Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012856

Physical Location & Seq

Genomic Coordinates Reverse (-)

12774807 .. 12776808

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47562

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGGGACTCTGGGACGAGCAATCTACACCGTCGGATTCTGGATCCGCGAGACCGGCCAGGCCATCGATCGCCTCGGCTCCCGCCTCCAGGGCAACTACTACTTCAAGGAGCAGCTGTCGCGGCACCGGACGCTGATGAATGTGTTCGATAAAGCTCCGGCGGTTGATAGGGAGGCGTTCGTCGCGCCGAGCGCGTCGATTATAGGGCAGGTTGAGGTTGGGAAAGGCTCGTCCATTTGGTACGGTTGCGTTTTGAGAGGTGATGCTAATAGTATCAGCATTGGGTGTGGCACCAACATACAAGACAATTCGCTTGTTCATGTGGCCAAGTCGAACTTGGCTGGGAAGGTTTTGCCTACTATAATTGGAGATAATGTCACCGTAGGTCACAGTGCGGTCTTGCAAGGATGTACCGTGGAAGATGAGGCGTTTGTCGGTATGGCTGCAACTTTGCTTGATGGGGTTTATGTTGAGAAACATGCCATGGTTGCTGCTGGAGCTCTTGTAAGGCAAAATACAAGAGTCCCCTGTGGAGAGGTATGGGGAGGTAATCCGGCAAAGTTCCTTAGGAAGCTCACTGAAGATGAGATGGCCTTCATCTCCCAGTCAGCCTTAAATTATTCCAACTTGGCTCAGGTTCATGCAGCTGAAAATGCCAAAGAACTTGATGAGGTGGAGTTTAAGAAGGTGCTGCAGAAGAAGTTTGGACGCCGTGACGAGGAATATGACGCAATGCTCGAGGTTGTTCATCAAACACCACCGGAGGTTAGTCATCCCGTTAACGTAGTGCCACCACCTAAGGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0016020 GO:0016043 GO:0016829 GO:0016835 GO:0016836 GO:0019866 GO:0022607 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0050896 GO:0051259 GO:0051260 GO:0065003 GO:0070206 GO:0070207 GO:0070469 GO:0071840 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

269

Amino Acids

29.17

Weight (kDa)

6.18

Isoelectric Point (pI)

31.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LbH_EIF2B	PF25084	91 - 175	9e-06	EIF2B subunit epsilon LbH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19580 AT1G19580
fragaria_vesca	FvH4_1g12950
malus_domestica	MD02G1144100.v1.1 MD15G1257700.v1.1
prunus_persica	Prupe.7G157500_v2.0.a1 Prupe.7G157500_v2.0.a1
pyrus_communis	pycom02g11400 pycom15g22540
rosa_chinensis	RchiOBHm_Chr2g0101001
rosa_laevigata	RLG00000017035
rosa_multiflora	Rmu_sc0001862.1_g000005 Rmu_sc0007698.1_g000022 Rmu_sc0027174.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141660
rosa_rugosa	Rorug02G0095100
rosa_samantha	Rh2CG148600
rosa_wichuraiana	Rw2G011160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	199
AccB1I	GGYRCC	2 cut(s)	123, 290
AccII	CGCG	4 cut(s)	48, 121, 185, 194
AciI	CCGC	5 cut(s)	46, 82, 121, 161, 395
AclWI	GGATC	2 cut(s)	37, 50
AcoI	YGGCCR	2 cut(s)	55, 324
AcuI	CTGAAG	1 cut(s)	600
AcyI	GRCGYC	1 cut(s)	709
AfaI	GTAC	2 cut(s)	242, 412
AfiI	CCNNNNNNNGG	2 cut(s)	88, 718
AgsI	TTSAA	1 cut(s)	106
AjnI	CCWGG	2 cut(s)	57, 87
AluBI	AGCT	5 cut(s)	115, 155, 500, 574, 647
AluI	AGCT	5 cut(s)	115, 155, 500, 574, 647
Alw21I	GWGCWC	1 cut(s)	502
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	2 cut(s)	37, 50
Ama87I	CYCGRG	1 cut(s)	737
AoxI	GGCC	4 cut(s)	55, 60, 324, 591
ApeKI	GCWGC	6 cut(s)	112, 443, 491, 644, 691, 803
Asp700I	GAANNNNTTC	1 cut(s)	143
AspLEI	GCGC	2 cut(s)	187, 194
AsuHPI	GGTGA	2 cut(s)	272, 370
AvaI	CYCGRG	1 cut(s)	737
AxyI	CCTNAGG	2 cut(s)	566, 798
BalI	TGGCCA	1 cut(s)	326
BamHI	GGATCC	1 cut(s)	42
BanI	GGYRCC	2 cut(s)	123, 290
BanII	GRGCYC	1 cut(s)	502
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	6 cut(s)	124, 430, 478, 656, 678, 790
BccI	CCATC	3 cut(s)	71, 452, 583
BceAI	ACGGC	1 cut(s)	696
BciT130I	CCWGG	2 cut(s)	59, 89
BcoDI	GTCTC	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	692
BfuAI	ACCTGC	1 cut(s)	199
BglI	GCCNNNNNGGC	1 cut(s)	90
BisI	GCNGC	7 cut(s)	113, 122, 444, 492, 645, 692, 804
BlsI	GCNGC	7 cut(s)	114, 123, 445, 493, 646, 693, 805
Bme1390I	CCNGG	2 cut(s)	59, 89
BmeT110I	CYCGRG	1 cut(s)	737
BmiI	GGNNCC	4 cut(s)	44, 79, 125, 292
BmrFI	CCNGG	2 cut(s)	59, 89
BmrI	ACTGGG	1 cut(s)	598
BmsI	GCATC	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	598
BpmI	CTGGAG	2 cut(s)	71, 516
Bpu10I	CCTNAGC	1 cut(s)	633
Bsa29I	ATCGAT	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	709
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	4 cut(s)	73, 88, 414, 483
BsaWI	WCCGGW	2 cut(s)	126, 760
BsaXI	ACNNNNNCTCC	6 cut(s)	101, 131, 360, 390, 489, 519
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 718
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	604
Bse21I	CCTNAGG	2 cut(s)	566, 798
Bse3DI	GCAATG	1 cut(s)	738
BseBI	CCWGG	2 cut(s)	59, 89
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	4 cut(s)	73, 88, 414, 483
BseGI	GGATG	2 cut(s)	413, 772
BseLI	CCNNNNNNNGG	2 cut(s)	88, 718
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	1 cut(s)	647
BseNI	ACTGG	1 cut(s)	604
BseXI	GCAGC	6 cut(s)	124, 430, 478, 656, 678, 790
BseYI	CCCAGC	1 cut(s)	341
Bsh1236I	CGCG	4 cut(s)	48, 121, 185, 194
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	4 cut(s)	57, 62, 326, 593
BshNI	GGYRCC	2 cut(s)	123, 290
BshVI	ATCGAT	1 cut(s)	66
BsiEI	CGRYCG	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	502
BsiHKCI	CYCGRG	1 cut(s)	737
BsiSI	CCGG	5 cut(s)	54, 127, 158, 554, 761
BslFI	GGGAC	3 cut(s)	19, 27, 509
BslI	CCNNNNNNNGG	2 cut(s)	88, 718
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	3 cut(s)	19, 27, 509
BsnI	GGCC	4 cut(s)	57, 62, 326, 593
Bso31I	GGTCTC	1 cut(s)	44
BsoBI	CYCGRG	1 cut(s)	737
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	2 cut(s)	42, 67
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	5 cut(s)	46, 82, 121, 161, 395
BspANI	GGCC	4 cut(s)	57, 62, 326, 593
BspCNI	CTCAG	1 cut(s)	646
BspDI	ATCGAT	1 cut(s)	66
BspFNI	CGCG	4 cut(s)	48, 121, 185, 194
BspLI	GGNNCC	4 cut(s)	44, 79, 125, 292
BspMAI	CTGCAG	1 cut(s)	696
BspMI	ACCTGC	1 cut(s)	199
BspPI	GGATC	2 cut(s)	37, 50
BspT107I	GGYRCC	2 cut(s)	123, 290
BspTNI	GGTCTC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	738
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	604
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	4 cut(s)	73, 88, 414, 483
BssMI	GATC	2 cut(s)	42, 67
BssNI	GRCGYC	1 cut(s)	709
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	2 cut(s)	59, 89
Bst4CI	ACNGT	5 cut(s)	31, 245, 382, 392, 415
BstACI	GRCGYC	1 cut(s)	709
BstDEI	CTNAG	3 cut(s)	566, 633, 798
BstDSI	CCRYGG	2 cut(s)	414, 483
BstF5I	GGATG	2 cut(s)	413, 772
BstFNI	CGCG	4 cut(s)	48, 121, 185, 194
BstHHI	GCGC	2 cut(s)	187, 194
BstKTI	GATC	2 cut(s)	45, 70
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	42, 67
BstMCI	CGRYCG	1 cut(s)	70
BstNI	CCWGG	2 cut(s)	59, 89
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	2 cut(s)	57, 87
BstSFI	CTRYAG	1 cut(s)	692
BstUI	CGCG	4 cut(s)	48, 121, 185, 194
BstV1I	GCAGC	6 cut(s)	124, 430, 478, 656, 678, 790
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
Bsu15I	ATCGAT	1 cut(s)	66
Bsu36I	CCTNAGG	2 cut(s)	566, 798
BsuRI	GGCC	4 cut(s)	57, 62, 326, 593
BsuTUI	ATCGAT	1 cut(s)	66
BtgI	CCRYGG	2 cut(s)	414, 483
BtsCI	GGATG	2 cut(s)	413, 772
BtsIMutI	CAGTG	2 cut(s)	397, 576
BveI	ACCTGC	1 cut(s)	199
CfoI	GCGC	2 cut(s)	187, 194
Cfr10I	RCCGGY	1 cut(s)	53
ClaI	ATCGAT	1 cut(s)	66
CseI	GACGC	4 cut(s)	139, 183, 717, 737
Csp6I	GTAC	2 cut(s)	241, 411
CviAII	CATG	4 cut(s)	320, 479, 484, 641
CviQI	GTAC	2 cut(s)	241, 411
DdeI	CTNAG	3 cut(s)	566, 633, 798
DpnI	GATC	2 cut(s)	44, 69
DpnII	GATC	2 cut(s)	42, 67
EaeI	YGGCCR	2 cut(s)	55, 324
Ecl136II	GAGCTC	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	502
Eco31I	GGTCTC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	500
Eco57I	CTGAAG	1 cut(s)	600
Eco81I	CCTNAGG	2 cut(s)	566, 798
Eco88I	CYCGRG	1 cut(s)	737
EcoICRI	GAGCTC	1 cut(s)	500
EcoRII	CCWGG	2 cut(s)	57, 87
EcoT14I	CCWWGG	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	4 cut(s)	323, 482, 487, 644
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FaqI	GGGAC	3 cut(s)	19, 27, 509
FatI	CATG	4 cut(s)	319, 478, 483, 640
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	7 cut(s)	113, 122, 444, 492, 645, 692, 804
FokI	GGATG	2 cut(s)	420, 759
FriOI	GRGCYC	1 cut(s)	502
Fsp4HI	GCNGC	7 cut(s)	113, 122, 444, 492, 645, 692, 804
GlaI	GCGC	2 cut(s)	186, 193
GluI	GCNGC	7 cut(s)	113, 122, 444, 492, 645, 692, 804
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	2 cut(s)	71, 516
HaeIII	GGCC	4 cut(s)	57, 62, 326, 593
HapII	CCGG	5 cut(s)	54, 127, 158, 554, 761
HgaI	GACGC	4 cut(s)	139, 183, 717, 737
HhaI	GCGC	2 cut(s)	187, 194
Hin1I	GRCGYC	1 cut(s)	709
Hin1II	CATG	4 cut(s)	323, 482, 487, 644
Hin6I	GCGC	2 cut(s)	185, 192
HinP1I	GCGC	2 cut(s)	185, 192
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HinfI	GANTC	3 cut(s)	7, 36, 522
HpaI	GTTAAC	1 cut(s)	781
HpaII	CCGG	5 cut(s)	54, 127, 158, 554, 761
HphI	GGTGA	2 cut(s)	272, 370
Hpy166II	GTNNAC	1 cut(s)	781
Hpy188I	TCNGA	1 cut(s)	35
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	781
Hpy99I	CGWCG	3 cut(s)	35, 185, 199
HpyAV	CCTTC	3 cut(s)	340, 604, 679
HpyCH4III	ACNGT	5 cut(s)	31, 245, 382, 392, 415
HpyCH4IV	ACGT	1 cut(s)	783
HpyCH4V	TGCA	4 cut(s)	403, 446, 644, 694
HpyF3I	CTNAG	3 cut(s)	566, 633, 798
HpySE526I	ACGT	1 cut(s)	783
Hsp92I	GRCGYC	1 cut(s)	709
Hsp92II	CATG	4 cut(s)	323, 482, 487, 644
HspAI	GCGC	2 cut(s)	185, 192
KspAI	GTTAAC	1 cut(s)	781
Kzo9I	GATC	2 cut(s)	42, 67
LmnI	GCTCC	4 cut(s)	83, 109, 160, 497
Lsp1109I	GCAGC	6 cut(s)	124, 430, 478, 656, 678, 790
LweI	GCATC	1 cut(s)	253
MaeII	ACGT	1 cut(s)	783
MaeIII	GTNAC	3 cut(s)	376, 386, 713
MalI	GATC	2 cut(s)	44, 69
MboI	GATC	2 cut(s)	42, 67
MboII	GAAGA	3 cut(s)	431, 593, 709
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	502
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	3 cut(s)	307, 363, 616
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	1 cut(s)	531
MmeI	TCCRAC	2 cut(s)	13, 648
Mox20I	TGGCCA	1 cut(s)	326
MroXI	GAANNNNTTC	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	4 cut(s)	614, 681, 780, 808
Msp20I	TGGCCA	1 cut(s)	326
MspA1I	CMGCKG	2 cut(s)	115, 647
MspI	CCGG	5 cut(s)	54, 127, 158, 554, 761
MspR9I	CCNGG	2 cut(s)	59, 89
MvaI	CCWGG	2 cut(s)	59, 89
MvnI	CGCG	4 cut(s)	48, 121, 185, 194
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	2 cut(s)	42, 67
NlaIII	CATG	4 cut(s)	323, 482, 487, 644
NlaIV	GGNNCC	4 cut(s)	44, 79, 125, 292
NmeAIII	GCCGAG	2 cut(s)	54, 213
NmuCI	GTSAC	3 cut(s)	376, 386, 713
NspI	RCATGY	1 cut(s)	482
PaeR7I	CTCGAG	1 cut(s)	737
PcsI	WCGNNNNNNNCGW	1 cut(s)	735
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	36
PkrI	GCNGC	7 cut(s)	114, 123, 445, 493, 646, 693, 805
Ple19I	CGATCG	1 cut(s)	70
PleI	GAGTC	1 cut(s)	530
PpsI	GAGTC	1 cut(s)	530
Psp124BI	GAGCTC	1 cut(s)	502
Psp6I	CCWGG	2 cut(s)	57, 87
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	2 cut(s)	57, 87
PspN4I	GGNNCC	4 cut(s)	44, 79, 125, 292
PspXI	VCTCGAGB	1 cut(s)	737
PstI	CTGCAG	1 cut(s)	696
PsuI	RGATCY	1 cut(s)	42
PvuI	CGATCG	1 cut(s)	70
PvuII	CAGCTG	2 cut(s)	115, 647
RsaI	GTAC	2 cut(s)	242, 412
RsaNI	GTAC	2 cut(s)	241, 411
SacI	GAGCTC	1 cut(s)	502
SaqAI	TTAA	4 cut(s)	614, 681, 780, 808
SatI	GCNGC	7 cut(s)	113, 122, 444, 492, 645, 692, 804
Sau3AI	GATC	2 cut(s)	42, 67
SchI	GAGTC	1 cut(s)	531
ScrFI	CCNGG	2 cut(s)	59, 89
SduI	GDGCHC	1 cut(s)	502
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	692
Sfr274I	CTCGAG	1 cut(s)	737
SlaI	CTCGAG	1 cut(s)	737
SmlI	CTYRAG	1 cut(s)	737
SmoI	CTYRAG	1 cut(s)	737
Sse9I	AATT	3 cut(s)	307, 363, 616
SsiI	CCGC	5 cut(s)	46, 82, 121, 161, 395
SstI	GAGCTC	1 cut(s)	502
StyD4I	CCNGG	2 cut(s)	57, 87
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	5 cut(s)	31, 245, 382, 392, 415
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	5 cut(s)	66, 147, 197, 332, 738
TasI	AATT	3 cut(s)	307, 363, 616
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	4 cut(s)	614, 681, 780, 808
Tru9I	TTAA	4 cut(s)	614, 681, 780, 808
TscAI	CASTG	2 cut(s)	397, 583
TseFI	GTSAC	3 cut(s)	376, 386, 713
TseI	GCWGC	6 cut(s)	112, 443, 491, 644, 691, 803
Tsp45I	GTSAC	3 cut(s)	376, 386, 713
TspDTI	ATGAA	5 cut(s)	152, 308, 586, 629, 737
TspRI	CASTG	2 cut(s)	397, 583
XceI	RCATGY	1 cut(s)	482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XhoI	CTCGAG	1 cut(s)	737
XmnI	GAANNNNTTC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.