727
NotI GCGGCCGC 1 cut(s) 277
PaqCI CACCTGC 1 cut(s) 713
PcsI WCGNNNNNNNCGW 4 cut(s) 396, 468, 620, 681
PdiI GCCGGC 2 cut(s) 148, 466
Pfl23II CGTACG 1 cut(s) 672
PflMI CCANNNNNTGG 1 cut(s) 538
Psp6I CCWGG 2 cut(s) 127, 531
PspEI GGTNACC 1 cut(s) 727
PspGI CCWGG 2 cut(s) 127, 531
PspLI CGTACG 1 cut(s) 672
PspN4I GGNNCC 3 cut(s) 242, 334, 445
PspPI GGNCC 2 cut(s) 225, 241
PstI CTGCAG 1 cut(s) 320
PsuI RGATCY 1 cut(s) 639
RsaI GTAC 4 cut(s) 101, 581, 632, 674
RsaNI GTAC 4 cut(s) 100, 580, 631, 673
SacII CCGCGG 2 cut(s) 169, 277
SaqAI TTAA 1 cut(s) 438
Sau3AI GATC 1 cut(s) 639
Sau96I GGNCC 2 cut(s) 225, 241
ScrFI CCNGG 2 cut(s) 129, 533
SduI GDGCHC 4 cut(s) 113, 446, 497, 659
SfaNI GCATC 3 cut(s) 141, 253, 705
SfcI CTRYAG 1 cut(s) 316
Sfr303I CCGCGG 2 cut(s) 169, 277
SgrAI CRCCGGYG 1 cut(s) 290
SgrBI CCGCGG 2 cut(s) 169, 277
SinI GGWCC 1 cut(s) 225
SspMI CTAG 3 cut(s) 21, 326, 350
StyD4I CCNGG 2 cut(s) 127, 531
StyI CCWWGG 2 cut(s) 325, 660
TaaI ACNGT 1 cut(s) 749
TaiI ACGT 1 cut(s) 393
TaqI TCGA 2 cut(s) 261, 402
TaqII GACCGA 1 cut(s) 61
TatI WGTACW 1 cut(s) 99
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 1 cut(s) 727
TseI GCWGC 8 cut(s) 252, 282, 318, 456, 468, 585, 594, 603
Tsp45I GTSAC 1 cut(s) 727
TspRI CASTG 1 cut(s) 126
Van91I CCANNNNNTGG 1 cut(s) 538
VneI GTGCAC 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 225
XmaJI CCTAGG 1 cut(s) 325
XspI CTAG 3 cut(s) 21, 326, 350
ZraI GACGTC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.