Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012856

Physical Location & Seq

Genomic Coordinates Forward (+)

16558983 .. 16561217

Gene Structure 2235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G157500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGGACCCTGGGCAGAGCAATCTACACCGTCGGATTCTGGATCCGCGAGACCGGCCAGGCCATTGATCGCCTCGGTTCCCGACTCCAGGGCAATTACTACTTCCAAGAGCAGCTGTCTCGGCATCGGACGCTGATGAACGTGTTTGACAAAGCTCCGGTGGTTGATAAGGACGCGTTTGTGGCGCCCAGTGCGTCCATCGTAGGCCAAGTTCAGGTGGGACGAGGTTCCTCCATTTGGTACGGTTGTGTTTTGAGAGGTGATGTTAACAGCATCAGCATTGGGTCTGGGACCAACATACAAGATAATTCCCTTGTTCATGTAGCAAAGTCTAACTTGAGTGGCAAGGTTTTGCCCACTGTAATTGGAGATAATGTCACTGTAGGTCACAGTGCTGTCTTGCATGGATGTACTGTAGAGGATGAGGCATTTGTTGGCATGGCTGCAACCTTGCTTGATGGGGTTTATGTTGAGAAACATGCCATGGTTGCTGCTGGAGCCCTTGTAAGGCAGAATACAAGGATTCCCTGTGGAGAGGTATGGGGAGGGAATCCAGCAAAGTTCCTGAGGAAGCTGACAGAAGAAGAGATGGCCTTCATCTCCCAGTCAGCCATAAATTATTCCAACTTGGCTCAGGCTCATGCAGCTGAAAATGCAAAGAGCCTTGATGAGATAGAGTTTGAGAAGGTGCTGCGAAAGAAGTTTGCACGCCGTGATGAGGAATATGACTCTATGTTGGGTATTGTTCGTGAAACGCCAGCGGAGATTACTCTTCCTGACAACGTACTGCCAGGCAAAGTACCGAAGACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0016020 GO:0016043 GO:0016829 GO:0016835 GO:0016836 GO:0019866 GO:0022607 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0050896 GO:0051259 GO:0051260 GO:0065003 GO:0070206 GO:0070207 GO:0070469 GO:0071840 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

272

Amino Acids

29.41

Weight (kDa)

6.32

Isoelectric Point (pI)

31.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19580 AT1G19580
fragaria_vesca	FvH4_1g12950
malus_domestica	MD02G1144100.v1.1 MD15G1257700.v1.1
prunus_persica	Prupe.7G157500_v2.0.a1 Prupe.7G157500_v2.0.a1
pyrus_communis	pycom02g11400 pycom15g22540
rosa_chinensis	RchiOBHm_Chr2g0101001
rosa_laevigata	RLG00000017035
rosa_multiflora	Rmu_sc0001862.1_g000005 Rmu_sc0007698.1_g000022 Rmu_sc0027174.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141660
rosa_rugosa	Rorug02G0095100
rosa_samantha	Rh2CG148600
rosa_wichuraiana	Rw2G011160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	184
AccII	CGCG	2 cut(s)	48, 176
AciI	CCGC	2 cut(s)	46, 761
AclWI	GGATC	2 cut(s)	37, 50
AcoI	YGGCCR	1 cut(s)	55
AcyI	GRCGYC	1 cut(s)	185
AdeI	CACNNNGTG	1 cut(s)	713
AfaI	GTAC	4 cut(s)	242, 412, 786, 801
AfiI	CCNNNNNNNGG	5 cut(s)	88, 214, 237, 507, 718
AflIII	ACRYGT	2 cut(s)	141, 174
AjnI	CCWGG	4 cut(s)	9, 57, 87, 790
AluBI	AGCT	4 cut(s)	115, 155, 574, 647
AluI	AGCT	4 cut(s)	115, 155, 574, 647
Alw26I	GTCTC	2 cut(s)	44, 123
AlwI	GGATC	2 cut(s)	37, 50
AoxI	GGCC	4 cut(s)	55, 60, 205, 591
ApeKI	GCWGC	5 cut(s)	112, 443, 491, 644, 691
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	2 cut(s)	6, 291
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	6, 291
AxyI	CCTNAGG	1 cut(s)	566
BaeI	ACNNNNGTAYC	2 cut(s)	232, 265
BamHI	GGATCC	1 cut(s)	42
BanI	GGYRCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	812
BbvI	GCAGC	5 cut(s)	124, 430, 478, 656, 678
BccI	CCATC	3 cut(s)	206, 452, 583
BceAI	ACGGC	1 cut(s)	696
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	4 cut(s)	11, 59, 89, 792
BcoDI	GTCTC	2 cut(s)	44, 123
BfmI	CTRYAG	2 cut(s)	381, 414
BfoI	RGCGCY	1 cut(s)	188
BisI	GCNGC	5 cut(s)	113, 444, 492, 645, 692
BlsI	GCNGC	5 cut(s)	114, 445, 493, 646, 693
Bme1390I	CCNGG	4 cut(s)	11, 59, 89, 792
Bme18I	GGWCC	2 cut(s)	6, 291
BmgT120I	GGNCC	2 cut(s)	6, 291
BmiI	GGNNCC	8 cut(s)	7, 8, 44, 79, 186, 229, 292, 499
BmrFI	CCNGG	4 cut(s)	11, 59, 89, 792
BmrI	ACTGGG	2 cut(s)	183, 598
BmsI	GCATC	2 cut(s)	133, 282
BmuI	ACTGGG	2 cut(s)	183, 598
BpiI	GAAGAC	1 cut(s)	812
BpmI	CTGGAG	2 cut(s)	71, 516
Bpu10I	CCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	358
BsaHI	GRCGYC	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	5 cut(s)	9, 10, 73, 88, 483
BsaWI	WCCGGW	1 cut(s)	157
BsaXI	ACNNNNNCTCC	4 cut(s)	360, 390, 489, 519
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 214, 237, 507, 718
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	2 cut(s)	189, 604
Bse21I	CCTNAGG	1 cut(s)	566
BseBI	CCWGG	4 cut(s)	11, 59, 89, 792
BseDI	CCNNGG	5 cut(s)	9, 10, 73, 88, 483
BseGI	GGATG	2 cut(s)	413, 427
BseLI	CCNNNNNNNGG	5 cut(s)	88, 214, 237, 507, 718
BseMII	CTCAG	2 cut(s)	557, 647
BseNI	ACTGG	2 cut(s)	189, 604
BseXI	GCAGC	5 cut(s)	124, 430, 478, 656, 678
Bsh1236I	CGCG	2 cut(s)	48, 176
BshFI	GGCC	4 cut(s)	57, 62, 207, 593
BshNI	GGYRCC	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	54, 158
BslFI	GGGAC	3 cut(s)	19, 234, 304
BslI	CCNNNNNNNGG	5 cut(s)	88, 214, 237, 507, 718
BsmAI	GTCTC	2 cut(s)	44, 123
BsmFI	GGGAC	3 cut(s)	19, 234, 304
BsnI	GGCC	4 cut(s)	57, 62, 207, 593
Bso31I	GGTCTC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	2 cut(s)	42, 67
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	2 cut(s)	46, 761
BspANI	GGCC	4 cut(s)	57, 62, 207, 593
BspCNI	CTCAG	2 cut(s)	558, 646
BspFNI	CGCG	2 cut(s)	48, 176
BspLI	GGNNCC	8 cut(s)	7, 8, 44, 79, 186, 229, 292, 499
BspPI	GGATC	2 cut(s)	37, 50
BspT107I	GGYRCC	1 cut(s)	184
BspTNI	GGTCTC	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	189, 604
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	5 cut(s)	9, 10, 73, 88, 483
BssMI	GATC	2 cut(s)	42, 67
BssNI	GRCGYC	1 cut(s)	185
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	4 cut(s)	11, 59, 89, 792
Bst4CI	ACNGT	6 cut(s)	31, 245, 361, 382, 392, 415
Bst6I	CTCTTC	2 cut(s)	579, 777
BstACI	GRCGYC	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	709, 759
BstDEI	CTNAG	2 cut(s)	566, 633
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	2 cut(s)	413, 427
BstFNI	CGCG	2 cut(s)	48, 176
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	2 cut(s)	45, 70
BstMAI	GTCTC	2 cut(s)	44, 123
BstMBI	GATC	2 cut(s)	42, 67
BstMWI	GCNNNNNNNGC	9 cut(s)	54, 121, 130, 182, 191, 488, 497, 644, 653
BstNI	CCWGG	4 cut(s)	11, 59, 89, 792
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	4 cut(s)	9, 57, 87, 790
BstSFI	CTRYAG	2 cut(s)	381, 414
BstUI	CGCG	2 cut(s)	48, 176
BstV1I	GCAGC	5 cut(s)	124, 430, 478, 656, 678
BstV2I	GAAGAC	1 cut(s)	812
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
Bsu36I	CCTNAGG	1 cut(s)	566
BsuRI	GGCC	4 cut(s)	57, 62, 207, 593
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	413, 427
BtsIMutI	CAGTG	4 cut(s)	196, 357, 378, 397
Cac8I	GCNNGC	2 cut(s)	709, 759
CfoI	GCGC	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	6, 291
CseI	GACGC	3 cut(s)	139, 182, 183
Csp6I	GTAC	4 cut(s)	241, 411, 785, 800
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	6 cut(s)	320, 404, 439, 479, 484, 641
CviQI	GTAC	4 cut(s)	241, 411, 785, 800
DdeI	CTNAG	2 cut(s)	566, 633
DinI	GGCGCC	1 cut(s)	186
DpnI	GATC	2 cut(s)	44, 69
DpnII	GATC	2 cut(s)	42, 67
DraIII	CACNNNGTG	1 cut(s)	713
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	579, 777
EarI	CTCTTC	2 cut(s)	579, 777
Eco130I	CCWWGG	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	502
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	2 cut(s)	6, 291
Eco81I	CCTNAGG	1 cut(s)	566
EcoO109I	RGGNCCY	1 cut(s)	6
EcoRII	CCWGG	4 cut(s)	9, 57, 87, 790
EcoT14I	CCWWGG	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	502
EgeI	GGCGCC	1 cut(s)	186
EheI	GGCGCC	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	6 cut(s)	323, 407, 442, 482, 487, 644
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FaqI	GGGAC	3 cut(s)	19, 234, 304
FatI	CATG	6 cut(s)	319, 403, 438, 478, 483, 640
Fnu4HI	GCNGC	5 cut(s)	113, 444, 492, 645, 692
FokI	GGATG	2 cut(s)	420, 434
FriOI	GRGCYC	1 cut(s)	502
Fsp4HI	GCNGC	5 cut(s)	113, 444, 492, 645, 692
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	5 cut(s)	113, 444, 492, 645, 692
GsuI	CTGGAG	2 cut(s)	71, 516
HaeII	RGCGCY	1 cut(s)	188
HaeIII	GGCC	4 cut(s)	57, 62, 207, 593
HapII	CCGG	2 cut(s)	54, 158
HgaI	GACGC	3 cut(s)	139, 182, 183
HhaI	GCGC	1 cut(s)	187
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	6 cut(s)	323, 407, 442, 482, 487, 644
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	5 cut(s)	36, 84, 523, 550, 728
HpaI	GTTAAC	1 cut(s)	268
HpaII	CCGG	2 cut(s)	54, 158
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	35, 129
Hpy188III	TCNNGA	5 cut(s)	40, 81, 565, 749, 776
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	604, 679
HpyCH4III	ACNGT	6 cut(s)	31, 245, 361, 382, 392, 415
HpyCH4IV	ACGT	2 cut(s)	141, 783
HpyCH4V	TGCA	5 cut(s)	403, 446, 644, 656, 707
HpyF10VI	GCNNNNNNNGC	9 cut(s)	54, 121, 130, 182, 191, 488, 497, 644, 653
HpyF3I	CTNAG	2 cut(s)	566, 633
HpySE526I	ACGT	2 cut(s)	141, 783
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	6 cut(s)	323, 407, 442, 482, 487, 644
HspAI	GCGC	1 cut(s)	185
KasI	GGCGCC	1 cut(s)	184
KflI	GGGWCCC	1 cut(s)	6
KspAI	GTTAAC	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	42, 67
LmnI	GCTCC	2 cut(s)	160, 497
Lsp1109I	GCAGC	5 cut(s)	124, 430, 478, 656, 678
LweI	GCATC	2 cut(s)	133, 282
MaeII	ACGT	2 cut(s)	141, 783
MaeIII	GTNAC	2 cut(s)	376, 386
MalI	GATC	2 cut(s)	44, 69
MboI	GATC	2 cut(s)	42, 67
MboII	GAAGA	3 cut(s)	593, 596, 764
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	4 cut(s)	94, 307, 363, 616
MluI	ACGCGT	1 cut(s)	174
Mly113I	GGCGCC	1 cut(s)	185
MlyI	GAGTC	2 cut(s)	78, 722
MmeI	TCCRAC	2 cut(s)	13, 648
MseI	TTAA	2 cut(s)	267, 814
MspA1I	CMGCKG	3 cut(s)	115, 647, 761
MspI	CCGG	2 cut(s)	54, 158
MspR9I	CCNGG	4 cut(s)	11, 59, 89, 792
MvaI	CCWGG	4 cut(s)	11, 59, 89, 792
MvnI	CGCG	2 cut(s)	48, 176
MwoI	GCNNNNNNNGC	9 cut(s)	54, 121, 130, 182, 191, 488, 497, 644, 653
NarI	GGCGCC	1 cut(s)	185
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	2 cut(s)	42, 67
NlaIII	CATG	6 cut(s)	323, 407, 442, 482, 487, 644
NlaIV	GGNNCC	8 cut(s)	7, 8, 44, 79, 186, 229, 292, 499
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	2 cut(s)	376, 386
NspI	RCATGY	1 cut(s)	482
PasI	CCCWGGG	1 cut(s)	10
PfeI	GAWTC	3 cut(s)	36, 523, 550
PkrI	GCNGC	5 cut(s)	114, 445, 493, 646, 693
PleI	GAGTC	2 cut(s)	78, 722
PluTI	GGCGCC	1 cut(s)	188
PpsI	GAGTC	2 cut(s)	78, 722
PpuMI	RGGWCCY	1 cut(s)	6
Psp5II	RGGWCCY	1 cut(s)	6
Psp6I	CCWGG	4 cut(s)	9, 57, 87, 790
PspGI	CCWGG	4 cut(s)	9, 57, 87, 790
PspN4I	GGNNCC	8 cut(s)	7, 8, 44, 79, 186, 229, 292, 499
PspPI	GGNCC	2 cut(s)	6, 291
PspPPI	RGGWCCY	1 cut(s)	6
PsrI	GAACNNNNNNTAC	2 cut(s)	195, 227
PsuI	RGATCY	1 cut(s)	42
PvuII	CAGCTG	2 cut(s)	115, 647
RsaI	GTAC	4 cut(s)	242, 412, 786, 801
RsaNI	GTAC	4 cut(s)	241, 411, 785, 800
SaqAI	TTAA	2 cut(s)	267, 814
SatI	GCNGC	5 cut(s)	113, 444, 492, 645, 692
Sau3AI	GATC	2 cut(s)	42, 67
Sau96I	GGNCC	2 cut(s)	6, 291
SchI	GAGTC	2 cut(s)	78, 722
ScrFI	CCNGG	4 cut(s)	11, 59, 89, 792
SduI	GDGCHC	1 cut(s)	502
SfaNI	GCATC	2 cut(s)	133, 282
SfcI	CTRYAG	2 cut(s)	381, 414
SfoI	GGCGCC	1 cut(s)	186
SinI	GGWCC	2 cut(s)	6, 291
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	4 cut(s)	94, 307, 363, 616
SsiI	CCGC	2 cut(s)	46, 761
SspDI	GGCGCC	1 cut(s)	184
StyD4I	CCNGG	4 cut(s)	9, 57, 87, 790
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	6 cut(s)	31, 245, 361, 382, 392, 415
TaiI	ACGT	2 cut(s)	144, 786
TasI	AATT	4 cut(s)	94, 307, 363, 616
TatI	WGTACW	1 cut(s)	410
TfiI	GAWTC	3 cut(s)	36, 523, 550
Tru1I	TTAA	2 cut(s)	267, 814
Tru9I	TTAA	2 cut(s)	267, 814
TscAI	CASTG	4 cut(s)	196, 364, 385, 397
TseFI	GTSAC	2 cut(s)	376, 386
TseI	GCWGC	5 cut(s)	112, 443, 491, 644, 691
Tsp45I	GTSAC	2 cut(s)	376, 386
TspDTI	ATGAA	3 cut(s)	152, 308, 586
TspRI	CASTG	4 cut(s)	196, 364, 385, 397
VpaK11BI	GGWCC	2 cut(s)	6, 291
XceI	RCATGY	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.