Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012856

Physical Location & Seq

Genomic Coordinates Forward (+)

6774683 .. 6777568

Gene Structure 2886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G19580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGGAACCCTAGGCAGAGCATTTTACTCGGTCGGTTTTTGGATCCGTGAGACTGGTCAAGCTCTTGATCGCCTCGGTTGTCGCCTTCAAGGCAAAAATTACTTCCGAGAACAACTGTCAAGGCATCGGACACTGATGAATGTATTTGATAAGGCTCCGATTGTGGACAAGGAAGCTTTTGTGGCACCAAGCGCCTCAGTTATTGGGGACGTTCACATTGGAAGAGGATCGTCCATTTGGTATGGATGCGTATTACGAGGCGATGTGAACACCGTAAGTGTTGGGTCAGGAACTAATATTCAGGACAACTCACTTGTGCATGTGGCAAAATCAAACTTAAGCGGGAAGGTGCACCCAACCATAATTGGAGACAATGTAACCATTGGTCATAGTGCTGTTTTACATGGATGTACTGTTGAGGATGAGACCTTTATTGGGATGGGTGCGACACTTCTTGATGGGGTCGTTGTTGAAAAGCATGGGATGGTTGCTGCTGGTGCACTTGTACGACAAAACACCAGAATTCCTTCTGGAGAGGTATGGGGAGGAAACCCAGCAAGGTTCCTCAGGAAGCTCACTGATGAGGAAATTGCTTTTATCTCTCAGTCAGCAACAAACTACTCAAACCTCGCACAGGCTCACGCTGCAGAGAATGCAAAGCCATTAAATGTGATTGAGTTCGAGAAGGTTCTACGCAAGAAGCATGCTCTAAAGGACGAGGAGTATGACTCAATGCTCGGAATAGTGAGAGAAACTCCACCAGAGCTTAACCTCCCTAACAACATACTGCCTGATAAAGAAACCAAGCGTCCTTCTAATGTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0016043 GO:0016829 GO:0016835 GO:0016836 GO:0019866 GO:0022607 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0051259 GO:0051260 GO:0065003 GO:0070206 GO:0070207 GO:0070469 GO:0071840 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

275

Amino Acids

29.97

Weight (kDa)

7.13

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LbH_EIF2B	PF25084	91 - 176	1.5e-06	EIF2B subunit epsilon LbH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19580 AT1G19580
fragaria_vesca	FvH4_1g12950
malus_domestica	MD02G1144100.v1.1 MD15G1257700.v1.1
prunus_persica	Prupe.7G157500_v2.0.a1 Prupe.7G157500_v2.0.a1
pyrus_communis	pycom02g11400 pycom15g22540
rosa_chinensis	RchiOBHm_Chr2g0101001
rosa_laevigata	RLG00000017035
rosa_multiflora	Rmu_sc0001862.1_g000005 Rmu_sc0007698.1_g000022 Rmu_sc0027174.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141660
rosa_rugosa	Rorug02G0095100
rosa_samantha	Rh2CG148600
rosa_wichuraiana	Rw2G011160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	184
AciI	CCGC	1 cut(s)	342
AclWI	GGATC	3 cut(s)	37, 50, 235
AcsI	RAATTY	1 cut(s)	522
AfaI	GTAC	2 cut(s)	412, 507
AfiI	CCNNNNNNNGG	2 cut(s)	435, 634
AflII	CTTAAG	1 cut(s)	337
AgsI	TTSAA	2 cut(s)	89, 473
AluBI	AGCT	4 cut(s)	62, 176, 574, 766
AluI	AGCT	4 cut(s)	62, 176, 574, 766
Alw21I	GWGCWC	2 cut(s)	354, 502
Alw26I	GTCTC	3 cut(s)	44, 363, 419
Alw44I	GTGCAC	2 cut(s)	350, 498
AlwI	GGATC	3 cut(s)	37, 50, 235
ApaLI	GTGCAC	2 cut(s)	350, 498
ApeKI	GCWGC	2 cut(s)	491, 644
ApoI	RAATTY	1 cut(s)	522
Asp700I	GAANNNNTTC	1 cut(s)	526
AspA2I	CCTAGG	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	194
AvrII	CCTAGG	1 cut(s)	10
AxyI	CCTNAGG	1 cut(s)	566
BaeGI	GKGCMC	2 cut(s)	354, 502
BamHI	GGATCC	1 cut(s)	42
BanI	GGYRCC	1 cut(s)	184
Bbv12I	GWGCWC	2 cut(s)	354, 502
BbvI	GCAGC	2 cut(s)	478, 631
BccI	CCATC	3 cut(s)	433, 452, 478
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BcoDI	GTCTC	3 cut(s)	44, 363, 419
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	645
BfoI	RGCGCY	1 cut(s)	195
BfrI	CTTAAG	1 cut(s)	337
BglI	GCCNNNNNGGC	1 cut(s)	90
BisI	GCNGC	2 cut(s)	492, 645
BlnI	CCTAGG	1 cut(s)	10
BlsI	GCNGC	2 cut(s)	493, 646
BmiI	GGNNCC	5 cut(s)	7, 44, 156, 186, 563
BmsI	GCATC	2 cut(s)	133, 236
BplI	GAGNNNNNCTC	4 cut(s)	713, 745, 739, 771
BpmI	CTGGAG	1 cut(s)	552
BsaI	GGTCTC	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	10, 73
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	2 cut(s)	435, 634
Bse1I	ACTGG	1 cut(s)	58
Bse21I	CCTNAGG	1 cut(s)	566
BseDI	CCNNGG	2 cut(s)	10, 73
BseGI	GGATG	5 cut(s)	251, 413, 427, 444, 489
BseLI	CCNNNNNNNGG	2 cut(s)	435, 634
BseMII	CTCAG	3 cut(s)	210, 580, 617
BseNI	ACTGG	1 cut(s)	58
BseRI	GAGGAG	1 cut(s)	734
BseSI	GKGCMC	2 cut(s)	354, 502
BseXI	GCAGC	2 cut(s)	478, 631
BseYI	CCCAGC	1 cut(s)	553
Bsh1285I	CGRYCG	1 cut(s)	33
BshNI	GGYRCC	1 cut(s)	184
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	2 cut(s)	354, 502
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	435, 634
BsmAI	GTCTC	3 cut(s)	44, 363, 419
BsmFI	GGGAC	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	658
Bso31I	GGTCTC	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	354, 502
Bsp143I	GATC	3 cut(s)	42, 67, 227
BspACI	CCGC	1 cut(s)	342
BspCNI	CTCAG	3 cut(s)	209, 579, 616
BspLI	GGNNCC	5 cut(s)	7, 44, 156, 186, 563
BspMAI	CTGCAG	1 cut(s)	649
BspPI	GGATC	3 cut(s)	37, 50, 235
BspT107I	GGYRCC	1 cut(s)	184
BspTI	CTTAAG	1 cut(s)	337
BspTNI	GGTCTC	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	10, 73
BssMI	GATC	3 cut(s)	42, 67, 227
BssT1I	CCWWGG	1 cut(s)	10
Bst4CI	ACNGT	3 cut(s)	117, 274, 415
Bst6I	CTCTTC	1 cut(s)	217
BstAFI	CTTAAG	1 cut(s)	337
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstC8I	GCNNGC	1 cut(s)	705
BstDEI	CTNAG	3 cut(s)	196, 566, 603
BstENI	CCTNNNNNAGG	1 cut(s)	632
BstF5I	GGATG	5 cut(s)	251, 413, 427, 444, 489
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	3 cut(s)	45, 70, 230
BstMAI	GTCTC	3 cut(s)	44, 363, 419
BstMBI	GATC	3 cut(s)	42, 67, 227
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	6 cut(s)	90, 182, 191, 497, 644, 653
BstNSI	RCATGY	2 cut(s)	323, 707
BstSFI	CTRYAG	1 cut(s)	645
BstSLI	GKGCMC	2 cut(s)	354, 502
BstV1I	GCAGC	2 cut(s)	478, 631
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
Bsu36I	CCTNAGG	1 cut(s)	566
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	5 cut(s)	251, 413, 427, 444, 489
BtsIMutI	CAGTG	2 cut(s)	131, 576
Cac8I	GCNNGC	1 cut(s)	705
CfoI	GCGC	1 cut(s)	194
CseI	GACGC	1 cut(s)	797
Csp6I	GTAC	2 cut(s)	411, 506
CviAII	CATG	4 cut(s)	320, 404, 479, 704
CviJI	RGCY	7 cut(s)	62, 155, 176, 574, 638, 661, 766
CviKI_1	RGCY	7 cut(s)	62, 155, 176, 574, 638, 661, 766
CviQI	GTAC	2 cut(s)	411, 506
DdeI	CTNAG	3 cut(s)	196, 566, 603
DpnI	GATC	3 cut(s)	44, 69, 229
DpnII	GATC	3 cut(s)	42, 67, 227
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	419
Eco81I	CCTNAGG	1 cut(s)	566
EcoNI	CCTNNNNNAGG	1 cut(s)	632
EcoRI	GAATTC	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	4 cut(s)	323, 407, 482, 707
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	4 cut(s)	319, 403, 478, 703
FauI	CCCGC	1 cut(s)	335
Fnu4HI	GCNGC	2 cut(s)	492, 645
FokI	GGATG	5 cut(s)	258, 420, 434, 451, 496
Fsp4HI	GCNGC	2 cut(s)	492, 645
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	2 cut(s)	492, 645
GsaI	CCCAGC	1 cut(s)	557
GsuI	CTGGAG	1 cut(s)	552
HaeII	RGCGCY	1 cut(s)	195
HgaI	GACGC	1 cut(s)	797
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	4 cut(s)	323, 407, 482, 707
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	1 cut(s)	728
Hpy166II	GTNNAC	6 cut(s)	166, 214, 268, 352, 500, 823
Hpy188I	TCNGA	4 cut(s)	107, 129, 159, 740
Hpy188III	TCNNGA	7 cut(s)	65, 288, 302, 455, 531, 568, 682
Hpy8I	GTNNAC	6 cut(s)	166, 214, 268, 352, 500, 823
HpyAV	CCTTC	5 cut(s)	95, 340, 537, 679, 822
HpyCH4III	ACNGT	3 cut(s)	117, 274, 415
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	5 cut(s)	319, 352, 500, 647, 656
HpyF10VI	GCNNNNNNNGC	6 cut(s)	90, 182, 191, 497, 644, 653
HpyF3I	CTNAG	3 cut(s)	196, 566, 603
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	4 cut(s)	323, 407, 482, 707
HspAI	GCGC	1 cut(s)	192
Kzo9I	GATC	3 cut(s)	42, 67, 227
LmnI	GCTCC	1 cut(s)	160
Lsp1109I	GCAGC	2 cut(s)	478, 631
LweI	GCATC	2 cut(s)	133, 236
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	3 cut(s)	44, 69, 229
MboI	GATC	3 cut(s)	42, 67, 227
MboII	GAAGA	1 cut(s)	234
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	2 cut(s)	354, 502
MluCI	AATT	4 cut(s)	97, 363, 522, 588
MlyI	GAGTC	1 cut(s)	722
MroXI	GAANNNNTTC	1 cut(s)	526
MseI	TTAA	3 cut(s)	338, 665, 768
MspCI	CTTAAG	1 cut(s)	337
Mva1269I	GAATGC	1 cut(s)	658
MwoI	GCNNNNNNNGC	6 cut(s)	90, 182, 191, 497, 644, 653
NdeII	GATC	3 cut(s)	42, 67, 227
NlaIII	CATG	4 cut(s)	323, 407, 482, 707
NlaIV	GGNNCC	5 cut(s)	7, 44, 156, 186, 563
NspI	RCATGY	2 cut(s)	323, 707
PaeI	GCATGC	1 cut(s)	707
PctI	GAATGC	1 cut(s)	658
PdmI	GAANNNNTTC	1 cut(s)	526
PkrI	GCNGC	2 cut(s)	493, 646
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
PspFI	CCCAGC	1 cut(s)	553
PspN4I	GGNNCC	5 cut(s)	7, 44, 156, 186, 563
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	2 cut(s)	412, 507
RsaNI	GTAC	2 cut(s)	411, 506
SaqAI	TTAA	3 cut(s)	338, 665, 768
SatI	GCNGC	2 cut(s)	492, 645
Sau3AI	GATC	3 cut(s)	42, 67, 227
SchI	GAGTC	1 cut(s)	722
SduI	GDGCHC	2 cut(s)	354, 502
SfaNI	GCATC	2 cut(s)	133, 236
SfcI	CTRYAG	1 cut(s)	645
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
SphI	GCATGC	1 cut(s)	707
Sse9I	AATT	4 cut(s)	97, 363, 522, 588
SsiI	CCGC	1 cut(s)	342
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	3 cut(s)	117, 274, 415
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	1 cut(s)	681
TaqII	GACCGA	1 cut(s)	19
TasI	AATT	4 cut(s)	97, 363, 522, 588
TatI	WGTACW	1 cut(s)	410
Tru1I	TTAA	3 cut(s)	338, 665, 768
Tru9I	TTAA	3 cut(s)	338, 665, 768
TscAI	CASTG	2 cut(s)	138, 583
TseI	GCWGC	2 cut(s)	491, 644
TspDTI	ATGAA	1 cut(s)	152
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	2 cut(s)	138, 583
Vha464I	CTTAAG	1 cut(s)	337
VneI	GTGCAC	2 cut(s)	350, 498
XagI	CCTNNNNNAGG	1 cut(s)	632
XapI	RAATTY	1 cut(s)	522
XceI	RCATGY	2 cut(s)	323, 707
XmaJI	CCTAGG	1 cut(s)	10
XmnI	GAANNNNTTC	1 cut(s)	526
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.