Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012856

Physical Location & Seq

Genomic Coordinates Reverse (-)

16668504 .. 16670009

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g22540.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGGACCCTTGGCAGAGCAATCTACACCGTCGGATTCTGGATCCGCGAGACCGGCCAAGCCATTGACCGCCTCGGTTCCCGCCTCCAAGGCAACTACTACTTCCAAGAACAGCTATCGCGGCATCGGACGCTGATGAACGTGTTTGACAAAGCTCCTGTGGTCGATAAGGAGGCGTTTGTGGCGCCCAGTGCGTCGATCATAGGCCAAGTTCAGGTGGGCCGAGGCTCCTCCATTTGGTACGGTTGCGTTTTGAGAGGTGATGCTAACAGCGTCAGCATTGGGTCTGGGACCAACATTCAAGACAATTCCCTTGTTCATGTGGCAAAATCTAACTTGACTGGCAAGGTTTTGCCTACCATTATCGGAGACAATGTTACTGTAGGCCACAGTGCTGTCTTGCATGGATGTACTGTAGAGGATGAGGCATTTGTTGGTGTGGCTGCAACCTTGCTTGATGGGGTTTATGTTGAGAAACACGCCATGGTTGCTGCCGGAGCCCTTGTCAGGCAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGGAATCCAGCAAAGTTCCTGAGAAAGCTCACAGAAGACGAGATGGCCTTCATCTCCCAGTCAGCCTTAAATTATTCCAACTTGGCTAAGGTTCATGCAGCTGAAAATGCAAAGCCCCTCGACGAGATAGAGTTTCAGAAGGTTCTGCGAAAGAAGTTTGCACGCCGTGATGAGGAATATGACTCGATGTTGGGTGTCACTCGTGAGACACCGGCAGAGACTACTCTTCCTGATAACGCATCGCCACCTAAGGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0016020 GO:0016043 GO:0016829 GO:0016835 GO:0016836 GO:0019866 GO:0022607 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0050896 GO:0051259 GO:0051260 GO:0065003 GO:0070206 GO:0070207 GO:0070469 GO:0071840 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

269

Amino Acids

29.02

Weight (kDa)

6.6

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19580 AT1G19580
fragaria_vesca	FvH4_1g12950
malus_domestica	MD02G1144100.v1.1 MD15G1257700.v1.1
prunus_persica	Prupe.7G157500_v2.0.a1 Prupe.7G157500_v2.0.a1
pyrus_communis	pycom02g11400 pycom15g22540
rosa_chinensis	RchiOBHm_Chr2g0101001
rosa_laevigata	RLG00000017035
rosa_multiflora	Rmu_sc0001862.1_g000005 Rmu_sc0007698.1_g000022 Rmu_sc0027174.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141660
rosa_rugosa	Rorug02G0095100
rosa_samantha	Rh2CG148600
rosa_wichuraiana	Rw2G011160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	184
AccII	CGCG	2 cut(s)	48, 121
AciI	CCGC	4 cut(s)	46, 70, 82, 121
AclWI	GGATC	4 cut(s)	37, 50, 517, 530
AcoI	YGGCCR	1 cut(s)	55
AcyI	GRCGYC	1 cut(s)	185
AdeI	CACNNNGTG	1 cut(s)	713
AfaI	GTAC	2 cut(s)	242, 412
AfiI	CCNNNNNNNGG	4 cut(s)	214, 237, 507, 718
AflIII	ACRYGT	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	302
AluBI	AGCT	4 cut(s)	115, 155, 574, 647
AluI	AGCT	4 cut(s)	115, 155, 574, 647
Alw26I	GTCTC	4 cut(s)	44, 363, 746, 758
AlwI	GGATC	4 cut(s)	37, 50, 517, 530
AoxI	GGCC	5 cut(s)	55, 205, 220, 385, 591
ApeKI	GCWGC	4 cut(s)	443, 491, 644, 800
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	3 cut(s)	6, 220, 291
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	6, 291
AxyI	CCTNAGG	1 cut(s)	795
BamHI	GGATCC	2 cut(s)	42, 522
BanI	GGYRCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	502
BauI	CACGAG	1 cut(s)	747
BbsI	GAAGAC	1 cut(s)	588
BbvI	GCAGC	4 cut(s)	430, 478, 656, 787
BccI	CCATC	2 cut(s)	452, 583
BceAI	ACGGC	1 cut(s)	696
BcoDI	GTCTC	4 cut(s)	44, 363, 746, 758
BfmI	CTRYAG	2 cut(s)	381, 414
BfoI	RGCGCY	1 cut(s)	188
BglI	GCCNNNNNGGC	1 cut(s)	90
BisI	GCNGC	5 cut(s)	122, 444, 492, 645, 801
BlsI	GCNGC	5 cut(s)	123, 445, 493, 646, 802
Bme18I	GGWCC	2 cut(s)	6, 291
BmgT120I	GGNCC	3 cut(s)	6, 220, 291
BmiI	GGNNCC	9 cut(s)	7, 8, 44, 79, 186, 229, 292, 499, 524
BmrI	ACTGGG	2 cut(s)	183, 598
BmsI	GCATC	3 cut(s)	133, 253, 794
BmuI	ACTGGG	2 cut(s)	183, 598
BpiI	GAAGAC	1 cut(s)	588
Bpu10I	CCTNAGC	1 cut(s)	633
BsaHI	GRCGYC	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	5 cut(s)	10, 73, 88, 223, 483
BsaXI	ACNNNNNCTCC	4 cut(s)	360, 390, 489, 519
Bsc4I	CCNNNNNNNGG	4 cut(s)	214, 237, 507, 718
Bse118I	RCCGGY	2 cut(s)	53, 757
Bse1I	ACTGG	3 cut(s)	189, 346, 604
Bse21I	CCTNAGG	1 cut(s)	795
BseDI	CCNNGG	5 cut(s)	10, 73, 88, 223, 483
BseGI	GGATG	2 cut(s)	413, 427
BseLI	CCNNNNNNNGG	4 cut(s)	214, 237, 507, 718
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	3 cut(s)	189, 346, 604
BseRI	GAGGAG	1 cut(s)	220
BseXI	GCAGC	4 cut(s)	430, 478, 656, 787
Bsh1236I	CGCG	2 cut(s)	48, 121
BshFI	GGCC	5 cut(s)	57, 207, 222, 387, 593
BshNI	GGYRCC	1 cut(s)	184
BsiSI	CCGG	3 cut(s)	54, 495, 758
BslFI	GGGAC	2 cut(s)	19, 304
BslI	CCNNNNNNNGG	4 cut(s)	214, 237, 507, 718
BsmAI	GTCTC	4 cut(s)	44, 363, 746, 758
BsmFI	GGGAC	2 cut(s)	19, 304
BsnI	GGCC	5 cut(s)	57, 207, 222, 387, 593
Bso31I	GGTCTC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	3 cut(s)	42, 198, 522
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	4 cut(s)	46, 70, 82, 121
BspANI	GGCC	5 cut(s)	57, 207, 222, 387, 593
BspCNI	CTCAG	1 cut(s)	558
BspFNI	CGCG	2 cut(s)	48, 121
BspLI	GGNNCC	9 cut(s)	7, 8, 44, 79, 186, 229, 292, 499, 524
BspPI	GGATC	4 cut(s)	37, 50, 517, 530
BspT107I	GGYRCC	1 cut(s)	184
BspTNI	GGTCTC	1 cut(s)	44
BsrFI	RCCGGY	2 cut(s)	53, 757
BsrI	ACTGG	3 cut(s)	189, 346, 604
BssAI	RCCGGY	2 cut(s)	53, 757
BssECI	CCNNGG	5 cut(s)	10, 73, 88, 223, 483
BssMI	GATC	3 cut(s)	42, 198, 522
BssNI	GRCGYC	1 cut(s)	185
BssSI	CACGAG	1 cut(s)	747
BssT1I	CCWWGG	3 cut(s)	10, 88, 483
Bst2BI	CACGAG	1 cut(s)	747
Bst4CI	ACNGT	5 cut(s)	31, 245, 382, 392, 415
Bst6I	CTCTTC	1 cut(s)	777
BstACI	GRCGYC	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	709
BstDEI	CTNAG	3 cut(s)	566, 633, 795
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	2 cut(s)	413, 427
BstFNI	CGCG	2 cut(s)	48, 121
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	3 cut(s)	45, 201, 525
BstMAI	GTCTC	4 cut(s)	44, 363, 746, 758
BstMBI	GATC	3 cut(s)	42, 198, 522
BstMWI	GCNNNNNNNGC	9 cut(s)	54, 90, 121, 130, 182, 191, 488, 497, 653
BstSFI	CTRYAG	2 cut(s)	381, 414
BstUI	CGCG	2 cut(s)	48, 121
BstV1I	GCAGC	4 cut(s)	430, 478, 656, 787
BstV2I	GAAGAC	1 cut(s)	588
BstX2I	RGATCY	2 cut(s)	42, 522
BstYI	RGATCY	2 cut(s)	42, 522
Bsu36I	CCTNAGG	1 cut(s)	795
BsuRI	GGCC	5 cut(s)	57, 207, 222, 387, 593
BtgI	CCRYGG	1 cut(s)	483
BtgZI	GCGATG	1 cut(s)	771
BtsCI	GGATG	2 cut(s)	413, 427
BtsIMutI	CAGTG	2 cut(s)	196, 397
Cac8I	GCNNGC	1 cut(s)	709
CfoI	GCGC	1 cut(s)	187
Cfr10I	RCCGGY	2 cut(s)	53, 757
Cfr13I	GGNCC	3 cut(s)	6, 220, 291
CseI	GACGC	3 cut(s)	139, 183, 262
Csp6I	GTAC	2 cut(s)	241, 411
CviAII	CATG	4 cut(s)	320, 404, 484, 641
CviQI	GTAC	2 cut(s)	241, 411
DdeI	CTNAG	3 cut(s)	566, 633, 795
DinI	GGCGCC	1 cut(s)	186
DpnI	GATC	3 cut(s)	44, 200, 524
DpnII	GATC	3 cut(s)	42, 198, 522
DraIII	CACNNNGTG	1 cut(s)	713
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	777
EarI	CTCTTC	1 cut(s)	777
Eco130I	CCWWGG	3 cut(s)	10, 88, 483
Eco24I	GRGCYC	1 cut(s)	502
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	2 cut(s)	6, 291
Eco81I	CCTNAGG	1 cut(s)	795
EcoO109I	RGGNCCY	1 cut(s)	6
EcoT14I	CCWWGG	3 cut(s)	10, 88, 483
EcoT38I	GRGCYC	1 cut(s)	502
EgeI	GGCGCC	1 cut(s)	186
EheI	GGCGCC	1 cut(s)	186
ErhI	CCWWGG	3 cut(s)	10, 88, 483
FaeI	CATG	4 cut(s)	323, 407, 487, 644
FaiI	YATR	8 cut(s)	203, 321, 405, 468, 485, 541, 642, 726
FaqI	GGGAC	2 cut(s)	19, 304
FatI	CATG	4 cut(s)	319, 403, 483, 640
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	5 cut(s)	122, 444, 492, 645, 801
FokI	GGATG	2 cut(s)	420, 434
FriOI	GRGCYC	1 cut(s)	502
Fsp4HI	GCNGC	5 cut(s)	122, 444, 492, 645, 801
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	5 cut(s)	122, 444, 492, 645, 801
HaeII	RGCGCY	1 cut(s)	188
HaeIII	GGCC	5 cut(s)	57, 207, 222, 387, 593
HapII	CCGG	3 cut(s)	54, 495, 758
HgaI	GACGC	3 cut(s)	139, 183, 262
HhaI	GCGC	1 cut(s)	187
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	4 cut(s)	323, 407, 487, 644
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	3 cut(s)	36, 550, 728
HpaII	CCGG	3 cut(s)	54, 495, 758
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	4 cut(s)	35, 129, 368, 684
Hpy188III	TCNNGA	5 cut(s)	40, 302, 565, 749, 776
Hpy99I	CGWCG	3 cut(s)	35, 199, 671
HpyAV	CCTTC	2 cut(s)	604, 679
HpyCH4III	ACNGT	5 cut(s)	31, 245, 382, 392, 415
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	5 cut(s)	403, 446, 644, 656, 707
HpyF10VI	GCNNNNNNNGC	9 cut(s)	54, 90, 121, 130, 182, 191, 488, 497, 653
HpyF3I	CTNAG	3 cut(s)	566, 633, 795
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	4 cut(s)	323, 407, 487, 644
HspAI	GCGC	1 cut(s)	185
KasI	GGCGCC	1 cut(s)	184
KflI	GGGWCCC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	42, 198, 522
LmnI	GCTCC	3 cut(s)	160, 233, 497
Lsp1109I	GCAGC	4 cut(s)	430, 478, 656, 787
LweI	GCATC	3 cut(s)	133, 253, 794
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	2 cut(s)	376, 742
MalI	GATC	3 cut(s)	44, 200, 524
MboI	GATC	3 cut(s)	42, 198, 522
MboII	GAAGA	2 cut(s)	593, 764
MflI	RGATCY	2 cut(s)	42, 522
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	2 cut(s)	307, 616
Mly113I	GGCGCC	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	722
MmeI	TCCRAC	2 cut(s)	13, 648
MseI	TTAA	2 cut(s)	614, 805
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	3 cut(s)	54, 495, 758
MvnI	CGCG	2 cut(s)	48, 121
MwoI	GCNNNNNNNGC	9 cut(s)	54, 90, 121, 130, 182, 191, 488, 497, 653
NarI	GGCGCC	1 cut(s)	185
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	3 cut(s)	42, 198, 522
NlaIII	CATG	4 cut(s)	323, 407, 487, 644
NlaIV	GGNNCC	9 cut(s)	7, 8, 44, 79, 186, 229, 292, 499, 524
NmeAIII	GCCGAG	1 cut(s)	248
NmuCI	GTSAC	1 cut(s)	742
PfeI	GAWTC	2 cut(s)	36, 550
PkrI	GCNGC	5 cut(s)	123, 445, 493, 646, 802
PleI	GAGTC	1 cut(s)	722
PluTI	GGCGCC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	722
PpuMI	RGGWCCY	1 cut(s)	6
Psp5II	RGGWCCY	1 cut(s)	6
PspN4I	GGNNCC	9 cut(s)	7, 8, 44, 79, 186, 229, 292, 499, 524
PspPI	GGNCC	3 cut(s)	6, 220, 291
PspPPI	RGGWCCY	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	42, 522
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	2 cut(s)	242, 412
RsaNI	GTAC	2 cut(s)	241, 411
SaqAI	TTAA	2 cut(s)	614, 805
SatI	GCNGC	5 cut(s)	122, 444, 492, 645, 801
Sau3AI	GATC	3 cut(s)	42, 198, 522
Sau96I	GGNCC	3 cut(s)	6, 220, 291
SchI	GAGTC	1 cut(s)	722
SduI	GDGCHC	1 cut(s)	502
SfaNI	GCATC	3 cut(s)	133, 253, 794
SfcI	CTRYAG	2 cut(s)	381, 414
SfoI	GGCGCC	1 cut(s)	186
SinI	GGWCC	2 cut(s)	6, 291
Sse9I	AATT	2 cut(s)	307, 616
SsiI	CCGC	4 cut(s)	46, 70, 82, 121
SspDI	GGCGCC	1 cut(s)	184
StyI	CCWWGG	3 cut(s)	10, 88, 483
TaaI	ACNGT	5 cut(s)	31, 245, 382, 392, 415
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	4 cut(s)	165, 197, 666, 731
TasI	AATT	2 cut(s)	307, 616
TatI	WGTACW	1 cut(s)	410
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	2 cut(s)	36, 550
Tru1I	TTAA	2 cut(s)	614, 805
Tru9I	TTAA	2 cut(s)	614, 805
TscAI	CASTG	2 cut(s)	196, 397
TseFI	GTSAC	1 cut(s)	742
TseI	GCWGC	4 cut(s)	443, 491, 644, 800
Tsp45I	GTSAC	1 cut(s)	742
TspDTI	ATGAA	4 cut(s)	152, 308, 586, 629
TspRI	CASTG	2 cut(s)	196, 397
VpaK11BI	GGWCC	2 cut(s)	6, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.