Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012826

Physical Location & Seq

Genomic Coordinates Forward (+)

44793955 .. 44800696

Gene Structure 6742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0295600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1845 bp

ATGTTATCTCAAGCAGCGAGATTGCAATTAATTGAGTCGGTTATTCAAAGTGTGCTTATTTATAGTTTTCACATCTACTCCTGGCCTCGTACTCTCTTGAAGGAGGTGCAACGGTGGATTCGTAATTTCTTTTGGACTGGAGATCCTCTCAAAAAAGGTGCTGCACTGGTTTCTTGGGATCACATCTGTCAACCCAAGGATAGAGGAGGCTTGGGTCTTAAGAATCTGGTTGTTTTAAATCAGTCCCTTCTCTTAAAAAAAGGGTGGGAGGTGGTGTCTAGAGCTTCTCCTGCAGCTTGCTTTTTGCATGACCGGTTTCTTACTGTTGGTTTTCAGCCATGTGCTTATTATAAAAAGTCCTCAGTTTGGCTTGGGTTGAAAGGAGTTTGGAAGACTCTACTCTCCAAGCTTCGATGGATAGTTGGTGATGGCGCTTCGGTCAGGCTCTGGAAAGACAATTGGATGGGAGAGATATTGGGGGAAGCATTTAATTTGAGCTCCCAGGAATTAGCTAATCTTGACAATACTATTAGTGAGTTCATTGTTGCGGGTAAGTGGGTACTTCCTGATATTTTTGCTCAAGTGTTTCCTGAGATAGGTGCGTCTCTTACTTCCATTACACTACCTTTCGTGCCAACTAATGATCAAGTGGTTTGGTCTGAATCTTCTTCTGGTACTTTGACATCAAGGGAGGCTTACTTGACTTTGGTCTCTTCATCTCCCCCATTAGCTTGGGGCTCTCTAATTTGGCATGCAGTGATCCAACCACGGAAGAGTATTTGCTCTTGGAAAATTTTACATAAGAAAATTCTTACGGATGCGAGGCTTCAGAGACTGGGTGTTTCCCTTTGTTCTAGGTGTAGTCTTTGTGGGGCAGGATTTGAAAATTGGTGTCACTTGTTTTTGGGATGCCCAGCAGTGTTAGAGGTTTGGAAGTGGTGTTTTGGCATGTTTAATATTGCATTCCATCAGCCGGCCTCCTTGCATGATATAATTAATATAGATTTCATCTCCCACCTCTCCACTTCTTCCAAGCTTCTTTGGCGCATAGTGGTGTGCAATGTTTTGTGGTGTGTTTGGTCAGAGAGAAATCGCTTGCGGCATGATGGCGGTATGTTTATCTGGAGTAATTTCATGCATTTTTTAACCTCAGCTTTACGGGAGTCGGCTAGCTTGGCCTTTGCATCATCCAACTCTCAATCTGGGCCTCCTATTTTTGGTCTCCTGCATCTTTCGCCTCTGAGGCCTTGTGCCCCTGAGTTTACTATGGTCACTTGGCTGCCTCCGCCATCTCCATGGATAAAAGTTAATGTCGATGGGTCGTTCAGATGTCAAGACCAGGCAGGCTTTGGCGGCATAGCCCGGGATCATGACGGTGCTTTCATCTTTGCCTTCGCTTCACGTGTGTGTGTTCCCAGTTCTCTCGATGCTGACGTACTGGCCTTTATTGAAGCTATAAAGGTGGCCATGTTGCAGGAATGGCAGTATGTGTGGGTCGAAACGGACTCAGCAGTTCTCCTGAGGTATTTTGTTTCTCCAAATCTGATTCCTTGGCGGCTGCGTGTACAATGGTTCAATTGTCTAGCTCTTGCTCAACAGTTGCATCTGCATGTTTCTCACATCTTTAGGGAAGGAAATTCTCCTGCTGATACGTTGGCTAATTACGGAGCCTCGCATGTGGGAAGGAGTACGTGGTCTTCTTTACCTTCAGTCTTGGCAGTTGACTATGGGCGTGACTTCTCATCTAGGCCAATCTATAGCTGGAGACTACATCACCGCCTTGAGCTTGCTGGATTTCAATACCTTGGTAGACCAGTGAGTCCAGTCTGCTACAGGAATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006928 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016477 GO:0016567 GO:0016740 GO:0018996 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030054 GO:0030154 GO:0030163 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040011 GO:0040039 GO:0042175 GO:0042221 GO:0042303 GO:0042692 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043292 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044449 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0048870 GO:0050896 GO:0051146 GO:0051179 GO:0051603 GO:0051674 GO:0051716 GO:0051788 GO:0055001 GO:0055002 GO:0055120 GO:0061061 GO:0061630 GO:0061659 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0099080 GO:0099081 GO:0099512 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3

Protein Analysis

614

Amino Acids

69.4

Weight (kDa)

9.02

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	228 - 311	2.1e-16	zinc-binding in reverse transcriptase
RVT_3	PF13456	437 - 555	2.1e-16	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19310
fragaria_vesca	FvH4_2g40351 FvH4_2g40351 FvH4_2g40351
malus_domestica	MD08G1036700.v1.1
prunus_persica	Prupe.1G384000_v2.0.a1
pyrus_communis	pycom08g02930 pycom15g02870
rosa_chinensis	RchiOBHm_Chr6g0300391
rosa_laevigata	RLG00000011342
rosa_multiflora	Rmu_sc0001670.1_g000013
rosa_roxburghii	Rroxscaffold_7G00167840
rosa_rugosa	Rorug06G0295600
rosa_samantha	Rh6AG408300 Rh6BG415600 Rh6CG423000 Rh6DG408600
rosa_wichuraiana	Rw6G035710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	351
AasI	GACNNNNNNGTC	1 cut(s)	1818
AccI	GTMKAC	1 cut(s)	1810
AciI	CCGC	7 cut(s)	548, 1099, 1110, 1286, 1353, 1555, 1777
AclWI	GGATC	4 cut(s)	137, 186, 754, 1374
AcoI	YGGCCR	1 cut(s)	1464
AcsI	RAATTY	4 cut(s)	792, 807, 1636, 1837
AcuI	CTGAAG	2 cut(s)	812, 1692
AcvI	CACGTG	1 cut(s)	1403
AfaI	GTAC	6 cut(s)	91, 561, 676, 1437, 1566, 1690
AfiI	CCNNNNNNNGG	4 cut(s)	366, 596, 973, 1217
AflII	CTTAAG	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	1402
AgeI	ACCGGT	1 cut(s)	312
AgsI	TTSAA	7 cut(s)	47, 100, 379, 884, 1451, 1576, 1799
AjnI	CCWGG	3 cut(s)	80, 501, 1338
AleI	CACNNNNGTG	1 cut(s)	1405
Alw21I	GWGCWC	1 cut(s)	500
Alw26I	GTCTC	5 cut(s)	609, 715, 826, 1226, 1759
AlwI	GGATC	4 cut(s)	137, 186, 754, 1374
AlwNI	CAGNNNCTG	2 cut(s)	447, 835
Ama87I	CYCGRG	1 cut(s)	1362
AoxI	GGCC	8 cut(s)	83, 975, 1176, 1205, 1244, 1440, 1464, 1748
ApeKI	GCWGC	5 cut(s)	14, 161, 293, 1279, 1558
ApoI	RAATTY	4 cut(s)	792, 807, 1636, 1837
AseI	ATTAAT	2 cut(s)	29, 996
AsiGI	ACCGGT	1 cut(s)	312
AspLEI	GCGC	2 cut(s)	434, 1047
AspS9I	GGNCC	1 cut(s)	1205
AsuC2I	CCSGG	2 cut(s)	1363, 1364
AsuHPI	GGTGA	2 cut(s)	437, 1766
AsuNHI	GCTAGC	1 cut(s)	1169
AvaI	CYCGRG	1 cut(s)	1362
AxyI	CCTNAGG	1 cut(s)	1520
BaeGI	GKGCMC	1 cut(s)	1255
BalI	TGGCCA	1 cut(s)	1466
BanII	GRGCYC	2 cut(s)	500, 740
BarI	GAAGNNNNNNTAC	2 cut(s)	1681, 1713
BbrPI	CACGTG	1 cut(s)	1403
BbsI	GAAGAC	2 cut(s)	398, 1689
Bbv12I	GWGCWC	1 cut(s)	500
BbvCI	CCTCAGC	1 cut(s)	1150
BbvI	GCAGC	5 cut(s)	26, 148, 305, 1266, 1545
BccI	CCATC	7 cut(s)	408, 422, 457, 975, 1100, 1297, 1310
BciT130I	CCWGG	3 cut(s)	82, 503, 1340
BclI	TGATCA	1 cut(s)	643
BcnI	CCSGG	2 cut(s)	1363, 1364
BcoDI	GTCTC	5 cut(s)	609, 715, 826, 1226, 1759
BfaI	CTAG	5 cut(s)	279, 855, 1170, 1583, 1746
BfmI	CTRYAG	3 cut(s)	291, 1756, 1831
BfoI	RGCGCY	1 cut(s)	435
BfrI	CTTAAG	1 cut(s)	218
BglI	GCCNNNNNGGC	1 cut(s)	1243
BisI	GCNGC	8 cut(s)	15, 162, 294, 1100, 1280, 1354, 1556, 1559
BlsI	GCNGC	8 cut(s)	16, 163, 295, 1101, 1281, 1355, 1557, 1560
Bme1390I	CCNGG	5 cut(s)	82, 503, 1340, 1363, 1364
BmeT110I	CYCGRG	1 cut(s)	1362
BmgT120I	GGNCC	1 cut(s)	1205
BmiI	GGNNCC	1 cut(s)	1669
BmrFI	CCNGG	5 cut(s)	82, 503, 1340, 1363, 1364
BmrI	ACTGGG	2 cut(s)	845, 1410
BmsI	GCATC	6 cut(s)	808, 899, 1193, 1237, 1417, 1612
BmtI	GCTAGC	1 cut(s)	1173
BmuI	ACTGGG	2 cut(s)	845, 1410
BoxI	GACNNNNGTC	1 cut(s)	707
BpiI	GAAGAC	2 cut(s)	398, 1689
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
BpmI	CTGGAG	3 cut(s)	159, 1144, 1783
Bpu10I	CCTNAGC	1 cut(s)	1150
BpuEI	CTTGAG	2 cut(s)	564, 1802
BpuMI	CCSGG	2 cut(s)	1363, 1364
BsaAI	YACGTR	2 cut(s)	1403, 1692
BsaI	GGTCTC	2 cut(s)	715, 1226
BsaJI	CCNNGG	7 cut(s)	195, 501, 767, 1295, 1362, 1550, 1804
BsaWI	WCCGGW	1 cut(s)	312
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 260, 290
Bsc4I	CCNNNNNNNGG	4 cut(s)	366, 596, 973, 1217
Bse118I	RCCGGY	2 cut(s)	312, 973
Bse1I	ACTGG	7 cut(s)	142, 171, 840, 1416, 1443, 1814, 1823
Bse21I	CCTNAGG	1 cut(s)	1520
Bse3DI	GCAATG	1 cut(s)	1066
BseBI	CCWGG	3 cut(s)	82, 503, 1340
BseDI	CCNNGG	7 cut(s)	195, 501, 767, 1295, 1362, 1550, 1804
BseGI	GGATG	4 cut(s)	468, 823, 914, 1187
BseLI	CCNNNNNNNGG	4 cut(s)	366, 596, 973, 1217
BseMI	GCAATG	1 cut(s)	1066
BseMII	CTCAG	7 cut(s)	375, 582, 1164, 1232, 1248, 1511, 1521
BseNI	ACTGG	7 cut(s)	142, 171, 840, 1416, 1443, 1814, 1823
BseRI	GAGGAG	1 cut(s)	219
BseSI	GKGCMC	1 cut(s)	1255
BseXI	GCAGC	5 cut(s)	26, 148, 305, 1266, 1545
BseYI	CCCAGC	1 cut(s)	913
BsgI	GTGCAG	1 cut(s)	147
BshFI	GGCC	8 cut(s)	85, 977, 1178, 1207, 1246, 1442, 1466, 1750
BshTI	ACCGGT	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	500
BsiHKCI	CYCGRG	1 cut(s)	1362
BsiSI	CCGG	3 cut(s)	313, 974, 1363
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	4 cut(s)	366, 596, 973, 1217
BsmAI	GTCTC	5 cut(s)	609, 715, 826, 1226, 1759
BsmBI	CGTCTC	1 cut(s)	609
BsmFI	GGGAC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	962
BsnI	GGCC	8 cut(s)	85, 977, 1178, 1207, 1246, 1442, 1466, 1750
Bso31I	GGTCTC	2 cut(s)	715, 1226
BsoBI	CYCGRG	1 cut(s)	1362
Bsp1286I	GDGCHC	3 cut(s)	500, 740, 1255
Bsp1407I	TGTACA	1 cut(s)	1564
Bsp143I	GATC	5 cut(s)	142, 178, 643, 759, 1366
Bsp19I	CCATGG	1 cut(s)	1295
BspACI	CCGC	7 cut(s)	548, 1099, 1110, 1286, 1353, 1555, 1777
BspANI	GGCC	8 cut(s)	85, 977, 1178, 1207, 1246, 1442, 1466, 1750
BspCNI	CTCAG	7 cut(s)	374, 583, 1163, 1233, 1249, 1512, 1520
BspHI	TCATGA	1 cut(s)	1369
BspLI	GGNNCC	1 cut(s)	1669
BspMAI	CTGCAG	1 cut(s)	295
BspOI	GCTAGC	1 cut(s)	1173
BspPI	GGATC	4 cut(s)	137, 186, 754, 1374
BspTI	CTTAAG	1 cut(s)	218
BspTNI	GGTCTC	2 cut(s)	715, 1226
BsrDI	GCAATG	1 cut(s)	1066
BsrFI	RCCGGY	2 cut(s)	312, 973
BsrGI	TGTACA	1 cut(s)	1564
BsrI	ACTGG	7 cut(s)	142, 171, 840, 1416, 1443, 1814, 1823
BssAI	RCCGGY	2 cut(s)	312, 973
BssECI	CCNNGG	7 cut(s)	195, 501, 767, 1295, 1362, 1550, 1804
BssMI	GATC	5 cut(s)	142, 178, 643, 759, 1366
BssT1I	CCWWGG	4 cut(s)	195, 1295, 1550, 1804
Bst2UI	CCWGG	3 cut(s)	82, 503, 1340
Bst4CI	ACNGT	4 cut(s)	114, 325, 1376, 1599
Bst6I	CTCTTC	2 cut(s)	718, 767
BstAFI	CTTAAG	1 cut(s)	218
BstAUI	TGTACA	1 cut(s)	1564
BstBAI	YACGTR	2 cut(s)	1403, 1692
BstC8I	GCNNGC	7 cut(s)	298, 753, 975, 1097, 1171, 1345, 1788
BstDEI	CTNAG	7 cut(s)	361, 591, 1150, 1241, 1257, 1507, 1520
BstDSI	CCRYGG	2 cut(s)	767, 1295
BstENI	CCTNNNNNAGG	1 cut(s)	594
BstF5I	GGATG	4 cut(s)	468, 823, 914, 1187
BstH2I	RGCGCY	1 cut(s)	435
BstHHI	GCGC	2 cut(s)	434, 1047
BstKTI	GATC	5 cut(s)	145, 181, 646, 762, 1369
BstMAI	GTCTC	5 cut(s)	609, 715, 826, 1226, 1759
BstMBI	GATC	5 cut(s)	142, 178, 643, 759, 1366
BstMWI	GCNNNNNNNGC	8 cut(s)	290, 1042, 1175, 1234, 1243, 1285, 1353, 1480
BstNI	CCWGG	3 cut(s)	82, 503, 1340
BstNSI	RCATGY	4 cut(s)	755, 952, 1613, 1679
BstPAI	GACNNNNGTC	1 cut(s)	707
BstSCI	CCNGG	5 cut(s)	80, 501, 1338, 1361, 1362
BstSFI	CTRYAG	3 cut(s)	291, 1756, 1831
BstSLI	GKGCMC	1 cut(s)	1255
BstV1I	GCAGC	5 cut(s)	26, 148, 305, 1266, 1545
BstV2I	GAAGAC	2 cut(s)	398, 1689
BstX2I	RGATCY	1 cut(s)	142
BstXI	CCANNNNNNTGG	2 cut(s)	732, 1296
BstYI	RGATCY	1 cut(s)	142
Bsu36I	CCTNAGG	1 cut(s)	1520
BsuRI	GGCC	8 cut(s)	85, 977, 1178, 1207, 1246, 1442, 1466, 1750
BtgI	CCRYGG	2 cut(s)	767, 1295
BtsCI	GGATG	4 cut(s)	468, 823, 914, 1187
BtsI	GCAGTG	2 cut(s)	762, 924
BtsIMutI	CAGTG	4 cut(s)	164, 762, 924, 1821
Cac8I	GCNNGC	7 cut(s)	298, 753, 975, 1097, 1171, 1345, 1788
CaiI	CAGNNNCTG	2 cut(s)	447, 835
CciI	TCATGA	1 cut(s)	1369
CfoI	GCGC	2 cut(s)	434, 1047
Cfr10I	RCCGGY	2 cut(s)	312, 973
Cfr13I	GGNCC	1 cut(s)	1205
Cfr9I	CCCGGG	1 cut(s)	1362
CseI	GACGC	1 cut(s)	591
Csp6I	GTAC	6 cut(s)	90, 560, 675, 1436, 1565, 1689
CspAI	ACCGGT	1 cut(s)	312
CviQI	GTAC	6 cut(s)	90, 560, 675, 1436, 1565, 1689
DdeI	CTNAG	7 cut(s)	361, 591, 1150, 1241, 1257, 1507, 1520
DpnI	GATC	5 cut(s)	144, 180, 645, 761, 1368
DpnII	GATC	5 cut(s)	142, 178, 643, 759, 1366
DraI	TTTAAA	1 cut(s)	237
DrdI	GACNNNNNNGTC	1 cut(s)	1818
DseDI	GACNNNNNNGTC	1 cut(s)	1818
EaeI	YGGCCR	1 cut(s)	1464
Eam1104I	CTCTTC	2 cut(s)	718, 767
EarI	CTCTTC	2 cut(s)	718, 767
EciI	GGCGGA	1 cut(s)	1275
Ecl136II	GAGCTC	1 cut(s)	498
Eco130I	CCWWGG	4 cut(s)	195, 1295, 1550, 1804
Eco147I	AGGCCT	1 cut(s)	1246
Eco24I	GRGCYC	2 cut(s)	500, 740
Eco31I	GGTCTC	2 cut(s)	715, 1226
Eco53kI	GAGCTC	1 cut(s)	498
Eco57I	CTGAAG	2 cut(s)	812, 1692
Eco72I	CACGTG	1 cut(s)	1403
Eco81I	CCTNAGG	1 cut(s)	1520
Eco88I	CYCGRG	1 cut(s)	1362
EcoICRI	GAGCTC	1 cut(s)	498
EcoNI	CCTNNNNNAGG	1 cut(s)	594
EcoRII	CCWGG	3 cut(s)	80, 501, 1338
EcoT14I	CCWWGG	4 cut(s)	195, 1295, 1550, 1804
EcoT22I	ATGCAT	1 cut(s)	1140
EcoT38I	GRGCYC	2 cut(s)	500, 740
ErhI	CCWWGG	4 cut(s)	195, 1295, 1550, 1804
Esp3I	CGTCTC	1 cut(s)	609
FalI	AAGNNNNNCTT	2 cut(s)	679, 711
FaqI	GGGAC	1 cut(s)	229
FauI	CCCGC	1 cut(s)	541
FbaI	TGATCA	1 cut(s)	643
FblI	GTMKAC	1 cut(s)	1810
Fnu4HI	GCNGC	8 cut(s)	15, 162, 294, 1100, 1280, 1354, 1556, 1559
FokI	GGATG	4 cut(s)	475, 830, 921, 1174
FriOI	GRGCYC	2 cut(s)	500, 740
Fsp4HI	GCNGC	8 cut(s)	15, 162, 294, 1100, 1280, 1354, 1556, 1559
FspBI	CTAG	5 cut(s)	279, 855, 1170, 1583, 1746
GlaI	GCGC	2 cut(s)	433, 1046
GluI	GCNGC	8 cut(s)	15, 162, 294, 1100, 1280, 1354, 1556, 1559
GsaI	CCCAGC	1 cut(s)	917
GsuI	CTGGAG	3 cut(s)	159, 1144, 1783
HaeII	RGCGCY	1 cut(s)	435
HaeIII	GGCC	8 cut(s)	85, 977, 1178, 1207, 1246, 1442, 1466, 1750
HapII	CCGG	3 cut(s)	313, 974, 1363
HgaI	GACGC	1 cut(s)	591
HhaI	GCGC	2 cut(s)	434, 1047
Hin6I	GCGC	2 cut(s)	432, 1045
HinP1I	GCGC	2 cut(s)	432, 1045
HincII	GTYRAC	2 cut(s)	191, 1723
HindII	GTYRAC	2 cut(s)	191, 1723
HindIII	AAGCTT	2 cut(s)	407, 1034
HinfI	GANTC	9 cut(s)	35, 118, 223, 394, 662, 1163, 1505, 1546, 1819
HpaII	CCGG	3 cut(s)	313, 974, 1363
HphI	GGTGA	2 cut(s)	437, 1766
Hpy166II	GTNNAC	5 cut(s)	191, 1263, 1565, 1723, 1811
Hpy188I	TCNGA	7 cut(s)	661, 831, 1084, 1242, 1328, 1545, 1844
Hpy8I	GTNNAC	5 cut(s)	191, 1263, 1565, 1723, 1811
HpyAV	CCTTC	6 cut(s)	94, 257, 1402, 1625, 1677, 1716
HpyCH4III	ACNGT	4 cut(s)	114, 325, 1376, 1599
HpyCH4IV	ACGT	4 cut(s)	1402, 1434, 1652, 1691
HpyF10VI	GCNNNNNNNGC	8 cut(s)	290, 1042, 1175, 1234, 1243, 1285, 1353, 1480
HpyF3I	CTNAG	7 cut(s)	361, 591, 1150, 1241, 1257, 1507, 1520
HpySE526I	ACGT	4 cut(s)	1402, 1434, 1652, 1691
HspAI	GCGC	2 cut(s)	432, 1045
KroI	GCCGGC	1 cut(s)	973
KroNI	GCCGGC	1 cut(s)	975
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	5 cut(s)	142, 178, 643, 759, 1366
LmnI	GCTCC	2 cut(s)	503, 1667
Lsp1109I	GCAGC	5 cut(s)	26, 148, 305, 1266, 1545
LweI	GCATC	6 cut(s)	808, 899, 1193, 1237, 1417, 1612
MaeI	CTAG	5 cut(s)	279, 855, 1170, 1583, 1746
MaeII	ACGT	4 cut(s)	1402, 1434, 1652, 1691
MaeIII	GTNAC	3 cut(s)	893, 1270, 1733
MalI	GATC	5 cut(s)	144, 180, 645, 761, 1368
MboI	GATC	5 cut(s)	142, 178, 643, 759, 1366
MboII	GAAGA	7 cut(s)	403, 657, 660, 705, 784, 1020, 1689
MfeI	CAATTG	2 cut(s)	457, 1576
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	3 cut(s)	500, 740, 1255
MlsI	TGGCCA	1 cut(s)	1466
MluNI	TGGCCA	1 cut(s)	1466
MlyI	GAGTC	5 cut(s)	44, 388, 1172, 1499, 1828
MmeI	TCCRAC	2 cut(s)	787, 1215
Mox20I	TGGCCA	1 cut(s)	1466
Mph1103I	ATGCAT	1 cut(s)	1140
MroNI	GCCGGC	1 cut(s)	973
MscI	TGGCCA	1 cut(s)	1466
MseI	TTAA	9 cut(s)	29, 219, 236, 254, 489, 954, 996, 1145, 1308
MslI	CAYNNNNRTG	5 cut(s)	1052, 1294, 1374, 1405, 1608
Msp20I	TGGCCA	1 cut(s)	1466
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	3 cut(s)	313, 974, 1363
MspR9I	CCNGG	5 cut(s)	82, 503, 1340, 1363, 1364
MunI	CAATTG	2 cut(s)	457, 1576
Mva1269I	GAATGC	1 cut(s)	962
MvaI	CCWGG	3 cut(s)	82, 503, 1340
MwoI	GCNNNNNNNGC	8 cut(s)	290, 1042, 1175, 1234, 1243, 1285, 1353, 1480
NaeI	GCCGGC	1 cut(s)	975
NciI	CCSGG	2 cut(s)	1363, 1364
NcoI	CCATGG	1 cut(s)	1295
NdeII	GATC	5 cut(s)	142, 178, 643, 759, 1366
NgoMIV	GCCGGC	1 cut(s)	973
NheI	GCTAGC	1 cut(s)	1169
NlaIV	GGNNCC	1 cut(s)	1669
NmuCI	GTSAC	3 cut(s)	893, 1270, 1733
NsiI	ATGCAT	1 cut(s)	1140
NspI	RCATGY	4 cut(s)	755, 952, 1613, 1679
OliI	CACNNNNGTG	1 cut(s)	1405
PaeI	GCATGC	1 cut(s)	755
PagI	TCATGA	1 cut(s)	1369
PceI	AGGCCT	1 cut(s)	1246
PcsI	WCGNNNNNNNCGW	2 cut(s)	118, 1431
PctI	GAATGC	1 cut(s)	962
PdiI	GCCGGC	1 cut(s)	975
PfeI	GAWTC	4 cut(s)	118, 223, 662, 1546
PinAI	ACCGGT	1 cut(s)	312
PkrI	GCNGC	8 cut(s)	16, 163, 295, 1101, 1281, 1355, 1557, 1560
PleI	GAGTC	5 cut(s)	43, 388, 1171, 1499, 1827
PmaCI	CACGTG	1 cut(s)	1403
PmlI	CACGTG	1 cut(s)	1403
PpsI	GAGTC	5 cut(s)	43, 388, 1171, 1499, 1827
Ppu21I	YACGTR	2 cut(s)	1403, 1692
PshAI	GACNNNNGTC	1 cut(s)	707
PshBI	ATTAAT	2 cut(s)	29, 996
PsiI	TTATAA	1 cut(s)	351
Psp124BI	GAGCTC	1 cut(s)	500
Psp6I	CCWGG	3 cut(s)	80, 501, 1338
PspCI	CACGTG	1 cut(s)	1403
PspFI	CCCAGC	1 cut(s)	913
PspGI	CCWGG	3 cut(s)	80, 501, 1338
PspN4I	GGNNCC	1 cut(s)	1669
PspPI	GGNCC	1 cut(s)	1205
PstI	CTGCAG	1 cut(s)	295
PstNI	CAGNNNCTG	2 cut(s)	447, 835
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	6 cut(s)	91, 561, 676, 1437, 1566, 1690
RsaNI	GTAC	6 cut(s)	90, 560, 675, 1436, 1565, 1689
RseI	CAYNNNNRTG	5 cut(s)	1052, 1294, 1374, 1405, 1608
SacI	GAGCTC	1 cut(s)	500
SaqAI	TTAA	9 cut(s)	29, 219, 236, 254, 489, 954, 996, 1145, 1308
SatI	GCNGC	8 cut(s)	15, 162, 294, 1100, 1280, 1354, 1556, 1559
Sau3AI	GATC	5 cut(s)	142, 178, 643, 759, 1366
Sau96I	GGNCC	1 cut(s)	1205
SchI	GAGTC	5 cut(s)	44, 388, 1172, 1499, 1828
ScrFI	CCNGG	5 cut(s)	82, 503, 1340, 1363, 1364
SduI	GDGCHC	3 cut(s)	500, 740, 1255
SfaNI	GCATC	6 cut(s)	808, 899, 1193, 1237, 1417, 1612
SfcI	CTRYAG	3 cut(s)	291, 1756, 1831
SmaI	CCCGGG	1 cut(s)	1364
SmiMI	CAYNNNNRTG	5 cut(s)	1052, 1294, 1374, 1405, 1608
SmlI	CTYRAG	4 cut(s)	9, 218, 579, 1781
SmoI	CTYRAG	4 cut(s)	9, 218, 579, 1781
SphI	GCATGC	1 cut(s)	755
SseBI	AGGCCT	1 cut(s)	1246
SsiI	CCGC	7 cut(s)	548, 1099, 1110, 1286, 1353, 1555, 1777
SspI	AATATT	1 cut(s)	958
SspMI	CTAG	5 cut(s)	279, 855, 1170, 1583, 1746
SstI	GAGCTC	1 cut(s)	500
StuI	AGGCCT	1 cut(s)	1246
StyD4I	CCNGG	5 cut(s)	80, 501, 1338, 1361, 1362
StyI	CCWWGG	4 cut(s)	195, 1295, 1550, 1804
TaaI	ACNGT	4 cut(s)	114, 325, 1376, 1599
TaiI	ACGT	4 cut(s)	1405, 1437, 1655, 1694
TaqI	TCGA	4 cut(s)	412, 1314, 1425, 1497
TaqII	GACCGA	1 cut(s)	427
TatI	WGTACW	1 cut(s)	1564
TauI	GCSGC	3 cut(s)	1102, 1356, 1558
TfiI	GAWTC	4 cut(s)	118, 223, 662, 1546
Tru1I	TTAA	9 cut(s)	29, 219, 236, 254, 489, 954, 996, 1145, 1308
Tru9I	TTAA	9 cut(s)	29, 219, 236, 254, 489, 954, 996, 1145, 1308
TscAI	CASTG	4 cut(s)	171, 762, 924, 1821
TseFI	GTSAC	3 cut(s)	893, 1270, 1733
TseI	GCWGC	5 cut(s)	14, 161, 293, 1279, 1558
Tsp45I	GTSAC	3 cut(s)	893, 1270, 1733
TspDTI	ATGAA	5 cut(s)	529, 705, 997, 1123, 1372
TspGWI	ACGGA	4 cut(s)	784, 830, 1517, 1680
TspMI	CCCGGG	1 cut(s)	1362
TspRI	CASTG	4 cut(s)	171, 762, 924, 1821
Vha464I	CTTAAG	1 cut(s)	218
VspI	ATTAAT	2 cut(s)	29, 996
XagI	CCTNNNNNAGG	1 cut(s)	594
XapI	RAATTY	4 cut(s)	792, 807, 1636, 1837
XbaI	TCTAGA	1 cut(s)	278
XceI	RCATGY	4 cut(s)	755, 952, 1613, 1679
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1346, 1758
XmaI	CCCGGG	1 cut(s)	1362
XmiI	GTMKAC	1 cut(s)	1810
XspI	CTAG	5 cut(s)	279, 855, 1170, 1583, 1746
Zsp2I	ATGCAT	1 cut(s)	1140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.