Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001670.1

Orthogroup ID

OG0012826

Physical Location & Seq

Genomic Coordinates Forward (+)

59898 .. 62118

Gene Structure 2221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001670.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atgattcgccacattcgaagcacctgtgatttaccttcagtaactgagaaaccaacagtcatgtatgaagacaatactgcttgtattgctcagattaaagaaggattcatcaaaggtgacaagactaagcatatcgcgccaaatggaagggatcggattgagacgactctcgaagctatcaagcgacgcatgcaaagatcagggggagattgcaatcagggggagcatcaagaaacatgctacctaggacatatgcgcattgtgctctttttgtccttcgaccaggctctaatcctccttctatgtaaaggtatggcaagtggttttggggattcagcgagcaggccatcccaatcacaagggccttctttctccagcagtaacactaataacggggatgctggtaatttcgaatgcaatatctgctttgacttagcccaagacccaattgttaccctatgcggccatcttttctgctggccgtgcctttacaaatggctccacattcactcccattctcaggaatgccctgtttgcaaagccgtcgtgaaggaggagagtttggtccccttgtatggtaggggaaagacatctactgacccaagatcaaggtcaattcctggagttaatattccaaatcgtccagcggggcaaaggcctgaaacagctcctccaccagaacaaaaccatttcgcccaacgtgggtttggattcatgggaggtttgggagggtttgctccaccaattgcaaccacaacaaggtttggcaatttcaccttctctgcagcttttggtggccttttcccgtctttgttaaattttcagatgcatggatttcctgatgctcccgtgtatggtacaagtgctggatttcatcatgggtttcataatacagttcatggcccccatggacatagatacaatttgcgaccgggtcctcgtgtgggtcgtccagctgtggttcaagattattacctgaagatgttgattatgtttgttgtagcttgtgctcttatggctcttttgtggcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006928 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016477 GO:0016567 GO:0016740 GO:0018996 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030054 GO:0030154 GO:0030163 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040011 GO:0040039 GO:0042175 GO:0042221 GO:0042303 GO:0042692 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043292 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044449 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0048870 GO:0050896 GO:0051146 GO:0051179 GO:0051603 GO:0051674 GO:0051716 GO:0051788 GO:0055001 GO:0055002 GO:0055120 GO:0061061 GO:0061630 GO:0061659 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0099080 GO:0099081 GO:0099512 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3

Protein Analysis

344

Amino Acids

37.88

Weight (kDa)

8.67

Isoelectric Point (pI)

56.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19310
fragaria_vesca	FvH4_2g40351 FvH4_2g40351 FvH4_2g40351
malus_domestica	MD08G1036700.v1.1
prunus_persica	Prupe.1G384000_v2.0.a1
pyrus_communis	pycom08g02930 pycom15g02870
rosa_chinensis	RchiOBHm_Chr6g0300391
rosa_laevigata	RLG00000011342
rosa_multiflora	Rmu_sc0001670.1_g000013
rosa_roxburghii	Rroxscaffold_7G00167840
rosa_rugosa	Rorug06G0295600
rosa_samantha	Rh6AG408300 Rh6BG415600 Rh6CG423000 Rh6DG408600
rosa_wichuraiana	Rw6G035710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	257
AccII	CGCG	1 cut(s)	137
AciI	CCGC	2 cut(s)	462, 647
AclWI	GGATC	1 cut(s)	159
AcoI	YGGCCR	2 cut(s)	463, 479
AcsI	RAATTY	1 cut(s)	817
AcuI	CTGAAG	2 cut(s)	21, 998
AfaI	GTAC	1 cut(s)	859
AfiI	CCNNNNNNNGG	6 cut(s)	520, 575, 702, 759, 854, 944
AgsI	TTSAA	1 cut(s)	965
AjnI	CCWGG	2 cut(s)	282, 619
AluBI	AGCT	5 cut(s)	176, 668, 788, 956, 1004
AluI	AGCT	5 cut(s)	176, 668, 788, 956, 1004
Alw21I	GWGCWC	2 cut(s)	267, 1012
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	159
AlwNI	CAGNNNCTG	1 cut(s)	44
AoxI	GGCC	7 cut(s)	344, 362, 463, 479, 656, 796, 901
ApeKI	GCWGC	1 cut(s)	785
ApoI	RAATTY	1 cut(s)	817
AspA2I	CCTAGG	1 cut(s)	244
AspLEI	GCGC	2 cut(s)	139, 258
AspS9I	GGNCC	4 cut(s)	362, 565, 902, 935
AsuC2I	CCSGG	1 cut(s)	933
AsuHPI	GGTGA	2 cut(s)	128, 766
AsuII	TTCGAA	2 cut(s)	16, 411
AvaII	GGWCC	2 cut(s)	565, 935
AvrII	CCTAGG	1 cut(s)	244
BauI	CACGAG	1 cut(s)	939
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	2 cut(s)	267, 1012
BbvI	GCAGC	1 cut(s)	797
BccI	CCATC	2 cut(s)	355, 474
BceAI	ACGGC	2 cut(s)	466, 527
BcgI	CGANNNNNNTGC	2 cut(s)	526, 560
BciT130I	CCWGG	2 cut(s)	284, 621
BcnI	CCSGG	1 cut(s)	933
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	783
BisI	GCNGC	2 cut(s)	463, 786
BlnI	CCTAGG	1 cut(s)	244
BlsI	GCNGC	2 cut(s)	464, 787
Bme1390I	CCNGG	3 cut(s)	284, 621, 933
Bme18I	GGWCC	2 cut(s)	565, 935
BmgT120I	GGNCC	4 cut(s)	362, 565, 902, 935
BmiI	GGNNCC	4 cut(s)	500, 567, 904, 936
BmrFI	CCNGG	3 cut(s)	284, 621, 933
BmsI	GCATC	4 cut(s)	235, 388, 816, 832
BpiI	GAAGAC	1 cut(s)	75
BpmI	CTGGAG	2 cut(s)	358, 642
Bpu14I	TTCGAA	2 cut(s)	16, 411
BpuMI	CCSGG	1 cut(s)	933
BsaBI	GATNNNNATC	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	244, 907
BsaXI	ACNNNNNCTCC	4 cut(s)	494, 524, 655, 685
Bsc4I	CCNNNNNNNGG	6 cut(s)	520, 575, 702, 759, 854, 944
Bse8I	GATNNNNATC	1 cut(s)	213
BseBI	CCWGG	2 cut(s)	284, 621
BseDI	CCNNGG	2 cut(s)	244, 907
BseGI	GGATG	2 cut(s)	347, 403
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	6 cut(s)	520, 575, 702, 759, 854, 944
BseMII	CTCAG	3 cut(s)	36, 104, 533
BseRI	GAGGAG	2 cut(s)	569, 660
BseXI	GCAGC	1 cut(s)	797
Bsh1236I	CGCG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	932
BshFI	GGCC	7 cut(s)	346, 364, 465, 481, 658, 798, 903
BsiEI	CGRYCG	1 cut(s)	932
BsiHKAI	GWGCWC	2 cut(s)	267, 1012
BsiSI	CCGG	1 cut(s)	932
BslFI	GGGAC	1 cut(s)	551
BslI	CCNNNNNNNGG	6 cut(s)	520, 575, 702, 759, 854, 944
BsmAI	GTCTC	1 cut(s)	155
BsmBI	CGTCTC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	551
BsmI	GAATGC	2 cut(s)	419, 530
BsnI	GGCC	7 cut(s)	346, 364, 465, 481, 658, 798, 903
Bsp119I	TTCGAA	2 cut(s)	16, 411
Bsp1286I	GDGCHC	2 cut(s)	267, 1012
Bsp143I	GATC	3 cut(s)	151, 197, 605
Bsp19I	CCATGG	1 cut(s)	907
BspACI	CCGC	2 cut(s)	462, 647
BspANI	GGCC	7 cut(s)	346, 364, 465, 481, 658, 798, 903
BspCNI	CTCAG	3 cut(s)	37, 103, 532
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	4 cut(s)	500, 567, 904, 936
BspMAI	CTGCAG	1 cut(s)	787
BspPI	GGATC	1 cut(s)	159
BspT104I	TTCGAA	2 cut(s)	16, 411
BssECI	CCNNGG	2 cut(s)	244, 907
BssMI	GATC	3 cut(s)	151, 197, 605
BssSI	CACGAG	1 cut(s)	939
BssT1I	CCWWGG	2 cut(s)	244, 907
Bst2BI	CACGAG	1 cut(s)	939
Bst2UI	CCWGG	2 cut(s)	284, 621
Bst4CI	ACNGT	2 cut(s)	58, 895
BstAPI	GCANNNNNTGC	1 cut(s)	423
BstBI	TTCGAA	2 cut(s)	16, 411
BstC8I	GCNNGC	4 cut(s)	191, 340, 344, 479
BstDEI	CTNAG	5 cut(s)	45, 90, 126, 433, 519
BstDSI	CCRYGG	1 cut(s)	907
BstF5I	GGATG	2 cut(s)	347, 403
BstFNI	CGCG	1 cut(s)	137
BstHHI	GCGC	2 cut(s)	139, 258
BstKTI	GATC	3 cut(s)	154, 200, 608
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	3 cut(s)	151, 197, 605
BstMCI	CGRYCG	1 cut(s)	932
BstMWI	GCNNNNNNNGC	8 cut(s)	86, 136, 190, 262, 423, 483, 534, 1016
BstNI	CCWGG	2 cut(s)	284, 621
BstNSI	RCATGY	2 cut(s)	193, 240
BstSCI	CCNGG	3 cut(s)	282, 619, 931
BstSFI	CTRYAG	1 cut(s)	783
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	797
BstV2I	GAAGAC	1 cut(s)	75
BsuRI	GGCC	7 cut(s)	346, 364, 465, 481, 658, 798, 903
BtgI	CCRYGG	1 cut(s)	907
BtsCI	GGATG	2 cut(s)	347, 403
Cac8I	GCNNGC	4 cut(s)	191, 340, 344, 479
CaiI	CAGNNNCTG	1 cut(s)	44
CfoI	GCGC	2 cut(s)	139, 258
Cfr13I	GGNCC	4 cut(s)	362, 565, 902, 935
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	858
CviAII	CATG	8 cut(s)	61, 190, 237, 715, 830, 878, 899, 908
CviQI	GTAC	1 cut(s)	858
DdeI	CTNAG	5 cut(s)	45, 90, 126, 433, 519
DpnI	GATC	3 cut(s)	153, 199, 607
DpnII	GATC	3 cut(s)	151, 197, 605
EaeI	YGGCCR	2 cut(s)	463, 479
Eco130I	CCWWGG	2 cut(s)	244, 907
Eco147I	AGGCCT	1 cut(s)	658
Eco47I	GGWCC	2 cut(s)	565, 935
Eco57I	CTGAAG	2 cut(s)	21, 998
EcoO109I	RGGNCCY	2 cut(s)	362, 935
EcoRII	CCWGG	2 cut(s)	282, 619
EcoT14I	CCWWGG	2 cut(s)	244, 907
EcoT22I	ATGCAT	1 cut(s)	831
ErhI	CCWWGG	2 cut(s)	244, 907
Esp3I	CGTCTC	1 cut(s)	155
FaeI	CATG	8 cut(s)	64, 193, 240, 718, 833, 881, 902, 911
FaqI	GGGAC	1 cut(s)	551
FatI	CATG	8 cut(s)	60, 189, 236, 714, 829, 877, 898, 907
FauI	CCCGC	1 cut(s)	640
FauNDI	CATATG	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	463, 786
FokI	GGATG	2 cut(s)	334, 410
Fsp4HI	GCNGC	2 cut(s)	463, 786
FspAI	RTGCGCAY	1 cut(s)	257
FspBI	CTAG	1 cut(s)	245
FspI	TGCGCA	1 cut(s)	257
GlaI	GCGC	2 cut(s)	138, 257
GluI	GCNGC	2 cut(s)	463, 786
GsuI	CTGGAG	2 cut(s)	358, 642
HaeIII	GGCC	7 cut(s)	346, 364, 465, 481, 658, 798, 903
HapII	CCGG	1 cut(s)	932
HgaI	GACGC	1 cut(s)	195
HhaI	GCGC	2 cut(s)	139, 258
Hin1II	CATG	8 cut(s)	64, 193, 240, 718, 833, 881, 902, 911
Hin6I	GCGC	2 cut(s)	137, 256
HinP1I	GCGC	2 cut(s)	137, 256
HinfI	GANTC	5 cut(s)	4, 105, 166, 332, 711
HpaII	CCGG	1 cut(s)	932
HphI	GGTGA	2 cut(s)	128, 766
Hpy188I	TCNGA	3 cut(s)	93, 156, 825
Hpy188III	TCNNGA	6 cut(s)	170, 230, 521, 547, 839, 965
Hpy99I	CGWCG	2 cut(s)	189, 548
HpyAV	CCTTC	8 cut(s)	45, 95, 141, 286, 308, 375, 544, 787
HpyCH4III	ACNGT	2 cut(s)	58, 895
HpyCH4IV	ACGT	1 cut(s)	700
HpyCH4V	TGCA	7 cut(s)	193, 213, 417, 537, 749, 785, 829
HpyF10VI	GCNNNNNNNGC	8 cut(s)	86, 136, 190, 262, 423, 483, 534, 1016
HpyF3I	CTNAG	5 cut(s)	45, 90, 126, 433, 519
HpySE526I	ACGT	1 cut(s)	700
Hsp92II	CATG	8 cut(s)	64, 193, 240, 718, 833, 881, 902, 911
HspAI	GCGC	2 cut(s)	137, 256
Kzo9I	GATC	3 cut(s)	151, 197, 605
LmnI	GCTCC	5 cut(s)	223, 504, 673, 742, 850
Lsp1109I	GCAGC	1 cut(s)	797
LweI	GCATC	4 cut(s)	235, 388, 816, 832
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	700
MaeIII	GTNAC	4 cut(s)	40, 116, 380, 451
MalI	GATC	3 cut(s)	153, 199, 607
MboI	GATC	3 cut(s)	151, 197, 605
MboII	GAAGA	2 cut(s)	80, 991
MfeI	CAATTG	2 cut(s)	447, 744
MhlI	GDGCHC	2 cut(s)	267, 1012
MluCI	AATT	7 cut(s)	406, 447, 615, 744, 769, 817, 922
MlyI	GAGTC	1 cut(s)	160
MnlI	CCTC	6 cut(s)	305, 547, 681, 713, 722, 948
Mph1103I	ATGCAT	1 cut(s)	831
MseI	TTAA	3 cut(s)	96, 627, 815
MspA1I	CMGCKG	2 cut(s)	647, 956
MspI	CCGG	1 cut(s)	932
MspR9I	CCNGG	3 cut(s)	284, 621, 933
MunI	CAATTG	2 cut(s)	447, 744
Mva1269I	GAATGC	2 cut(s)	419, 530
MvaI	CCWGG	2 cut(s)	284, 621
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	8 cut(s)	86, 136, 190, 262, 423, 483, 534, 1016
NciI	CCSGG	1 cut(s)	933
NcoI	CCATGG	1 cut(s)	907
NdeI	CATATG	1 cut(s)	252
NdeII	GATC	3 cut(s)	151, 197, 605
NlaIII	CATG	8 cut(s)	64, 193, 240, 718, 833, 881, 902, 911
NlaIV	GGNNCC	4 cut(s)	500, 567, 904, 936
NmuCI	GTSAC	1 cut(s)	116
NsbI	TGCGCA	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	831
NspI	RCATGY	2 cut(s)	193, 240
NspV	TTCGAA	2 cut(s)	16, 411
PaeI	GCATGC	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	658
PcsI	WCGNNNNNNNCGW	2 cut(s)	13, 946
PctI	GAATGC	2 cut(s)	419, 530
PfeI	GAWTC	4 cut(s)	4, 105, 332, 711
PflFI	GACNNNGTC	1 cut(s)	933
PfoI	TCCNGGA	1 cut(s)	619
PkrI	GCNGC	2 cut(s)	464, 787
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PpuMI	RGGWCCY	1 cut(s)	935
Psp5II	RGGWCCY	1 cut(s)	935
Psp6I	CCWGG	2 cut(s)	282, 619
PspGI	CCWGG	2 cut(s)	282, 619
PspN4I	GGNNCC	4 cut(s)	500, 567, 904, 936
PspPI	GGNCC	4 cut(s)	362, 565, 902, 935
PspPPI	RGGWCCY	1 cut(s)	935
PstI	CTGCAG	1 cut(s)	787
PstNI	CAGNNNCTG	1 cut(s)	44
PsyI	GACNNNGTC	1 cut(s)	933
PvuII	CAGCTG	1 cut(s)	956
RsaI	GTAC	1 cut(s)	859
RsaNI	GTAC	1 cut(s)	858
SaqAI	TTAA	3 cut(s)	96, 627, 815
SatI	GCNGC	2 cut(s)	463, 786
Sau3AI	GATC	3 cut(s)	151, 197, 605
Sau96I	GGNCC	4 cut(s)	362, 565, 902, 935
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	3 cut(s)	284, 621, 933
SduI	GDGCHC	2 cut(s)	267, 1012
SfaNI	GCATC	4 cut(s)	235, 388, 816, 832
SfcI	CTRYAG	1 cut(s)	783
SfuI	TTCGAA	2 cut(s)	16, 411
SinI	GGWCC	2 cut(s)	565, 935
SphI	GCATGC	1 cut(s)	193
Sse9I	AATT	7 cut(s)	406, 447, 615, 744, 769, 817, 922
SseBI	AGGCCT	1 cut(s)	658
SsiI	CCGC	2 cut(s)	462, 647
SspI	AATATT	1 cut(s)	631
SspMI	CTAG	1 cut(s)	245
StuI	AGGCCT	1 cut(s)	658
StyD4I	CCNGG	3 cut(s)	282, 619, 931
StyI	CCWWGG	2 cut(s)	244, 907
TaaI	ACNGT	2 cut(s)	58, 895
TaiI	ACGT	1 cut(s)	703
TaqI	TCGA	4 cut(s)	16, 171, 279, 411
TasI	AATT	7 cut(s)	406, 447, 615, 744, 769, 817, 922
TauI	GCSGC	1 cut(s)	465
TfiI	GAWTC	4 cut(s)	4, 105, 332, 711
Tru1I	TTAA	3 cut(s)	96, 627, 815
Tru9I	TTAA	3 cut(s)	96, 627, 815
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	785
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	6 cut(s)	81, 97, 703, 863, 875, 887
Tth111I	GACNNNGTC	1 cut(s)	933
VpaK11BI	GGWCC	2 cut(s)	565, 935
XapI	RAATTY	1 cut(s)	817
XceI	RCATGY	2 cut(s)	193, 240
XcmI	CCANNNNNNNNNTGG	1 cut(s)	704
XmaJI	CCTAGG	1 cut(s)	244
XspI	CTAG	1 cut(s)	245
Zsp2I	ATGCAT	1 cut(s)	831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.