Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012826

Physical Location & Seq

Genomic Coordinates Reverse (-)

6676210 .. 6677680

Gene Structure 1471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G19310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTCTGATGTCCCTTCTTGTTCTAGCGGTAATGATACAAACAACAATGATTCGAGTAACTTCGAATGTAACATCTGCTTAGACTTGGCTCAAGATCCTATTGTCACTCTCTGTGGTCACTTGTTCTGTTGGCCTTGTTTATACAAATGGCTCCATCTCCATTCTCAATCTAAGGACTGTCCTGTTTGCAAAGCCGTGATCGAAGAAGACAGATTGGTTCCTTTGTACGGTAGAGGTAAATCGTCTGCTGACCCTCGGTCCAAGTCCATTCCGGGTCTCGAAGTGCCTAACCGTCCATCGGGACAGAGACCCGAAACTGCACAACCTCCTGATCCTAACCATGGTTTTGCTCATCATCATGGGTTTGGAGGGTTCATGGGAGGTTTTGCTGCTCCGATGGCGAGTGCGCGGTTCGGGAATGTTACATTGTCTGCAGCGTTTGGCGGTTTGATTCCTTCTTTGTTCAACCTCCATTTCCATGGTTTCCCTGATGCAGCCATGTATGGAGCTGCTGCTTCTGGCGGCTTCCCTCACGGTTTCTCGAATCCGTTTCATGGAGGACACTCGCATATGCATAGTTACCAGCGGCACACGGGTCGACAAGGACAACAAGACCATCACTTGAGGATATTGTTACTCATTGTTTTCGTCGTTGTTGTGTTTTCTCTCTTCTTGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006928 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016477 GO:0016567 GO:0016740 GO:0018996 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030054 GO:0030154 GO:0030163 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040011 GO:0040039 GO:0042175 GO:0042221 GO:0042303 GO:0042692 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043292 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044449 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0048870 GO:0050896 GO:0051146 GO:0051179 GO:0051603 GO:0051674 GO:0051716 GO:0051788 GO:0055001 GO:0055002 GO:0055120 GO:0061061 GO:0061630 GO:0061659 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0099080 GO:0099081 GO:0099512 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3

Protein Analysis

226

Amino Acids

24.52

Weight (kDa)

6.77

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	21 - 68	1.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	22 - 64	5.7e-09	Ring finger domain
zf-C3HC4_2	PF13923	22 - 63	9.1e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	22 - 64	1.4e-07	zinc-RING finger domain
zf-C3HC4	PF00097	23 - 63	1.5e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	23 - 61	5.2e-08	RING-type zinc-finger
zf-C3HC4_4	PF15227	23 - 63	3.7e-06	zinc finger of C3HC4-type, RING

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19310
fragaria_vesca	FvH4_2g40351 FvH4_2g40351 FvH4_2g40351
malus_domestica	MD08G1036700.v1.1
prunus_persica	Prupe.1G384000_v2.0.a1
pyrus_communis	pycom08g02930 pycom15g02870
rosa_chinensis	RchiOBHm_Chr6g0300391
rosa_laevigata	RLG00000011342
rosa_multiflora	Rmu_sc0001670.1_g000013
rosa_roxburghii	Rroxscaffold_7G00167840
rosa_rugosa	Rorug06G0295600
rosa_samantha	Rh6AG408300 Rh6BG415600 Rh6CG423000 Rh6DG408600
rosa_wichuraiana	Rw6G035710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	598
AccII	CGCG	1 cut(s)	409
AciI	CCGC	5 cut(s)	27, 409, 444, 522, 586
AclWI	GGATC	2 cut(s)	89, 326
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	4 cut(s)	227, 298, 341, 554
AgsI	TTSAA	1 cut(s)	466
AhdI	GACNNNNNGTC	1 cut(s)	256
AluBI	AGCT	2 cut(s)	509, 678
AluI	AGCT	2 cut(s)	509, 678
Alw26I	GTCTC	2 cut(s)	281, 301
AlwI	GGATC	2 cut(s)	89, 326
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	5 cut(s)	389, 434, 494, 509, 512
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	258
AsuC2I	CCSGG	1 cut(s)	273
AsuII	TTCGAA	1 cut(s)	63
AvaII	GGWCC	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	213
BbvI	GCAGC	5 cut(s)	376, 446, 496, 499, 506
BccI	CCATC	4 cut(s)	162, 304, 391, 624
BceAI	ACGGC	1 cut(s)	179
BcgI	CGANNNNNNTGC	2 cut(s)	578, 612
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	2 cut(s)	281, 301
BfaI	CTAG	2 cut(s)	24, 679
BfmI	CTRYAG	1 cut(s)	432
BisI	GCNGC	7 cut(s)	390, 435, 495, 510, 513, 523, 587
BlsI	GCNGC	7 cut(s)	391, 436, 496, 511, 514, 524, 588
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	258
BmeRI	GACNNNNNGTC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	258
BmiI	GGNNCC	2 cut(s)	152, 219
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	481
BpiI	GAAGAC	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	63
BpuEI	CTTGAG	2 cut(s)	75, 643
BpuMI	CCSGG	1 cut(s)	273
BsaI	GGTCTC	2 cut(s)	281, 301
BsaJI	CCNNGG	3 cut(s)	254, 340, 478
Bsc4I	CCNNNNNNNGG	4 cut(s)	227, 298, 341, 554
BseDI	CCNNGG	3 cut(s)	254, 340, 478
BseLI	CCNNNNNNNGG	4 cut(s)	227, 298, 341, 554
BseXI	GCAGC	5 cut(s)	376, 446, 496, 499, 506
BsgI	GTGCAG	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	409
BshFI	GGCC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	4 cut(s)	227, 298, 341, 554
BsmAI	GTCTC	2 cut(s)	281, 301
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	133
Bso31I	GGTCTC	2 cut(s)	281, 301
Bsp119I	TTCGAA	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	94, 198, 331
Bsp19I	CCATGG	2 cut(s)	340, 478
BspACI	CCGC	5 cut(s)	27, 409, 444, 522, 586
BspANI	GGCC	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	152, 219
BspMAI	CTGCAG	1 cut(s)	436
BspPI	GGATC	2 cut(s)	89, 326
BspT104I	TTCGAA	1 cut(s)	63
BspTNI	GGTCTC	2 cut(s)	281, 301
BssECI	CCNNGG	3 cut(s)	254, 340, 478
BssMI	GATC	3 cut(s)	94, 198, 331
BssT1I	CCWWGG	2 cut(s)	340, 478
Bst4CI	ACNGT	4 cut(s)	179, 230, 293, 536
Bst6I	CTCTTC	1 cut(s)	674
BstBI	TTCGAA	1 cut(s)	63
BstDEI	CTNAG	2 cut(s)	79, 171
BstDSI	CCRYGG	2 cut(s)	340, 478
BstFNI	CGCG	1 cut(s)	409
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	3 cut(s)	97, 201, 334
BstMAI	GTCTC	2 cut(s)	281, 301
BstMBI	GATC	3 cut(s)	94, 198, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	5 cut(s)	376, 446, 496, 499, 506
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	94
BstXI	CCANNNNNNTGG	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	133
BtgI	CCRYGG	2 cut(s)	340, 478
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	6 cut(s)	341, 359, 376, 479, 499, 554
CviJI	RGCY	8 cut(s)	89, 133, 151, 194, 497, 509, 525, 678
CviKI_1	RGCY	8 cut(s)	89, 133, 151, 194, 497, 509, 525, 678
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	2 cut(s)	79, 171
DpnI	GATC	3 cut(s)	96, 200, 333
DpnII	GATC	3 cut(s)	94, 198, 331
DriI	GACNNNNNGTC	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	674
Eam1105I	GACNNNNNGTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	674
Eco130I	CCWWGG	2 cut(s)	340, 478
Eco31I	GGTCTC	2 cut(s)	281, 301
Eco47I	GGWCC	1 cut(s)	258
EcoT14I	CCWWGG	2 cut(s)	340, 478
EcoT22I	ATGCAT	1 cut(s)	576
ErhI	CCWWGG	2 cut(s)	340, 478
FaeI	CATG	6 cut(s)	344, 362, 379, 482, 502, 557
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	6 cut(s)	340, 358, 375, 478, 498, 553
FauNDI	CATATG	1 cut(s)	570
FblI	GTMKAC	1 cut(s)	598
Fnu4HI	GCNGC	7 cut(s)	390, 435, 495, 510, 513, 523, 587
Fsp4HI	GCNGC	7 cut(s)	390, 435, 495, 510, 513, 523, 587
FspBI	CTAG	2 cut(s)	24, 679
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	7 cut(s)	390, 435, 495, 510, 513, 523, 587
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	1 cut(s)	272
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	6 cut(s)	344, 362, 379, 482, 502, 557
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HincII	GTYRAC	1 cut(s)	599
HindII	GTYRAC	1 cut(s)	599
HinfI	GANTC	3 cut(s)	50, 451, 544
HpaII	CCGG	1 cut(s)	272
Hpy166II	GTNNAC	1 cut(s)	599
Hpy188I	TCNGA	2 cut(s)	7, 396
Hpy188III	TCNNGA	7 cut(s)	92, 278, 300, 329, 415, 541, 673
Hpy8I	GTNNAC	1 cut(s)	599
Hpy99I	CGWCG	1 cut(s)	653
HpyAV	CCTTC	2 cut(s)	24, 465
HpyCH4III	ACNGT	4 cut(s)	179, 230, 293, 536
HpyCH4V	TGCA	5 cut(s)	189, 320, 434, 494, 574
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	2 cut(s)	79, 171
Hsp92II	CATG	6 cut(s)	344, 362, 379, 482, 502, 557
HspAI	GCGC	1 cut(s)	407
Kzo9I	GATC	3 cut(s)	94, 198, 331
LmnI	GCTCC	3 cut(s)	156, 397, 506
LpnPI	CCDG	6 cut(s)	195, 285, 342, 501, 504, 596
Lsp1109I	GCAGC	5 cut(s)	376, 446, 496, 499, 506
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	2 cut(s)	24, 679
MaeIII	GTNAC	7 cut(s)	56, 68, 103, 116, 421, 578, 633
MalI	GATC	3 cut(s)	96, 200, 333
MboI	GATC	3 cut(s)	94, 198, 331
MboII	GAAGA	3 cut(s)	215, 218, 661
MflI	RGATCY	1 cut(s)	94
MnlI	CCTC	9 cut(s)	227, 264, 336, 362, 374, 479, 540, 551, 618
Mph1103I	ATGCAT	1 cut(s)	576
MslI	CAYNNNNRTG	2 cut(s)	357, 477
MspA1I	CMGCKG	1 cut(s)	586
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	1 cut(s)	398
NciI	CCSGG	1 cut(s)	273
NcoI	CCATGG	2 cut(s)	340, 478
NdeI	CATATG	1 cut(s)	570
NdeII	GATC	3 cut(s)	94, 198, 331
NlaIII	CATG	6 cut(s)	344, 362, 379, 482, 502, 557
NlaIV	GGNNCC	2 cut(s)	152, 219
NmuCI	GTSAC	2 cut(s)	103, 116
NsiI	ATGCAT	1 cut(s)	576
NspV	TTCGAA	1 cut(s)	63
PfeI	GAWTC	3 cut(s)	50, 451, 544
PkrI	GCNGC	7 cut(s)	391, 436, 496, 511, 514, 524, 588
PspN4I	GGNNCC	2 cut(s)	152, 219
PspPI	GGNCC	1 cut(s)	258
PstI	CTGCAG	1 cut(s)	436
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
RseI	CAYNNNNRTG	2 cut(s)	357, 477
SalI	GTCGAC	1 cut(s)	597
SatI	GCNGC	7 cut(s)	390, 435, 495, 510, 513, 523, 587
Sau3AI	GATC	3 cut(s)	94, 198, 331
Sau96I	GGNCC	1 cut(s)	258
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	6 cut(s)	238, 328, 385, 471, 511, 680
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	432
SfuI	TTCGAA	1 cut(s)	63
SinI	GGWCC	1 cut(s)	258
SmiMI	CAYNNNNRTG	2 cut(s)	357, 477
SmlI	CTYRAG	3 cut(s)	90, 622, 673
SmoI	CTYRAG	3 cut(s)	90, 622, 673
SsiI	CCGC	5 cut(s)	27, 409, 444, 522, 586
SspMI	CTAG	2 cut(s)	24, 679
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	2 cut(s)	340, 478
TaaI	ACNGT	4 cut(s)	179, 230, 293, 536
TaqI	TCGA	6 cut(s)	53, 63, 201, 279, 542, 598
TaqII	GACCGA	1 cut(s)	246
TauI	GCSGC	2 cut(s)	525, 589
TfiI	GAWTC	3 cut(s)	50, 451, 544
TseFI	GTSAC	2 cut(s)	103, 116
TseI	GCWGC	5 cut(s)	389, 434, 494, 509, 512
Tsp45I	GTSAC	2 cut(s)	103, 116
TspDTI	ATGAA	2 cut(s)	364, 542
TspGWI	ACGGA	1 cut(s)	537
VpaK11BI	GGWCC	1 cut(s)	258
XmiI	GTMKAC	1 cut(s)	598
XspI	CTAG	2 cut(s)	24, 679
Zsp2I	ATGCAT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.