Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0012826

Physical Location & Seq

Genomic Coordinates Forward (+)

2697350 .. 2699078

Gene Structure 1729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1036700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGAGGTGGGTTCGGCGAATCAACGAGTAGGTCGTCCCAAGGGCCTTCATTCTCCGGCAGTAACAATAATGGTGACGCTGGTGATTTCGAATGCAATATTTGCTTTGAATTGGCCCAAGACCCAATTGTGACCCTATGCGGCCATCTCTTCTGCTGGCCTTGCCTTTACAAGTGGCTCCATATTCACTCCCACTCTCAGGAATGCCCTGTTTGCAAAGCCCTTGTAAAGGAGGAGAGTTTGGTTCCTTTATACGGTAGGGGAAAGACATCAACGGACCCAAGATCAAAGTCCATTCCTGGCATTAGTATCCCAAACCGTCCAGCAGGACAAAGACCCGAAACAGCTCCTCCACCAGAACAGAACCATTTTGCTCACCGTGGATTTGGGTTCATGGGAGGGATGGGAGGTTTGGGCGGGTTTGCACCAGTTGCAACCACAAGGTTTGGGAATTTCACATTTTCTGCAGCTATTGGTGGCTTTATCCCTTCACTGTTCAATTTTCCGCTGCATGGGTTTCCTGATCCCACCATTTACGGTGAAAGTGCTGGATTTCCTCATGGGTTCTCAAATGCATTTCATGGCGGCCATATACATAGACATCACCTCCGCAGGGGAACAGGTCAGGGACAGCAAGATTATAGACTGAAGATGTTGTGTATGATTGTTATATTTTCAGTAATTCTTGCTCTCGCTTGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006928 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016477 GO:0016567 GO:0016740 GO:0018996 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030054 GO:0030154 GO:0030163 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040011 GO:0040039 GO:0042175 GO:0042221 GO:0042303 GO:0042692 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043292 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044449 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0048870 GO:0050896 GO:0051146 GO:0051179 GO:0051603 GO:0051674 GO:0051716 GO:0051788 GO:0055001 GO:0055002 GO:0055120 GO:0061061 GO:0061630 GO:0061659 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0099080 GO:0099081 GO:0099512 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3

Protein Analysis

235

Amino Acids

25.32

Weight (kDa)

8.16

Isoelectric Point (pI)

52.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	30 - 77	1.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	31 - 73	2.2e-08	Ring finger domain
zf-C3HC4_2	PF13923	31 - 72	3.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	31 - 73	1.1e-07	zinc-RING finger domain
zf-C3HC4	PF00097	32 - 72	9.7e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	32 - 70	1.7e-08	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19310
fragaria_vesca	FvH4_2g40351 FvH4_2g40351 FvH4_2g40351
malus_domestica	MD08G1036700.v1.1
prunus_persica	Prupe.1G384000_v2.0.a1
pyrus_communis	pycom08g02930 pycom15g02870
rosa_chinensis	RchiOBHm_Chr6g0300391
rosa_laevigata	RLG00000011342
rosa_multiflora	Rmu_sc0001670.1_g000013
rosa_roxburghii	Rroxscaffold_7G00167840
rosa_rugosa	Rorug06G0295600
rosa_samantha	Rh6AG408300 Rh6BG415600 Rh6CG423000 Rh6DG408600
rosa_wichuraiana	Rw6G035710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	141, 417, 506, 585, 610
AclWI	GGATC	1 cut(s)	518
AcoI	YGGCCR	2 cut(s)	142, 586
AcsI	RAATTY	1 cut(s)	451
AcuI	CTGAAG	1 cut(s)	668
AfiI	CCNNNNNNNGG	5 cut(s)	199, 229, 254, 512, 613
AgsI	TTSAA	2 cut(s)	110, 499
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	2 cut(s)	347, 470
AluI	AGCT	2 cut(s)	347, 470
AlwI	GGATC	1 cut(s)	518
AoxI	GGCC	5 cut(s)	44, 114, 142, 158, 586
ApeKI	GCWGC	2 cut(s)	467, 508
ApoI	RAATTY	1 cut(s)	451
AspS9I	GGNCC	3 cut(s)	44, 115, 277
AsuHPI	GGTGA	5 cut(s)	86, 95, 368, 551, 596
AsuII	TTCGAA	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	479, 495
BccI	CCATC	2 cut(s)	153, 397
BciT130I	CCWGG	1 cut(s)	300
BciVI	GTATCC	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	465
BfuI	GTATCC	1 cut(s)	320
BisI	GCNGC	4 cut(s)	142, 468, 509, 586
BlsI	GCNGC	4 cut(s)	143, 469, 510, 587
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	3 cut(s)	44, 115, 277
BmiI	GGNNCC	3 cut(s)	179, 246, 279
BmrFI	CCNGG	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	40, 379
BsaXI	ACNNNNNCTCC	4 cut(s)	334, 364, 591, 621
Bsc4I	CCNNNNNNNGG	5 cut(s)	199, 229, 254, 512, 613
Bse1I	ACTGG	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	40, 379
BseGI	GGATG	1 cut(s)	408
BseLI	CCNNNNNNNGG	5 cut(s)	199, 229, 254, 512, 613
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	428
BseRI	GAGGAG	2 cut(s)	248, 339
BseXI	GCAGC	2 cut(s)	479, 495
BshFI	GGCC	5 cut(s)	46, 116, 144, 160, 588
BsiSI	CCGG	1 cut(s)	57
BslFI	GGGAC	2 cut(s)	22, 642
BslI	CCNNNNNNNGG	5 cut(s)	199, 229, 254, 512, 613
BsmFI	GGGAC	2 cut(s)	22, 642
BsmI	GAATGC	2 cut(s)	98, 209
BsnI	GGCC	5 cut(s)	46, 116, 144, 160, 588
Bsp119I	TTCGAA	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	284, 523
BspACI	CCGC	5 cut(s)	141, 417, 506, 585, 610
BspANI	GGCC	5 cut(s)	46, 116, 144, 160, 588
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	3 cut(s)	179, 246, 279
BspMAI	CTGCAG	1 cut(s)	469
BspPI	GGATC	1 cut(s)	518
BspT104I	TTCGAA	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	428
BssECI	CCNNGG	2 cut(s)	40, 379
BssMI	GATC	2 cut(s)	284, 523
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	5 cut(s)	257, 320, 380, 495, 539
Bst6I	CTCTTC	1 cut(s)	155
BstAPI	GCANNNNNTGC	2 cut(s)	102, 431
BstBI	TTCGAA	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	198
BstDSI	CCRYGG	1 cut(s)	379
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	408
BstKTI	GATC	2 cut(s)	287, 526
BstMBI	GATC	2 cut(s)	284, 523
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 162, 213, 431
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	2 cut(s)	479, 495
BsuI	GTATCC	1 cut(s)	320
BsuRI	GGCC	5 cut(s)	46, 116, 144, 160, 588
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	491
Cac8I	GCNNGC	1 cut(s)	158
Cfr13I	GGNCC	3 cut(s)	44, 115, 277
CseI	GACGC	1 cut(s)	86
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	4 cut(s)	394, 512, 560, 581
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	2 cut(s)	286, 525
DpnII	GATC	2 cut(s)	284, 523
EaeI	YGGCCR	2 cut(s)	142, 586
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	668
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	4 cut(s)	397, 515, 563, 584
FaqI	GGGAC	2 cut(s)	22, 642
FatI	CATG	4 cut(s)	393, 511, 559, 580
FauI	CCCGC	1 cut(s)	410
Fnu4HI	GCNGC	4 cut(s)	142, 468, 509, 586
FokI	GGATG	1 cut(s)	415
Fsp4HI	GCNGC	4 cut(s)	142, 468, 509, 586
GluI	GCNGC	4 cut(s)	142, 468, 509, 586
HaeIII	GGCC	5 cut(s)	46, 116, 144, 160, 588
HapII	CCGG	1 cut(s)	57
HgaI	GACGC	1 cut(s)	86
Hin1II	CATG	4 cut(s)	397, 515, 563, 584
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	5 cut(s)	86, 95, 368, 551, 596
Hpy188III	TCNNGA	2 cut(s)	200, 521
HpyAV	CCTTC	2 cut(s)	57, 498
HpyCH4III	ACNGT	5 cut(s)	257, 320, 380, 495, 539
HpyCH4V	TGCA	7 cut(s)	96, 216, 425, 434, 467, 511, 575
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 162, 213, 431
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	4 cut(s)	397, 515, 563, 584
Kzo9I	GATC	2 cut(s)	284, 523
LmnI	GCTCC	2 cut(s)	183, 352
Lsp1109I	GCAGC	2 cut(s)	479, 495
MaeIII	GTNAC	3 cut(s)	62, 74, 130
MalI	GATC	2 cut(s)	286, 525
MboI	GATC	2 cut(s)	284, 523
MboII	GAAGA	2 cut(s)	142, 661
MfeI	CAATTG	1 cut(s)	126
MluCI	AATT	5 cut(s)	110, 126, 451, 499, 681
MnlI	CCTC	6 cut(s)	226, 360, 392, 401, 567, 617
Mph1103I	ATGCAT	1 cut(s)	577
MspA1I	CMGCKG	1 cut(s)	508
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	300
MunI	CAATTG	1 cut(s)	126
Mva1269I	GAATGC	2 cut(s)	98, 209
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	4 cut(s)	102, 162, 213, 431
NdeII	GATC	2 cut(s)	284, 523
NlaIII	CATG	4 cut(s)	397, 515, 563, 584
NlaIV	GGNNCC	3 cut(s)	179, 246, 279
NmuCI	GTSAC	2 cut(s)	74, 130
NsiI	ATGCAT	1 cut(s)	577
NspV	TTCGAA	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PctI	GAATGC	2 cut(s)	98, 209
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	4 cut(s)	143, 469, 510, 587
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	3 cut(s)	179, 246, 279
PspPI	GGNCC	3 cut(s)	44, 115, 277
PstI	CTGCAG	1 cut(s)	469
SatI	GCNGC	4 cut(s)	142, 468, 509, 586
Sau3AI	GATC	2 cut(s)	284, 523
Sau96I	GGNCC	3 cut(s)	44, 115, 277
ScrFI	CCNGG	1 cut(s)	300
SetI	ASST	8 cut(s)	10, 35, 349, 412, 446, 472, 609, 625
SfcI	CTRYAG	1 cut(s)	465
SfuI	TTCGAA	1 cut(s)	90
SinI	GGWCC	1 cut(s)	277
Sse9I	AATT	5 cut(s)	110, 126, 451, 499, 681
SsiI	CCGC	5 cut(s)	141, 417, 506, 585, 610
SspI	AATATT	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	5 cut(s)	257, 320, 380, 495, 539
TaqI	TCGA	1 cut(s)	90
TasI	AATT	5 cut(s)	110, 126, 451, 499, 681
TauI	GCSGC	2 cut(s)	144, 588
TfiI	GAWTC	1 cut(s)	20
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	2 cut(s)	74, 130
TseI	GCWGC	2 cut(s)	467, 508
Tsp45I	GTSAC	2 cut(s)	74, 130
TspDTI	ATGAA	3 cut(s)	39, 382, 569
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	277
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	1 cut(s)	451
Zsp2I	ATGCAT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.