Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012826

Physical Location & Seq

Genomic Coordinates Forward (+)

28756005 .. 28759691

Gene Structure 3687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40351.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCTAGTGGTTTTGGGGATTCAGCGAGCAGGCCATCACAATCACAACAAGGGCCTTCTTTCCCCAGCAATAACAATAGTAATGGGGATGCTGGTGATTTTGAATGCAATATCTGCTTTGATTTAGCCCAAGACCCGATTGTTACCCTTTGTGGCCATCTTTTCTGCTGGCCGTGCCTTTACAAATGGCTCCACATTCACTCCCATGCTCAGGAATGCCCTGTTTGCAAAGCCCTCGTGAAGGAGGAGAATTTGGTCCCCTTGTATGGTAGGGGAAAGACATCTACTGACCCAAGATCAAAGTCCATTCCTGGAGTTGATATTCCAAATCGTCCAGCAGGGCAAAGACCTGAAACAGCTCCTCCACCAGAACAGAATCATTTCGCCCAACGTGGGTTTGGATTCATGGGAGGCTTGGGAGGTTTGGGAGGGTATGCTCCACCAATGGCAACCACAACAAGGTTTGGGAATTTCACATTCTCTGCAGCTTTTGGTGGCCTTTTCCCGTCGTTGTTAAATTTTCAGATGCATGGGTTTCCTGATGCTCCCTTGTATGGTGCAACTGCTGGATTTCCGCATGGGTTTCAAAATACATTTCATGGCCCCCATGGACATAGATACAATTTCCGTCCAGGTCCTCGTGTAGGTCGCCCAGCTATGGTTCAAGATTATTACCTGAAGATGTTGATTATGTTTGTTGTAGCTTGTGCTCTTATGGCTCTTTTGTGGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006928 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016477 GO:0016567 GO:0016740 GO:0018996 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030054 GO:0030154 GO:0030163 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040011 GO:0040039 GO:0042175 GO:0042221 GO:0042303 GO:0042692 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043292 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044449 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0048870 GO:0050896 GO:0051146 GO:0051179 GO:0051603 GO:0051674 GO:0051716 GO:0051788 GO:0055001 GO:0055002 GO:0055120 GO:0061061 GO:0061630 GO:0061659 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0099080 GO:0099081 GO:0099512 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3

Protein Analysis

245

Amino Acids

26.57

Weight (kDa)

8.14

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	115 - 162	2.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	116 - 157	2.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	116 - 158	3e-08	Ring finger domain
zf-RING_5	PF14634	116 - 158	3.1e-07	zinc-RING finger domain
zf-C3HC4	PF00097	117 - 157	1.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	117 - 155	5.8e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19310
fragaria_vesca	FvH4_2g40351 FvH4_2g40351 FvH4_2g40351
malus_domestica	MD08G1036700.v1.1
prunus_persica	Prupe.1G384000_v2.0.a1
pyrus_communis	pycom08g02930 pycom15g02870
rosa_chinensis	RchiOBHm_Chr6g0300391
rosa_laevigata	RLG00000011342
rosa_multiflora	Rmu_sc0001670.1_g000013
rosa_roxburghii	Rroxscaffold_7G00167840
rosa_rugosa	Rorug06G0295600
rosa_samantha	Rh6AG408300 Rh6BG415600 Rh6CG423000 Rh6DG408600
rosa_wichuraiana	Rw6G035710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	575
AcoI	YGGCCR	2 cut(s)	154, 170
AcsI	RAATTY	3 cut(s)	250, 469, 517
AcuI	CTGAAG	1 cut(s)	698
AfiI	CCNNNNNNNGG	8 cut(s)	211, 241, 266, 393, 459, 554, 644, 658
AgsI	TTSAA	3 cut(s)	104, 587, 665
AjnI	CCWGG	2 cut(s)	310, 631
AluBI	AGCT	4 cut(s)	359, 488, 656, 704
AluI	AGCT	4 cut(s)	359, 488, 656, 704
Alw21I	GWGCWC	1 cut(s)	712
AoxI	GGCC	6 cut(s)	32, 53, 154, 170, 496, 601
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	3 cut(s)	250, 469, 517
Asp700I	GAANNNNTTC	1 cut(s)	380
AspS9I	GGNCC	4 cut(s)	53, 256, 602, 635
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	256, 635
BalI	TGGCCA	1 cut(s)	156
BauI	CACGAG	2 cut(s)	236, 639
Bbv12I	GWGCWC	1 cut(s)	712
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	2 cut(s)	43, 165
BceAI	ACGGC	1 cut(s)	157
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BciT130I	CCWGG	2 cut(s)	312, 633
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	483
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
Bme1390I	CCNGG	2 cut(s)	312, 633
Bme18I	GGWCC	2 cut(s)	256, 635
BmgT120I	GGNCC	4 cut(s)	53, 256, 602, 635
BmiI	GGNNCC	3 cut(s)	191, 258, 604
BmrFI	CCNGG	2 cut(s)	312, 633
BmsI	GCATC	3 cut(s)	79, 516, 532
BpmI	CTGGAG	1 cut(s)	333
Bpu10I	CCTNAGC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	607
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 346, 376
Bsc4I	CCNNNNNNNGG	8 cut(s)	211, 241, 266, 393, 459, 554, 644, 658
BseBI	CCWGG	2 cut(s)	312, 633
BseDI	CCNNGG	1 cut(s)	607
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	8 cut(s)	211, 241, 266, 393, 459, 554, 644, 658
BseMII	CTCAG	1 cut(s)	224
BseRI	GAGGAG	2 cut(s)	260, 351
BseXI	GCAGC	1 cut(s)	497
BseYI	CCCAGC	2 cut(s)	65, 652
BshFI	GGCC	6 cut(s)	34, 55, 156, 172, 498, 603
BsiHKAI	GWGCWC	1 cut(s)	712
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	8 cut(s)	211, 241, 266, 393, 459, 554, 644, 658
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	2 cut(s)	110, 221
BsnI	GGCC	6 cut(s)	34, 55, 156, 172, 498, 603
Bsp1286I	GDGCHC	1 cut(s)	712
Bsp143I	GATC	1 cut(s)	296
Bsp19I	CCATGG	1 cut(s)	607
BspACI	CCGC	1 cut(s)	575
BspANI	GGCC	6 cut(s)	34, 55, 156, 172, 498, 603
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	3 cut(s)	191, 258, 604
BspMAI	CTGCAG	1 cut(s)	487
BssECI	CCNNGG	1 cut(s)	607
BssMI	GATC	1 cut(s)	296
BssSI	CACGAG	2 cut(s)	236, 639
BssT1I	CCWWGG	1 cut(s)	607
Bst2BI	CACGAG	2 cut(s)	236, 639
Bst2UI	CCWGG	2 cut(s)	312, 633
BstAPI	GCANNNNNTGC	1 cut(s)	114
BstC8I	GCNNGC	3 cut(s)	28, 32, 170
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	607
BstENI	CCTNNNNNAGG	2 cut(s)	239, 642
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	296
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 174, 225, 716
BstNI	CCWGG	2 cut(s)	312, 633
BstSCI	CCNGG	2 cut(s)	310, 631
BstSFI	CTRYAG	1 cut(s)	483
BstV1I	GCAGC	1 cut(s)	497
BsuRI	GGCC	6 cut(s)	34, 55, 156, 172, 498, 603
BtgI	CCRYGG	1 cut(s)	607
BtsCI	GGATG	1 cut(s)	94
Cac8I	GCNNGC	3 cut(s)	28, 32, 170
Cfr13I	GGNCC	4 cut(s)	53, 256, 602, 635
CviAII	CATG	6 cut(s)	206, 406, 530, 578, 599, 608
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	298
DpnII	GATC	1 cut(s)	296
EaeI	YGGCCR	2 cut(s)	154, 170
Eco130I	CCWWGG	1 cut(s)	607
Eco47I	GGWCC	2 cut(s)	256, 635
Eco57I	CTGAAG	1 cut(s)	698
EcoNI	CCTNNNNNAGG	2 cut(s)	239, 642
EcoO109I	RGGNCCY	2 cut(s)	53, 635
EcoRII	CCWGG	2 cut(s)	310, 631
EcoT14I	CCWWGG	1 cut(s)	607
EcoT22I	ATGCAT	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	6 cut(s)	209, 409, 533, 581, 602, 611
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	6 cut(s)	205, 405, 529, 577, 598, 607
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	1 cut(s)	486
GsaI	CCCAGC	2 cut(s)	69, 656
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	6 cut(s)	34, 55, 156, 172, 498, 603
Hin1II	CATG	6 cut(s)	209, 409, 533, 581, 602, 611
HinfI	GANTC	3 cut(s)	20, 376, 402
HphI	GGTGA	1 cut(s)	107
Hpy188I	TCNGA	1 cut(s)	525
Hpy188III	TCNNGA	4 cut(s)	212, 238, 539, 665
Hpy99I	CGWCG	1 cut(s)	511
HpyAV	CCTTC	2 cut(s)	66, 235
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	5 cut(s)	108, 228, 485, 529, 560
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 174, 225, 716
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	391
Hsp92II	CATG	6 cut(s)	209, 409, 533, 581, 602, 611
Kzo9I	GATC	1 cut(s)	296
LmnI	GCTCC	4 cut(s)	195, 364, 442, 550
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	3 cut(s)	79, 516, 532
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	1 cut(s)	298
MboI	GATC	1 cut(s)	296
MboII	GAAGA	1 cut(s)	691
MhlI	GDGCHC	1 cut(s)	712
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	4 cut(s)	250, 469, 517, 622
MluNI	TGGCCA	1 cut(s)	156
MnlI	CCTC	7 cut(s)	238, 245, 372, 404, 413, 422, 648
Mox20I	TGGCCA	1 cut(s)	156
Mph1103I	ATGCAT	1 cut(s)	531
MroXI	GAANNNNTTC	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	1 cut(s)	515
MslI	CAYNNNNRTG	1 cut(s)	204
Msp20I	TGGCCA	1 cut(s)	156
MspR9I	CCNGG	2 cut(s)	312, 633
Mva1269I	GAATGC	2 cut(s)	110, 221
MvaI	CCWGG	2 cut(s)	312, 633
MwoI	GCNNNNNNNGC	4 cut(s)	114, 174, 225, 716
NcoI	CCATGG	1 cut(s)	607
NdeII	GATC	1 cut(s)	296
NlaIII	CATG	6 cut(s)	209, 409, 533, 581, 602, 611
NlaIV	GGNNCC	3 cut(s)	191, 258, 604
NsiI	ATGCAT	1 cut(s)	531
PctI	GAATGC	2 cut(s)	110, 221
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	3 cut(s)	20, 376, 402
PfoI	TCCNGGA	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	487
PpuMI	RGGWCCY	1 cut(s)	635
Psp5II	RGGWCCY	1 cut(s)	635
Psp6I	CCWGG	2 cut(s)	310, 631
PspFI	CCCAGC	2 cut(s)	65, 652
PspGI	CCWGG	2 cut(s)	310, 631
PspN4I	GGNNCC	3 cut(s)	191, 258, 604
PspPI	GGNCC	4 cut(s)	53, 256, 602, 635
PspPPI	RGGWCCY	1 cut(s)	635
PstI	CTGCAG	1 cut(s)	487
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	515
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	1 cut(s)	296
Sau96I	GGNCC	4 cut(s)	53, 256, 602, 635
ScrFI	CCNGG	2 cut(s)	312, 633
SduI	GDGCHC	1 cut(s)	712
SfaNI	GCATC	3 cut(s)	79, 516, 532
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	2 cut(s)	256, 635
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	4 cut(s)	250, 469, 517, 622
SsiI	CCGC	1 cut(s)	575
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	2 cut(s)	310, 631
StyI	CCWWGG	1 cut(s)	607
TaiI	ACGT	1 cut(s)	394
TasI	AATT	4 cut(s)	250, 469, 517, 622
TfiI	GAWTC	3 cut(s)	20, 376, 402
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TseI	GCWGC	1 cut(s)	485
TspDTI	ATGAA	2 cut(s)	394, 587
TspGWI	ACGGA	1 cut(s)	617
VpaK11BI	GGWCC	2 cut(s)	256, 635
XagI	CCTNNNNNAGG	2 cut(s)	239, 642
XapI	RAATTY	3 cut(s)	250, 469, 517
XcmI	CCANNNNNNNNNTGG	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	380
XspI	CTAG	1 cut(s)	6
Zsp2I	ATGCAT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.