Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012826

Physical Location & Seq

Genomic Coordinates Forward (+)

34471293 .. 34473057

Gene Structure 1765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G384000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCAAGTGGGTTCGGGGAATCAACGAGCAGGCCATCCCAAGGGCCTTCTTACTCCAGCAGCAACAATAACAACAGTGATGCTGGTAATTTTGAATGCAATATCTGCCTCGACTTGGCCCAAGACCCCATTGTCACCCTATGTGGCCATCTCTTCTGCTGGCCTTGCCTTTACAAATGGCTCCACATTCACTCCCACTCTCAGGAATGCCCTGTTTGCAAAGCCCTCATAAAGGAGGAGAATTTGGTGCCCTTATATGGTAGGGGAAAGACATCAACTGACCCAAGATCGAAGGCAATACCTGGTATTAATATCCCAAACCGTCCAGCAGGACAAAGACCTGAAACAGCTCCTCCACCAGAACCAAACCATTTTCCCCCGCGTGGGTTTGGATTCATGGGAGGCTTGGGGGGTTTGGGAGGTTTTGCACCCATTGCAACCACAAGGTTTGGGAATTTCACCTTTTCGGCGGCTTTTGGTGGCCTTATCCCATCTCTCTTAAATTTTCAGCTACATGGGTTTCCTGATGCTGCAATGTATGGTGCAACTGCTGGATTTCCTCATGGGTTCTCAAATTCATTTCCTGGCGGCCATCCACATAGATACCATATTCACAGGAGGGCTACAGGTCAAGGACAACAAGATTATTTCCTGAAGATGTTGTTTTTATTTGTTGTAGTTTGTGTACTTGTGGCTCTTATGTGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006928 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016477 GO:0016567 GO:0016740 GO:0018996 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030054 GO:0030154 GO:0030163 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040011 GO:0040039 GO:0042175 GO:0042221 GO:0042303 GO:0042692 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043292 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044449 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0048870 GO:0050896 GO:0051146 GO:0051179 GO:0051603 GO:0051674 GO:0051716 GO:0051788 GO:0055001 GO:0055002 GO:0055120 GO:0061061 GO:0061630 GO:0061659 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0099080 GO:0099081 GO:0099512 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3

Protein Analysis

237

Amino Acids

25.62

Weight (kDa)

8.45

Isoelectric Point (pI)

52.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19310
fragaria_vesca	FvH4_2g40351 FvH4_2g40351 FvH4_2g40351
malus_domestica	MD08G1036700.v1.1
prunus_persica	Prupe.1G384000_v2.0.a1
pyrus_communis	pycom08g02930 pycom15g02870
rosa_chinensis	RchiOBHm_Chr6g0300391
rosa_laevigata	RLG00000011342
rosa_multiflora	Rmu_sc0001670.1_g000013
rosa_roxburghii	Rroxscaffold_7G00167840
rosa_rugosa	Rorug06G0295600
rosa_samantha	Rh6AG408300 Rh6BG415600 Rh6CG423000 Rh6DG408600
rosa_wichuraiana	Rw6G035710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AccB1I	GGYRCC	1 cut(s)	247
AccII	CGCG	1 cut(s)	382
AciI	CCGC	3 cut(s)	380, 470, 588
AcoI	YGGCCR	2 cut(s)	145, 589
AcsI	RAATTY	4 cut(s)	241, 454, 502, 574
AcuI	CTGAAG	1 cut(s)	674
AfaI	GTAC	1 cut(s)	687
AfiI	CCNNNNNNNGG	7 cut(s)	41, 115, 202, 232, 257, 383, 384
AgsI	TTSAA	1 cut(s)	95
AjnI	CCWGG	2 cut(s)	301, 583
AluBI	AGCT	2 cut(s)	350, 511
AluI	AGCT	2 cut(s)	350, 511
AoxI	GGCC	7 cut(s)	32, 44, 117, 145, 161, 481, 589
ApeKI	GCWGC	2 cut(s)	60, 530
ApoI	RAATTY	4 cut(s)	241, 454, 502, 574
AseI	ATTAAT	1 cut(s)	309
AspS9I	GGNCC	2 cut(s)	44, 118
AsuHPI	GGTGA	2 cut(s)	127, 451
BaeGI	GKGCMC	1 cut(s)	252
BalI	TGGCCA	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	72, 517
BccI	CCATC	4 cut(s)	43, 156, 499, 600
BciT130I	CCWGG	2 cut(s)	303, 585
BfmI	CTRYAG	1 cut(s)	624
BisI	GCNGC	4 cut(s)	61, 471, 531, 589
BlsI	GCNGC	4 cut(s)	62, 472, 532, 590
Bme1390I	CCNGG	2 cut(s)	303, 585
BmgT120I	GGNCC	2 cut(s)	44, 118
BmiI	GGNNCC	2 cut(s)	182, 249
BmrFI	CCNGG	2 cut(s)	303, 585
BmsI	GCATC	2 cut(s)	70, 517
BpmI	CTGGAG	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	40
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 206, 337, 367
Bsc4I	CCNNNNNNNGG	7 cut(s)	41, 115, 202, 232, 257, 383, 384
Bse3DI	GCAATG	2 cut(s)	432, 540
BseBI	CCWGG	2 cut(s)	303, 585
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	2 cut(s)	35, 592
BseLI	CCNNNNNNNGG	7 cut(s)	41, 115, 202, 232, 257, 383, 384
BseMI	GCAATG	2 cut(s)	432, 540
BseMII	CTCAG	1 cut(s)	215
BseRI	GAGGAG	2 cut(s)	251, 342
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	2 cut(s)	72, 517
Bsh1236I	CGCG	1 cut(s)	382
BshFI	GGCC	7 cut(s)	34, 46, 119, 147, 163, 483, 591
BshNI	GGYRCC	1 cut(s)	247
BslI	CCNNNNNNNGG	7 cut(s)	41, 115, 202, 232, 257, 383, 384
BsmI	GAATGC	2 cut(s)	101, 212
BsnI	GGCC	7 cut(s)	34, 46, 119, 147, 163, 483, 591
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	1 cut(s)	287
BspACI	CCGC	3 cut(s)	380, 470, 588
BspANI	GGCC	7 cut(s)	34, 46, 119, 147, 163, 483, 591
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	182, 249
BspT107I	GGYRCC	1 cut(s)	247
BsrDI	GCAATG	2 cut(s)	432, 540
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	1 cut(s)	287
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	2 cut(s)	303, 585
Bst4CI	ACNGT	2 cut(s)	77, 323
Bst6I	CTCTTC	1 cut(s)	158
BstAPI	GCANNNNNTGC	2 cut(s)	105, 434
BstC8I	GCNNGC	2 cut(s)	32, 161
BstDEI	CTNAG	1 cut(s)	201
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	2 cut(s)	35, 592
BstFNI	CGCG	1 cut(s)	382
BstKTI	GATC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	287
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 165, 216, 434
BstNI	CCWGG	2 cut(s)	303, 585
BstSCI	CCNGG	2 cut(s)	301, 583
BstSFI	CTRYAG	1 cut(s)	624
BstSLI	GKGCMC	1 cut(s)	252
BstUI	CGCG	1 cut(s)	382
BstV1I	GCAGC	2 cut(s)	72, 517
BsuRI	GGCC	7 cut(s)	34, 46, 119, 147, 163, 483, 591
BtsCI	GGATG	2 cut(s)	35, 592
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	2 cut(s)	32, 161
Cfr13I	GGNCC	2 cut(s)	44, 118
CsiI	ACCWGGT	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	686
CspCI	CAANNNNNGTGG	2 cut(s)	430, 465
CviAII	CATG	3 cut(s)	397, 515, 563
CviQI	GTAC	1 cut(s)	686
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	289
DpnII	GATC	1 cut(s)	287
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	2 cut(s)	145, 589
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	674
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	301, 583
EcoT14I	CCWWGG	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	3 cut(s)	400, 518, 566
FatI	CATG	3 cut(s)	396, 514, 562
FauI	CCCGC	1 cut(s)	387
Fnu4HI	GCNGC	4 cut(s)	61, 471, 531, 589
FokI	GGATG	2 cut(s)	22, 579
Fsp4HI	GCNGC	4 cut(s)	61, 471, 531, 589
GluI	GCNGC	4 cut(s)	61, 471, 531, 589
GsuI	CTGGAG	1 cut(s)	40
HaeIII	GGCC	7 cut(s)	34, 46, 119, 147, 163, 483, 591
Hin1II	CATG	3 cut(s)	400, 518, 566
HinfI	GANTC	2 cut(s)	20, 393
HphI	GGTGA	2 cut(s)	127, 451
Hpy166II	GTNNAC	1 cut(s)	686
Hpy188III	TCNNGA	3 cut(s)	203, 524, 652
Hpy8I	GTNNAC	1 cut(s)	686
HpyAV	CCTTC	2 cut(s)	57, 286
HpyCH4III	ACNGT	2 cut(s)	77, 323
HpyCH4V	TGCA	6 cut(s)	99, 219, 428, 437, 533, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 165, 216, 434
HpyF3I	CTNAG	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	400, 518, 566
Kzo9I	GATC	1 cut(s)	287
LmnI	GCTCC	2 cut(s)	186, 355
Lsp1109I	GCAGC	2 cut(s)	72, 517
LweI	GCATC	2 cut(s)	70, 517
MabI	ACCWGGT	1 cut(s)	301
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	289
MboI	GATC	1 cut(s)	287
MboII	GAAGA	2 cut(s)	145, 667
MhlI	GDGCHC	1 cut(s)	252
MlsI	TGGCCA	1 cut(s)	147
MluCI	AATT	5 cut(s)	88, 241, 454, 502, 574
MluNI	TGGCCA	1 cut(s)	147
MnlI	CCTC	8 cut(s)	119, 229, 236, 363, 395, 413, 570, 612
Mox20I	TGGCCA	1 cut(s)	147
MscI	TGGCCA	1 cut(s)	147
MseI	TTAA	2 cut(s)	309, 500
Msp20I	TGGCCA	1 cut(s)	147
MspR9I	CCNGG	2 cut(s)	303, 585
Mva1269I	GAATGC	2 cut(s)	101, 212
MvaI	CCWGG	2 cut(s)	303, 585
MvnI	CGCG	1 cut(s)	382
MwoI	GCNNNNNNNGC	4 cut(s)	105, 165, 216, 434
NdeII	GATC	1 cut(s)	287
NlaIII	CATG	3 cut(s)	400, 518, 566
NlaIV	GGNNCC	2 cut(s)	182, 249
NmuCI	GTSAC	1 cut(s)	133
PctI	GAATGC	2 cut(s)	101, 212
PfeI	GAWTC	2 cut(s)	20, 393
PkrI	GCNGC	4 cut(s)	62, 472, 532, 590
PshBI	ATTAAT	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	301, 583
PspGI	CCWGG	2 cut(s)	301, 583
PspN4I	GGNNCC	2 cut(s)	182, 249
PspPI	GGNCC	2 cut(s)	44, 118
RsaI	GTAC	1 cut(s)	687
RsaNI	GTAC	1 cut(s)	686
SaqAI	TTAA	2 cut(s)	309, 500
SatI	GCNGC	4 cut(s)	61, 471, 531, 589
Sau3AI	GATC	1 cut(s)	287
Sau96I	GGNCC	2 cut(s)	44, 118
ScrFI	CCNGG	2 cut(s)	303, 585
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	8 cut(s)	304, 343, 352, 424, 449, 464, 513, 631
SexAI	ACCWGGT	1 cut(s)	301
SfaNI	GCATC	2 cut(s)	70, 517
SfcI	CTRYAG	1 cut(s)	624
Sse9I	AATT	5 cut(s)	88, 241, 454, 502, 574
SsiI	CCGC	3 cut(s)	380, 470, 588
StyD4I	CCNGG	2 cut(s)	301, 583
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	2 cut(s)	77, 323
TaqI	TCGA	2 cut(s)	111, 290
TasI	AATT	5 cut(s)	88, 241, 454, 502, 574
TatI	WGTACW	1 cut(s)	685
TauI	GCSGC	2 cut(s)	473, 591
TfiI	GAWTC	2 cut(s)	20, 393
Tru1I	TTAA	2 cut(s)	309, 500
Tru9I	TTAA	2 cut(s)	309, 500
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	2 cut(s)	60, 530
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	385, 567
TspRI	CASTG	1 cut(s)	82
VspI	ATTAAT	1 cut(s)	309
XagI	CCTNNNNNAGG	1 cut(s)	230
XapI	RAATTY	4 cut(s)	241, 454, 502, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.