Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012856

Physical Location & Seq

Genomic Coordinates Forward (+)

7790375 .. 7791657

Gene Structure 1283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0095100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTCGAGCTCGTCGGAAACCACCGAGATGATGATGAGAATGGCGGAGAAGCCGCCCAGTTTCAGTCAGACTTGTAGCATGCTCTACCAGTTCCTCAAGGAGAAGGGTGCCAACTTGGGAGATCTGAACCTCGACATGCAGCTCCCTAATAATAATGGGAGTGGTGAGATGTTTCGCCAGAAGACCCAGCAGATGAATTTTTTTCCGGTCATGGAGAAACCGAGGAACGTGCCGGCTCCGAGGGACTTCAAATCCATGGATTTGTTCCCTCAGCAAGCTGGATTTGGGGGTCCTCTGCCCAAGATGACTGATTCTAGTGTGAAGAAGACGGTCCCAGGGGAGCCCCAAAAGGCCCAGATGACCATCTTCTATGGTGGGCAAGTGATAGTGTTCGATGATTTTCCAGCTGAGAAGGCAAAGGAGGTGATGCTCTTAGCAAGCAAGGAAAGCTCCAACAGCCACCACGCTGCTCATGTTTCTGCTCCGGTCAAGGCCAACACCAACCCTGCTTTTGCCTCTCATTTGGGGAAGGTTCCGATCAATTCCGGCACCGGTACCGGCACCGCCCCGGTTGCTCCGAGCTCAAATCCTTTCCCCAAGTTCGGCAATCAAGTGATTCAGCAACAGGAGACCATCAAGCCAACCCCGACTCGTCCCATCATTTCTGATATACCAATGCAAAGGAAGGCTTCACTTCAACGCTTCCTGGCAAAGAGGAAGGATAGGATTAACAGCACGGCTCCATACCAAATGAGCAGCCCCGGTCCTTCAGGCCCTGCAAAGCCGGAAGCTGAAAGCAAGTCATGGTTAGGCTTGGCAGCTCAGCCAACTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0016020 GO:0016043 GO:0016829 GO:0016835 GO:0016836 GO:0019866 GO:0022607 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0050896 GO:0051259 GO:0051260 GO:0065003 GO:0070206 GO:0070207 GO:0070469 GO:0071840 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

278

Amino Acids

30.29

Weight (kDa)

9.6

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	114 - 147	1.3e-19	tify domain
Jas_motif	PF09425	225 - 250	2.3e-13	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19580 AT1G19580
fragaria_vesca	FvH4_1g12950
malus_domestica	MD02G1144100.v1.1 MD15G1257700.v1.1
prunus_persica	Prupe.7G157500_v2.0.a1 Prupe.7G157500_v2.0.a1
pyrus_communis	pycom02g11400 pycom15g22540
rosa_chinensis	RchiOBHm_Chr2g0101001
rosa_laevigata	RLG00000017035
rosa_multiflora	Rmu_sc0001862.1_g000005 Rmu_sc0007698.1_g000022 Rmu_sc0027174.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141660
rosa_rugosa	Rorug02G0095100
rosa_samantha	Rh2CG148600
rosa_wichuraiana	Rw2G011160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	554
AccB1I	GGYRCC	4 cut(s)	107, 548, 554, 560
AciI	CCGC	3 cut(s)	44, 53, 564
AcsI	RAATTY	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	753
AfaI	GTAC	1 cut(s)	556
AfiI	CCNNNNNNNGG	1 cut(s)	602
AgeI	ACCGGT	1 cut(s)	551
AgsI	TTSAA	2 cut(s)	250, 698
AjnI	CCWGG	2 cut(s)	334, 705
AluBI	AGCT	8 cut(s)	9, 142, 278, 407, 450, 582, 791, 821
AluI	AGCT	8 cut(s)	9, 142, 278, 407, 450, 582, 791, 821
Alw21I	GWGCWC	2 cut(s)	11, 584
Alw26I	GTCTC	1 cut(s)	623
AlwNI	CAGNNNCTG	1 cut(s)	776
AoxI	GGCC	3 cut(s)	351, 492, 772
ApeKI	GCWGC	4 cut(s)	139, 467, 756, 818
ApoI	RAATTY	1 cut(s)	196
AsiGI	ACCGGT	1 cut(s)	551
Asp718I	GGTACC	1 cut(s)	554
AspS9I	GGNCC	5 cut(s)	290, 331, 352, 764, 773
AsuC2I	CCSGG	2 cut(s)	569, 762
AsuHPI	GGTGA	2 cut(s)	176, 436
AvaII	GGWCC	3 cut(s)	290, 331, 764
BanI	GGYRCC	4 cut(s)	107, 548, 554, 560
BanII	GRGCYC	3 cut(s)	11, 345, 584
BbsI	GAAGAC	2 cut(s)	188, 332
Bbv12I	GWGCWC	2 cut(s)	11, 584
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	4 cut(s)	151, 454, 768, 830
BccI	CCATC	3 cut(s)	371, 641, 665
BceAI	ACGGC	1 cut(s)	753
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	2 cut(s)	336, 707
BcnI	CCSGG	2 cut(s)	569, 762
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	1 cut(s)	315
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	5 cut(s)	53, 140, 468, 757, 819
BlpI	GCTNAGC	1 cut(s)	822
BlsI	GCNGC	5 cut(s)	54, 141, 469, 758, 820
Bme1390I	CCNGG	4 cut(s)	336, 569, 707, 762
Bme18I	GGWCC	3 cut(s)	290, 331, 764
BmgT120I	GGNCC	5 cut(s)	290, 331, 352, 764, 773
BmrFI	CCNGG	4 cut(s)	336, 569, 707, 762
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	417
BmuI	ACTGGG	1 cut(s)	51
BpiI	GAAGAC	2 cut(s)	188, 332
Bpu10I	CCTNAGC	1 cut(s)	270
Bpu1102I	GCTNAGC	1 cut(s)	822
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	2 cut(s)	569, 762
BsaBI	GATNNNNATC	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	623
BsaJI	CCNNGG	7 cut(s)	221, 239, 255, 334, 335, 567, 760
BsaWI	WCCGGW	3 cut(s)	205, 484, 551
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse118I	RCCGGY	3 cut(s)	232, 551, 557
Bse1I	ACTGG	2 cut(s)	57, 88
Bse8I	GATNNNNATC	1 cut(s)	362
BseBI	CCWGG	2 cut(s)	336, 707
BseDI	CCNNGG	7 cut(s)	221, 239, 255, 334, 335, 567, 760
BseJI	GATNNNNATC	1 cut(s)	362
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMII	CTCAG	3 cut(s)	284, 399, 836
BseNI	ACTGG	2 cut(s)	57, 88
BseXI	GCAGC	4 cut(s)	151, 454, 768, 830
BseYI	CCCAGC	1 cut(s)	186
BshFI	GGCC	3 cut(s)	353, 494, 774
BshNI	GGYRCC	4 cut(s)	107, 548, 554, 560
BshTI	ACCGGT	1 cut(s)	551
BsiHKAI	GWGCWC	2 cut(s)	11, 584
BsiSI	CCGG	9 cut(s)	206, 233, 485, 546, 552, 558, 569, 762, 785
BslFI	GGGAC	3 cut(s)	257, 317, 639
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	1 cut(s)	623
BsmFI	GGGAC	3 cut(s)	257, 317, 639
BsnI	GGCC	3 cut(s)	353, 494, 774
Bso31I	GGTCTC	1 cut(s)	623
Bsp1286I	GDGCHC	3 cut(s)	11, 345, 584
Bsp143I	GATC	2 cut(s)	121, 537
Bsp1720I	GCTNAGC	1 cut(s)	822
Bsp19I	CCATGG	1 cut(s)	255
BspACI	CCGC	3 cut(s)	44, 53, 564
BspANI	GGCC	3 cut(s)	353, 494, 774
BspCNI	CTCAG	3 cut(s)	283, 400, 835
BspT107I	GGYRCC	4 cut(s)	107, 548, 554, 560
BspTNI	GGTCTC	1 cut(s)	623
BsrFI	RCCGGY	3 cut(s)	232, 551, 557
BsrI	ACTGG	2 cut(s)	57, 88
BssAI	RCCGGY	3 cut(s)	232, 551, 557
BssECI	CCNNGG	7 cut(s)	221, 239, 255, 334, 335, 567, 760
BssMI	GATC	2 cut(s)	121, 537
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	2 cut(s)	336, 707
Bst4CI	ACNGT	1 cut(s)	331
BstC8I	GCNNGC	4 cut(s)	80, 234, 276, 439
BstDEI	CTNAG	5 cut(s)	270, 408, 433, 822, 831
BstDSI	CCRYGG	1 cut(s)	255
BstKTI	GATC	2 cut(s)	124, 540
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	2 cut(s)	121, 537
BstMWI	GCNNNNNNNGC	4 cut(s)	413, 447, 456, 572
BstNI	CCWGG	2 cut(s)	336, 707
BstNSI	RCATGY	2 cut(s)	82, 139
BstSCI	CCNGG	4 cut(s)	334, 567, 705, 760
BstV1I	GCAGC	4 cut(s)	151, 454, 768, 830
BstV2I	GAAGAC	2 cut(s)	188, 332
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	3 cut(s)	353, 494, 774
BtgI	CCRYGG	1 cut(s)	255
Cac8I	GCNNGC	4 cut(s)	80, 234, 276, 439
CaiI	CAGNNNCTG	1 cut(s)	776
Cfr10I	RCCGGY	3 cut(s)	232, 551, 557
Cfr13I	GGNCC	5 cut(s)	290, 331, 352, 764, 773
Csp6I	GTAC	1 cut(s)	555
CspAI	ACCGGT	1 cut(s)	551
CviAII	CATG	6 cut(s)	79, 136, 211, 256, 473, 804
CviQI	GTAC	1 cut(s)	555
DdeI	CTNAG	5 cut(s)	270, 408, 433, 822, 831
DpnI	GATC	2 cut(s)	123, 539
DpnII	GATC	2 cut(s)	121, 537
EciI	GGCGGA	1 cut(s)	59
Ecl136II	GAGCTC	2 cut(s)	9, 582
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	3 cut(s)	11, 345, 584
Eco31I	GGTCTC	1 cut(s)	623
Eco47I	GGWCC	3 cut(s)	290, 331, 764
Eco53kI	GAGCTC	2 cut(s)	9, 582
Eco57I	CTGAAG	1 cut(s)	753
EcoICRI	GAGCTC	2 cut(s)	9, 582
EcoO109I	RGGNCCY	2 cut(s)	290, 773
EcoRII	CCWGG	2 cut(s)	334, 705
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	3 cut(s)	11, 345, 584
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	6 cut(s)	82, 139, 214, 259, 476, 807
FaiI	YATR	9 cut(s)	80, 137, 212, 257, 372, 474, 671, 745, 805
FalI	AAGNNNNNCTT	2 cut(s)	673, 705
FaqI	GGGAC	3 cut(s)	257, 317, 639
FatI	CATG	6 cut(s)	78, 135, 210, 255, 472, 803
Fnu4HI	GCNGC	5 cut(s)	53, 140, 468, 757, 819
FriOI	GRGCYC	3 cut(s)	11, 345, 584
Fsp4HI	GCNGC	5 cut(s)	53, 140, 468, 757, 819
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	5 cut(s)	53, 140, 468, 757, 819
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	3 cut(s)	353, 494, 774
HapII	CCGG	9 cut(s)	206, 233, 485, 546, 552, 558, 569, 762, 785
Hin1II	CATG	6 cut(s)	82, 139, 214, 259, 476, 807
HinfI	GANTC	3 cut(s)	311, 616, 649
HpaII	CCGG	9 cut(s)	206, 233, 485, 546, 552, 558, 569, 762, 785
HphI	GGTGA	2 cut(s)	176, 436
Hpy188I	TCNGA	7 cut(s)	16, 69, 126, 240, 537, 579, 667
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	6 cut(s)	97, 406, 523, 679, 712, 777
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	139, 679, 779
HpyF10VI	GCNNNNNNNGC	4 cut(s)	413, 447, 456, 572
HpyF3I	CTNAG	5 cut(s)	270, 408, 433, 822, 831
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	6 cut(s)	82, 139, 214, 259, 476, 807
KpnI	GGTACC	1 cut(s)	558
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	121, 537
LmnI	GCTCC	7 cut(s)	147, 241, 340, 455, 487, 580, 745
Lsp1109I	GCAGC	4 cut(s)	151, 454, 768, 830
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	228
MalI	GATC	2 cut(s)	123, 539
MboI	GATC	2 cut(s)	121, 537
MboII	GAAGA	4 cut(s)	193, 334, 337, 358
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	3 cut(s)	11, 345, 584
MluCI	AATT	2 cut(s)	196, 541
MlyI	GAGTC	1 cut(s)	643
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	9 cut(s)	104, 140, 216, 234, 279, 303, 415, 526, 708
MroNI	GCCGGC	1 cut(s)	232
MseI	TTAA	1 cut(s)	729
MslI	CAYNNNNRTG	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	407
MspI	CCGG	9 cut(s)	206, 233, 485, 546, 552, 558, 569, 762, 785
MspR9I	CCNGG	4 cut(s)	336, 569, 707, 762
MvaI	CCWGG	2 cut(s)	336, 707
MwoI	GCNNNNNNNGC	4 cut(s)	413, 447, 456, 572
NaeI	GCCGGC	1 cut(s)	234
NciI	CCSGG	2 cut(s)	569, 762
NcoI	CCATGG	1 cut(s)	255
NdeII	GATC	2 cut(s)	121, 537
NgoMIV	GCCGGC	1 cut(s)	232
NlaIII	CATG	6 cut(s)	82, 139, 214, 259, 476, 807
NspI	RCATGY	2 cut(s)	82, 139
PaeI	GCATGC	1 cut(s)	82
PasI	CCCWGGG	1 cut(s)	335
PdiI	GCCGGC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	311, 616
PinAI	ACCGGT	1 cut(s)	551
PkrI	GCNGC	5 cut(s)	54, 141, 469, 758, 820
PleI	GAGTC	1 cut(s)	643
PpsI	GAGTC	1 cut(s)	643
PpuMI	RGGWCCY	1 cut(s)	290
Psp124BI	GAGCTC	2 cut(s)	11, 584
Psp5II	RGGWCCY	1 cut(s)	290
Psp6I	CCWGG	2 cut(s)	334, 705
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	2 cut(s)	334, 705
PspPI	GGNCC	5 cut(s)	290, 331, 352, 764, 773
PspPPI	RGGWCCY	1 cut(s)	290
PstNI	CAGNNNCTG	1 cut(s)	776
PsuI	RGATCY	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	1 cut(s)	556
RsaNI	GTAC	1 cut(s)	555
RseI	CAYNNNNRTG	1 cut(s)	26
SacI	GAGCTC	2 cut(s)	11, 584
SaqAI	TTAA	1 cut(s)	729
SatI	GCNGC	5 cut(s)	53, 140, 468, 757, 819
Sau3AI	GATC	2 cut(s)	121, 537
Sau96I	GGNCC	5 cut(s)	290, 331, 352, 764, 773
SchI	GAGTC	1 cut(s)	643
ScrFI	CCNGG	4 cut(s)	336, 569, 707, 762
SduI	GDGCHC	3 cut(s)	11, 345, 584
SfaNI	GCATC	1 cut(s)	417
SinI	GGWCC	3 cut(s)	290, 331, 764
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SphI	GCATGC	1 cut(s)	82
Sse9I	AATT	2 cut(s)	196, 541
SsiI	CCGC	3 cut(s)	44, 53, 564
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	2 cut(s)	11, 584
StyD4I	CCNGG	4 cut(s)	334, 567, 705, 760
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	3 cut(s)	5, 132, 393
TasI	AATT	2 cut(s)	196, 541
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	2 cut(s)	311, 616
Tru1I	TTAA	1 cut(s)	729
Tru9I	TTAA	1 cut(s)	729
TseI	GCWGC	4 cut(s)	139, 467, 756, 818
TspDTI	ATGAA	1 cut(s)	209
VpaK11BI	GGWCC	3 cut(s)	290, 331, 764
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	2 cut(s)	82, 139
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.