Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012826

Physical Location & Seq

Genomic Coordinates Reverse (-)

61243184 .. 61245163

Gene Structure 1980 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26976

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCAAGTGGTTTTGGGGATTCAGCGAGCAGGCCATCCCAATCACAAGGGCCTTCTTTCTCCAGCAGTAACGCTAATAACGGGGATGCTGGTAATTTCGAATGCAATATCTGCTTTGACTTAGCCCAAGACCCAATTGTTACCCTATGCGGCCATCTTTTCTGCTGGCCGTGCCTTTACAAATGGCTCCACATTCACTCCCATTCTCAGGAATGCCCTGTTTGCAAAGCCGTCGTGAAGGAGGAGAGTTTGGTCCCCTTGTATGGTAGGGGAAAGACATCTACTGACCCAAGATCAAGGTCAATTCCTGGAGTTAATATTCCAAATCGTCCAGCGGGGCAAAGGCCTGAAACAGCTCCTCCACCAGAACAAAACCATTTCGCCCAACGTGGGTTTGGATTCATGGGAGGTTTGGGAGGGTTTGCTCCACCAATTGCAACCACAACAAGATACTCTGCTGCATTTATTTCTCTGTCTCACACACACGCACACAGAGCCTGCTCTTTTCTGCAACATCGCTCATGGCATCAGCTCTCTCCACACAATGCAGTAGTGCGGAGGCATGGAATATGTTGCAGCAGGGTGTGGTTATTATGCCTATATAAGGGGAATAGAGCACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006928 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016477 GO:0016567 GO:0016740 GO:0018996 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030054 GO:0030154 GO:0030163 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040011 GO:0040039 GO:0042175 GO:0042221 GO:0042303 GO:0042692 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043292 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044449 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0048870 GO:0050896 GO:0051146 GO:0051179 GO:0051603 GO:0051674 GO:0051716 GO:0051788 GO:0055001 GO:0055002 GO:0055120 GO:0061061 GO:0061630 GO:0061659 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0099080 GO:0099081 GO:0099512 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3

Protein Analysis

207

Amino Acids

22.65

Weight (kDa)

9.08

Isoelectric Point (pI)

67.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_2	PF13923	34 - 75	6.9e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	34 - 76	1.9e-08	Ring finger domain
zf-RING_5	PF14634	34 - 76	1.1e-07	zinc-RING finger domain
zf-C3HC4_3	PF13920	34 - 80	7e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	35 - 75	5.4e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	35 - 73	1.9e-08	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19310
fragaria_vesca	FvH4_2g40351 FvH4_2g40351 FvH4_2g40351
malus_domestica	MD08G1036700.v1.1
prunus_persica	Prupe.1G384000_v2.0.a1
pyrus_communis	pycom08g02930 pycom15g02870
rosa_chinensis	RchiOBHm_Chr6g0300391
rosa_laevigata	RLG00000011342
rosa_multiflora	Rmu_sc0001670.1_g000013
rosa_roxburghii	Rroxscaffold_7G00167840
rosa_rugosa	Rorug06G0295600
rosa_samantha	Rh6AG408300 Rh6BG415600 Rh6CG423000 Rh6DG408600
rosa_wichuraiana	Rw6G035710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	150, 335, 556
AcoI	YGGCCR	2 cut(s)	151, 167
AfiI	CCNNNNNNNGG	4 cut(s)	208, 263, 390, 604
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	2 cut(s)	356, 532
AluI	AGCT	2 cut(s)	356, 532
Alw21I	GWGCWC	1 cut(s)	619
Alw26I	GTCTC	1 cut(s)	480
AlwNI	CAGNNNCTG	1 cut(s)	498
AoxI	GGCC	5 cut(s)	32, 50, 151, 167, 344
ApeKI	GCWGC	2 cut(s)	458, 576
AspS9I	GGNCC	2 cut(s)	50, 253
AsuII	TTCGAA	1 cut(s)	99
AvaII	GGWCC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	619
BbvI	GCAGC	2 cut(s)	445, 588
BccI	CCATC	2 cut(s)	43, 162
BceAI	ACGGC	2 cut(s)	154, 215
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BciT130I	CCWGG	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	480
BisI	GCNGC	3 cut(s)	151, 459, 577
BlsI	GCNGC	3 cut(s)	152, 460, 578
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	2 cut(s)	50, 253
BmiI	GGNNCC	2 cut(s)	188, 255
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	2 cut(s)	76, 535
BpmI	CTGGAG	2 cut(s)	46, 330
Bpu14I	TTCGAA	1 cut(s)	99
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 343, 373
Bsc4I	CCNNNNNNNGG	4 cut(s)	208, 263, 390, 604
BseBI	CCWGG	1 cut(s)	309
BseGI	GGATG	2 cut(s)	35, 91
BseLI	CCNNNNNNNGG	4 cut(s)	208, 263, 390, 604
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	2 cut(s)	257, 348
BseXI	GCAGC	2 cut(s)	445, 588
BshFI	GGCC	5 cut(s)	34, 52, 153, 169, 346
BsiHKAI	GWGCWC	1 cut(s)	619
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	4 cut(s)	208, 263, 390, 604
BsmAI	GTCTC	1 cut(s)	480
BsmFI	GGGAC	1 cut(s)	239
BsmI	GAATGC	2 cut(s)	107, 218
BsnI	GGCC	5 cut(s)	34, 52, 153, 169, 346
Bsp119I	TTCGAA	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp143I	GATC	1 cut(s)	293
BspACI	CCGC	3 cut(s)	150, 335, 556
BspANI	GGCC	5 cut(s)	34, 52, 153, 169, 346
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	188, 255
BspT104I	TTCGAA	1 cut(s)	99
BssMI	GATC	1 cut(s)	293
Bst2UI	CCWGG	1 cut(s)	309
BstAPI	GCANNNNNTGC	1 cut(s)	111
BstBI	TTCGAA	1 cut(s)	99
BstC8I	GCNNGC	4 cut(s)	28, 32, 167, 499
BstDEI	CTNAG	2 cut(s)	121, 207
BstENI	CCTNNNNNAGG	1 cut(s)	602
BstF5I	GGATG	2 cut(s)	35, 91
BstKTI	GATC	1 cut(s)	296
BstMAI	GTCTC	1 cut(s)	480
BstMBI	GATC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 171, 222, 494
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	445, 588
BsuRI	GGCC	5 cut(s)	34, 52, 153, 169, 346
BtgZI	GCGATG	1 cut(s)	500
BtsCI	GGATG	2 cut(s)	35, 91
Cac8I	GCNNGC	4 cut(s)	28, 32, 167, 499
CaiI	CAGNNNCTG	1 cut(s)	498
Cfr13I	GGNCC	2 cut(s)	50, 253
CviAII	CATG	3 cut(s)	403, 522, 563
DdeI	CTNAG	2 cut(s)	121, 207
DpnI	GATC	1 cut(s)	295
DpnII	GATC	1 cut(s)	293
EaeI	YGGCCR	2 cut(s)	151, 167
Eco147I	AGGCCT	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	253
EcoNI	CCTNNNNNAGG	1 cut(s)	602
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	307
FaeI	CATG	3 cut(s)	406, 525, 566
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	3 cut(s)	402, 521, 562
FauI	CCCGC	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	151, 459, 577
FokI	GGATG	2 cut(s)	22, 98
Fsp4HI	GCNGC	3 cut(s)	151, 459, 577
GluI	GCNGC	3 cut(s)	151, 459, 577
GsuI	CTGGAG	2 cut(s)	46, 330
HaeIII	GGCC	5 cut(s)	34, 52, 153, 169, 346
Hin1II	CATG	3 cut(s)	406, 525, 566
HinfI	GANTC	2 cut(s)	20, 399
Hpy188III	TCNNGA	2 cut(s)	209, 235
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	63, 232
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	7 cut(s)	105, 225, 437, 461, 511, 548, 576
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 171, 222, 494
HpyF3I	CTNAG	2 cut(s)	121, 207
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	3 cut(s)	406, 525, 566
Kzo9I	GATC	1 cut(s)	293
LmnI	GCTCC	3 cut(s)	192, 361, 430
Lsp1109I	GCAGC	2 cut(s)	445, 588
LweI	GCATC	2 cut(s)	76, 535
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	2 cut(s)	68, 139
MalI	GATC	1 cut(s)	295
MboI	GATC	1 cut(s)	293
MfeI	CAATTG	2 cut(s)	135, 432
MhlI	GDGCHC	1 cut(s)	619
MluCI	AATT	4 cut(s)	94, 135, 303, 432
MnlI	CCTC	5 cut(s)	235, 369, 401, 410, 552
MseI	TTAA	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	309
MunI	CAATTG	2 cut(s)	135, 432
Mva1269I	GAATGC	2 cut(s)	107, 218
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	4 cut(s)	111, 171, 222, 494
NdeII	GATC	1 cut(s)	293
NlaIII	CATG	3 cut(s)	406, 525, 566
NlaIV	GGNNCC	2 cut(s)	188, 255
NspV	TTCGAA	1 cut(s)	99
PceI	AGGCCT	1 cut(s)	346
PctI	GAATGC	2 cut(s)	107, 218
PfeI	GAWTC	2 cut(s)	20, 399
PfoI	TCCNGGA	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	152, 460, 578
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	188, 255
PspPI	GGNCC	2 cut(s)	50, 253
PstNI	CAGNNNCTG	1 cut(s)	498
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	3 cut(s)	151, 459, 577
Sau3AI	GATC	1 cut(s)	293
Sau96I	GGNCC	2 cut(s)	50, 253
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	619
SetI	ASST	5 cut(s)	302, 358, 391, 412, 534
SfaNI	GCATC	2 cut(s)	76, 535
SfuI	TTCGAA	1 cut(s)	99
SinI	GGWCC	1 cut(s)	253
Sse9I	AATT	4 cut(s)	94, 135, 303, 432
SseBI	AGGCCT	1 cut(s)	346
SsiI	CCGC	3 cut(s)	150, 335, 556
SspI	AATATT	1 cut(s)	319
StuI	AGGCCT	1 cut(s)	346
StyD4I	CCNGG	1 cut(s)	307
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	1 cut(s)	99
TasI	AATT	4 cut(s)	94, 135, 303, 432
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	20, 399
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TseI	GCWGC	2 cut(s)	458, 576
TspDTI	ATGAA	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	253
XagI	CCTNNNNNAGG	1 cut(s)	602
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.