Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027174.1

Orthogroup ID

OG0012856

Physical Location & Seq

Genomic Coordinates Forward (+)

1481 .. 2396

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027174.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggggactctgggacgagcaatctacaccgtcggattctggatccgcgagaccggccaggccatcgatcgcctcggctcccgcctccagggcaactactacttcaaggagcagctgtcgcggcaccggacgctgatgaatgtgttcgataaagctccggcggttgatacggaggcgttcgtcgcgccgagcgcgtcgattatagggcaggttgaggttgggaaaggctcgtccatttggtacggttgcgttttgagaggtgatgctaatagtatcagcattgggtgtggcaccaacatacaagacaattcgcttgttcatgtagcaaagtcgaacttggctgggaaggttttgcctactataattggagataatgtcactgtaggtcacagtgcggtcttgcaaggatgtactgtggaagatgaggcgtttgtcggtatggctgcaactttgcttgatggggtttatgttgagaaacatgccatggttgctgctggagctcttgtaaggcaaaatacaaggatcccctgtggagaggtttgtcaatgtcacttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0016020 GO:0016043 GO:0016829 GO:0016835 GO:0016836 GO:0019866 GO:0022607 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0050896 GO:0051259 GO:0051260 GO:0065003 GO:0070206 GO:0070207 GO:0070469 GO:0071840 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

185

Amino Acids

19.73

Weight (kDa)

6.5

Isoelectric Point (pI)

21.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19580 AT1G19580
fragaria_vesca	FvH4_1g12950
malus_domestica	MD02G1144100.v1.1 MD15G1257700.v1.1
prunus_persica	Prupe.7G157500_v2.0.a1 Prupe.7G157500_v2.0.a1
pyrus_communis	pycom02g11400 pycom15g22540
rosa_chinensis	RchiOBHm_Chr2g0101001
rosa_laevigata	RLG00000017035
rosa_multiflora	Rmu_sc0001862.1_g000005 Rmu_sc0007698.1_g000022 Rmu_sc0027174.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141660
rosa_rugosa	Rorug02G0095100
rosa_samantha	Rh2CG148600
rosa_wichuraiana	Rw2G011160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	199
AccB1I	GGYRCC	2 cut(s)	123, 290
AccII	CGCG	4 cut(s)	48, 121, 185, 194
AciI	CCGC	5 cut(s)	46, 82, 121, 161, 395
AclWI	GGATC	4 cut(s)	37, 50, 517, 530
AcoI	YGGCCR	1 cut(s)	55
AfaI	GTAC	2 cut(s)	242, 412
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	106
AjnI	CCWGG	2 cut(s)	57, 87
AluBI	AGCT	3 cut(s)	115, 155, 500
AluI	AGCT	3 cut(s)	115, 155, 500
Alw21I	GWGCWC	1 cut(s)	502
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	4 cut(s)	37, 50, 517, 530
AoxI	GGCC	2 cut(s)	55, 60
ApeKI	GCWGC	3 cut(s)	112, 443, 491
Asp700I	GAANNNNTTC	1 cut(s)	143
AspLEI	GCGC	2 cut(s)	187, 194
AsuHPI	GGTGA	1 cut(s)	272
BamHI	GGATCC	2 cut(s)	42, 522
BanI	GGYRCC	2 cut(s)	123, 290
BanII	GRGCYC	1 cut(s)	502
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	3 cut(s)	124, 430, 478
BccI	CCATC	2 cut(s)	71, 452
BciT130I	CCWGG	2 cut(s)	59, 89
BcoDI	GTCTC	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	381
BfuAI	ACCTGC	1 cut(s)	199
BglI	GCCNNNNNGGC	1 cut(s)	90
BisI	GCNGC	4 cut(s)	113, 122, 444, 492
BlsI	GCNGC	4 cut(s)	114, 123, 445, 493
Bme1390I	CCNGG	2 cut(s)	59, 89
BmiI	GGNNCC	5 cut(s)	44, 79, 125, 292, 524
BmrFI	CCNGG	2 cut(s)	59, 89
BmsI	GCATC	1 cut(s)	253
BpmI	CTGGAG	2 cut(s)	71, 516
Bsa29I	ATCGAT	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	3 cut(s)	73, 88, 483
BsaWI	WCCGGW	1 cut(s)	126
BsaXI	ACNNNNNCTCC	6 cut(s)	101, 131, 360, 390, 489, 519
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse118I	RCCGGY	1 cut(s)	53
BseBI	CCWGG	2 cut(s)	59, 89
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	3 cut(s)	73, 88, 483
BseGI	GGATG	1 cut(s)	413
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseXI	GCAGC	3 cut(s)	124, 430, 478
BseYI	CCCAGC	1 cut(s)	341
Bsh1236I	CGCG	4 cut(s)	48, 121, 185, 194
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	2 cut(s)	57, 62
BshNI	GGYRCC	2 cut(s)	123, 290
BshVI	ATCGAT	1 cut(s)	66
BsiEI	CGRYCG	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	502
BsiSI	CCGG	3 cut(s)	54, 127, 158
BslFI	GGGAC	2 cut(s)	19, 27
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	2 cut(s)	19, 27
BsnI	GGCC	2 cut(s)	57, 62
Bso31I	GGTCTC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	3 cut(s)	42, 67, 522
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	5 cut(s)	46, 82, 121, 161, 395
BspANI	GGCC	2 cut(s)	57, 62
BspDI	ATCGAT	1 cut(s)	66
BspFNI	CGCG	4 cut(s)	48, 121, 185, 194
BspLI	GGNNCC	5 cut(s)	44, 79, 125, 292, 524
BspMI	ACCTGC	1 cut(s)	199
BspPI	GGATC	4 cut(s)	37, 50, 517, 530
BspT107I	GGYRCC	2 cut(s)	123, 290
BspTNI	GGTCTC	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	3 cut(s)	73, 88, 483
BssMI	GATC	3 cut(s)	42, 67, 522
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	2 cut(s)	59, 89
Bst4CI	ACNGT	5 cut(s)	31, 245, 382, 392, 415
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	413
BstFNI	CGCG	4 cut(s)	48, 121, 185, 194
BstHHI	GCGC	2 cut(s)	187, 194
BstKTI	GATC	3 cut(s)	45, 70, 525
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	3 cut(s)	42, 67, 522
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	9 cut(s)	54, 90, 118, 121, 130, 182, 191, 488, 497
BstNI	CCWGG	2 cut(s)	59, 89
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	2 cut(s)	57, 87
BstSFI	CTRYAG	1 cut(s)	381
BstUI	CGCG	4 cut(s)	48, 121, 185, 194
BstV1I	GCAGC	3 cut(s)	124, 430, 478
BstX2I	RGATCY	2 cut(s)	42, 522
BstYI	RGATCY	2 cut(s)	42, 522
Bsu15I	ATCGAT	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	57, 62
BsuTUI	ATCGAT	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	413
BtsIMutI	CAGTG	2 cut(s)	378, 397
BveI	ACCTGC	1 cut(s)	199
CfoI	GCGC	2 cut(s)	187, 194
Cfr10I	RCCGGY	1 cut(s)	53
ClaI	ATCGAT	1 cut(s)	66
CseI	GACGC	2 cut(s)	139, 183
Csp6I	GTAC	2 cut(s)	241, 411
CviAII	CATG	3 cut(s)	320, 479, 484
CviJI	RGCY	9 cut(s)	57, 62, 78, 115, 155, 228, 341, 443, 500
CviKI_1	RGCY	9 cut(s)	57, 62, 78, 115, 155, 228, 341, 443, 500
CviQI	GTAC	2 cut(s)	241, 411
DpnI	GATC	3 cut(s)	44, 69, 524
DpnII	GATC	3 cut(s)	42, 67, 522
EaeI	YGGCCR	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	502
Eco31I	GGTCTC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	500
EcoICRI	GAGCTC	1 cut(s)	500
EcoRII	CCWGG	2 cut(s)	57, 87
EcoT14I	CCWWGG	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	3 cut(s)	323, 482, 487
FaiI	YATR	8 cut(s)	203, 299, 321, 362, 440, 468, 480, 485
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FaqI	GGGAC	2 cut(s)	19, 27
FatI	CATG	3 cut(s)	319, 478, 483
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	4 cut(s)	113, 122, 444, 492
FokI	GGATG	1 cut(s)	420
FriOI	GRGCYC	1 cut(s)	502
Fsp4HI	GCNGC	4 cut(s)	113, 122, 444, 492
GlaI	GCGC	2 cut(s)	186, 193
GluI	GCNGC	4 cut(s)	113, 122, 444, 492
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	2 cut(s)	71, 516
HaeIII	GGCC	2 cut(s)	57, 62
HapII	CCGG	3 cut(s)	54, 127, 158
HgaI	GACGC	2 cut(s)	139, 183
HhaI	GCGC	2 cut(s)	187, 194
Hin1II	CATG	3 cut(s)	323, 482, 487
Hin6I	GCGC	2 cut(s)	185, 192
HinP1I	GCGC	2 cut(s)	185, 192
HinfI	GANTC	2 cut(s)	7, 36
HpaII	CCGG	3 cut(s)	54, 127, 158
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	35
Hpy188III	TCNNGA	1 cut(s)	40
Hpy99I	CGWCG	3 cut(s)	35, 185, 199
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	5 cut(s)	31, 245, 382, 392, 415
HpyCH4V	TGCA	2 cut(s)	403, 446
HpyF10VI	GCNNNNNNNGC	9 cut(s)	54, 90, 118, 121, 130, 182, 191, 488, 497
Hsp92II	CATG	3 cut(s)	323, 482, 487
HspAI	GCGC	2 cut(s)	185, 192
Kzo9I	GATC	3 cut(s)	42, 67, 522
LmnI	GCTCC	4 cut(s)	83, 109, 160, 497
Lsp1109I	GCAGC	3 cut(s)	124, 430, 478
LweI	GCATC	1 cut(s)	253
MaeIII	GTNAC	3 cut(s)	376, 386, 548
MalI	GATC	3 cut(s)	44, 69, 524
MboI	GATC	3 cut(s)	42, 67, 522
MboII	GAAGA	1 cut(s)	431
MflI	RGATCY	2 cut(s)	42, 522
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	2 cut(s)	307, 363
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	7 cut(s)	83, 95, 166, 208, 251, 418, 529
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	1 cut(s)	556
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	3 cut(s)	54, 127, 158
MspR9I	CCNGG	2 cut(s)	59, 89
MvaI	CCWGG	2 cut(s)	59, 89
MvnI	CGCG	4 cut(s)	48, 121, 185, 194
MwoI	GCNNNNNNNGC	9 cut(s)	54, 90, 118, 121, 130, 182, 191, 488, 497
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	3 cut(s)	42, 67, 522
NlaIII	CATG	3 cut(s)	323, 482, 487
NlaIV	GGNNCC	5 cut(s)	44, 79, 125, 292, 524
NmeAIII	GCCGAG	2 cut(s)	54, 213
NmuCI	GTSAC	3 cut(s)	376, 386, 548
NspI	RCATGY	1 cut(s)	482
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	36
PkrI	GCNGC	4 cut(s)	114, 123, 445, 493
Ple19I	CGATCG	1 cut(s)	70
Psp124BI	GAGCTC	1 cut(s)	502
Psp6I	CCWGG	2 cut(s)	57, 87
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	2 cut(s)	57, 87
PspN4I	GGNNCC	5 cut(s)	44, 79, 125, 292, 524
PsuI	RGATCY	2 cut(s)	42, 522
PvuI	CGATCG	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	115
RsaI	GTAC	2 cut(s)	242, 412
RsaNI	GTAC	2 cut(s)	241, 411
SacI	GAGCTC	1 cut(s)	502
SaqAI	TTAA	1 cut(s)	556
SatI	GCNGC	4 cut(s)	113, 122, 444, 492
Sau3AI	GATC	3 cut(s)	42, 67, 522
ScrFI	CCNGG	2 cut(s)	59, 89
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	9 cut(s)	117, 157, 213, 219, 262, 351, 388, 502, 540
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	381
Sse9I	AATT	2 cut(s)	307, 363
SsiI	CCGC	5 cut(s)	46, 82, 121, 161, 395
SstI	GAGCTC	1 cut(s)	502
StyD4I	CCNGG	2 cut(s)	57, 87
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	5 cut(s)	31, 245, 382, 392, 415
TaqI	TCGA	4 cut(s)	66, 147, 197, 332
TasI	AATT	2 cut(s)	307, 363
TatI	WGTACW	1 cut(s)	410
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	556
Tru9I	TTAA	1 cut(s)	556
TscAI	CASTG	2 cut(s)	385, 397
TseFI	GTSAC	3 cut(s)	376, 386, 548
TseI	GCWGC	3 cut(s)	112, 443, 491
Tsp45I	GTSAC	3 cut(s)	376, 386, 548
TspDTI	ATGAA	2 cut(s)	152, 308
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	2 cut(s)	385, 397
XceI	RCATGY	1 cut(s)	482
XmnI	GAANNNNTTC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.