Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013918

Physical Location & Seq

Genomic Coordinates Reverse (-)

6914518 .. 6916823

Gene Structure 2306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G19920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGTCTCTTATGATCAGATCCTCTTACGTTTCTCACATCACTCTCTTCCAACCTAGAAACTCAAAACCATCCTCTTTCACCAACCAAATCTCCTTCCTTTCCTCTTCTAATAACAACCCTTTTCTCAATTTGGTCTATAAACGAAACCTAACAATGCAATCTGTTTCGAAAATGACTGTTAAGAGCTCGTTGATTGATCCCGACGGTGGTGAATTGGTGGAATTGATTGTACCGGAAACTGAGATTGGAGTGAAGAAAGCTGAATCAGAGACGATGCCTAAAGTGAAGCTGAATCAGATTGATCTTGAGTGGGTTCATGTGATTAGTGAAGGTTGGGCTAGTCCTTTAAAAGGGTTCATGAGAGAAGATGAGTATTTGCAAAGTTTGCATTTTAATTCTCTTAGGTTAAAAAATGGGACTTTTGTGAACATGTCTCTTCCTATTGTTCTTGCTATTGATGATGATACTAAGGAACAGATCGGATCATCTGAGAATGTTGCTCTTGTTTGCCCTCAAGGAGATATCATTGGTTCTCTCCGAAGTGTGGAGATTTACAAACACAATAAGGAAGAAAGGATAGCTAGAACTTGGGGAACTACTTCTCCAGGATTGCCTTATGTGGAAGAATATATTACTCCATCTGGAAACTGGCTGATTGGTGGTGATTTAGAAGTTTTTGAACCGATTAAGTATAACGATGGGCTTGATCATTACAGGCTCTCTCCTAAACAGCTTAGGGAAGAGTTTGATAATCGTCAAGCAGATGCTGTTTTTGCGTTTCAGTTAAGGAATCCTGTGCACAATGGACATGCTCTGTTGATGAATGATACACGGAAAAGGCTTTTGGAAATGGGGTACAAGAACCCTGTTCTCTTGCTTCATCCTTTAGGAGGTTTCACTAAAGCTGATGATGTTCCTCTTGATGTTAGAATGGAACAACATAGCAAGGTTCTAGAAGATGGAGTTCTTGACCCGAAGACTACTATTGTCTCGATCTTTCCGTCACCGATGCACTATGCTGGTCCAACTGAAGTTCAATGGCACGCCAAGGCAAGGATTAACGCTGGTGCTAATTTCTACATTGTAGGTCGTGATCCTGCAGGAATGGGCCACCCTACTGAGAAGAGAGATCTATATGATCCTGATCATGGAAAGAGAGTCTTAAGCATGGCCCCTGGACTTGAGAAACTCAATATTCTTCCATTTAGGGTTGCAGCTTACGATACAATCGAGAAGAAGATGGCGTTTTTCGATCCTTCTCGTGCAAAAGAGTTTCTTTTCATTTCTGGAACAAAGATGCGAACTTATGCAAGAACAGGGGAGAATCCTCCAGATGGATTTATGTGTCCGAGTGGATGGAATGTTCTTGTCAAATACTATGAGAGCTTGCAAGAGAGCGAAGCAAAACAACAAGCCGTTGTTTCAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004020 GO:0004779 GO:0004781 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009970 GO:0009987 GO:0009991 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0070566 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko00230 ko00261 ko00450 ko00920 ko01100 ko01120 ko01130 map00230 map00261 map00450 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

ATP-sulfurylase PUA_2

Protein Analysis

476

Amino Acids

53.64

Weight (kDa)

6.15

Isoelectric Point (pI)

54.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUA_2	PF14306	65 - 227	2.7e-44	PUA-like domain
ATP-sulfurylase	PF01747	237 - 459	1.4e-67	ATP-sulfurylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19920
fragaria_vesca	FvH4_2g38710
malus_domestica	MD08G1014800.v1.1 MD15G1014100.v1.1
prunus_persica	Prupe.1G367700_v2.0.a1
pyrus_communis	pycom08g01320 pycom15g01220
rosa_chinensis	RchiOBHm_Chr6g0302601
rosa_laevigata	RLG00000011158
rosa_multiflora	Rmu_sc0005455.1_g000010
rosa_roxburghii	Rroxscaffold_7G00165530
rosa_rugosa	Rorug06G0315200
rosa_samantha	Rh6AG428600 Rh6BG473900 Rh6CG440800 Rh6DG427600
rosa_wichuraiana	Rw6G037090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	6 cut(s)	12, 191, 490, 1088, 1133, 1247
AcuI	CTGAAG	1 cut(s)	1050
AfaI	GTAC	2 cut(s)	231, 857
AfiI	CCNNNNNNNGG	7 cut(s)	206, 350, 544, 890, 1053, 1148, 1334
AflII	CTTAAG	1 cut(s)	1162
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	2 cut(s)	680, 1037
AjnI	CCWGG	2 cut(s)	604, 1174
AjuI	GAANNNNNNNTTGG	4 cut(s)	228, 260, 827, 859
AloI	GAACNNNNNNTCC	4 cut(s)	586, 618, 1347, 1379
AluBI	AGCT	8 cut(s)	186, 260, 289, 581, 733, 905, 1217, 1386
AluI	AGCT	8 cut(s)	186, 260, 289, 581, 733, 905, 1217, 1386
Alw21I	GWGCWC	2 cut(s)	188, 801
Alw26I	GTCTC	4 cut(s)	9, 263, 438, 994
Alw44I	GTGCAC	1 cut(s)	797
AlwI	GGATC	6 cut(s)	12, 191, 490, 1088, 1133, 1247
AlwNI	CAGNNNCTG	1 cut(s)	767
AoxI	GGCC	2 cut(s)	1108, 1170
ApaLI	GTGCAC	1 cut(s)	797
ApeKI	GCWGC	1 cut(s)	1214
Asp700I	GAANNNNTTC	1 cut(s)	598
AspS9I	GGNCC	3 cut(s)	1022, 1108, 1171
AsuHPI	GGTGA	4 cut(s)	70, 221, 674, 996
AsuII	TTCGAA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	1022
BaeGI	GKGCMC	1 cut(s)	801
BanII	GRGCYC	1 cut(s)	188
BauI	CACGAG	1 cut(s)	1260
BbsI	GAAGAC	1 cut(s)	983
Bbv12I	GWGCWC	2 cut(s)	188, 801
BbvI	GCAGC	1 cut(s)	1226
BccI	CCATC	7 cut(s)	76, 646, 692, 953, 1234, 1328, 1350
BceAI	ACGGC	1 cut(s)	1400
BciT130I	CCWGG	2 cut(s)	606, 1176
BclI	TGATCA	3 cut(s)	12, 706, 1144
BcoDI	GTCTC	4 cut(s)	9, 263, 438, 994
BfaI	CTAG	4 cut(s)	54, 339, 582, 953
BfmI	CTRYAG	1 cut(s)	1098
BfrI	CTTAAG	1 cut(s)	1162
BglII	AGATCT	1 cut(s)	1129
BisI	GCNGC	1 cut(s)	1215
BlsI	GCNGC	1 cut(s)	1216
Bme1390I	CCNGG	2 cut(s)	606, 1176
Bme18I	GGWCC	1 cut(s)	1022
BmgT120I	GGNCC	3 cut(s)	1022, 1108, 1171
BmiI	GGNNCC	1 cut(s)	1173
BmrFI	CCNGG	2 cut(s)	606, 1176
BmsI	GCATC	4 cut(s)	264, 754, 999, 1287
BpiI	GAAGAC	1 cut(s)	983
BpmI	CTGGAG	2 cut(s)	588, 1314
Bpu10I	CCTNAGC	1 cut(s)	734
Bpu14I	TTCGAA	1 cut(s)	167
BpuEI	CTTGAG	3 cut(s)	326, 498, 1202
BsaBI	GATNNNNATC	1 cut(s)	1143
BsaJI	CCNNGG	2 cut(s)	1047, 1174
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 586, 616
Bsc4I	CCNNNNNNNGG	7 cut(s)	206, 350, 544, 890, 1053, 1148, 1334
Bse1I	ACTGG	1 cut(s)	653
Bse8I	GATNNNNATC	1 cut(s)	1143
BseBI	CCWGG	2 cut(s)	606, 1176
BseDI	CCNNGG	2 cut(s)	1047, 1174
BseGI	GGATG	3 cut(s)	68, 880, 1361
BseJI	GATNNNNATC	1 cut(s)	1143
BseLI	CCNNNNNNNGG	7 cut(s)	206, 350, 544, 890, 1053, 1148, 1334
BseMII	CTCAG	3 cut(s)	231, 480, 1110
BseNI	ACTGG	1 cut(s)	653
BseSI	GKGCMC	1 cut(s)	801
BseXI	GCAGC	1 cut(s)	1226
BshFI	GGCC	2 cut(s)	1110, 1172
BsiHKAI	GWGCWC	2 cut(s)	188, 801
BsiSI	CCGG	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	7 cut(s)	206, 350, 544, 890, 1053, 1148, 1334
BsmAI	GTCTC	4 cut(s)	9, 263, 438, 994
BsmBI	CGTCTC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	430
BsnI	GGCC	2 cut(s)	1110, 1172
Bsp119I	TTCGAA	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	188, 801
BspANI	GGCC	2 cut(s)	1110, 1172
BspCNI	CTCAG	3 cut(s)	232, 481, 1111
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	1 cut(s)	1173
BspMAI	CTGCAG	1 cut(s)	1102
BspPI	GGATC	6 cut(s)	12, 191, 490, 1088, 1133, 1247
BspT104I	TTCGAA	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	1162
BsrI	ACTGG	1 cut(s)	653
BssECI	CCNNGG	2 cut(s)	1047, 1174
BssSI	CACGAG	1 cut(s)	1260
BssT1I	CCWWGG	1 cut(s)	1047
Bst2BI	CACGAG	1 cut(s)	1260
Bst2UI	CCWGG	2 cut(s)	606, 1176
Bst4CI	ACNGT	2 cut(s)	178, 206
Bst6I	CTCTTC	5 cut(s)	50, 109, 441, 735, 1118
BstAFI	CTTAAG	1 cut(s)	1162
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstBI	TTCGAA	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	1044, 1388
BstDEI	CTNAG	6 cut(s)	240, 401, 468, 489, 734, 1119
BstENI	CCTNNNNNAGG	2 cut(s)	348, 888
BstF5I	GGATG	3 cut(s)	68, 880, 1361
BstMAI	GTCTC	4 cut(s)	9, 263, 438, 994
BstMWI	GCNNNNNNNGC	2 cut(s)	385, 773
BstNI	CCWGG	2 cut(s)	606, 1176
BstNSI	RCATGY	2 cut(s)	433, 812
BstSCI	CCNGG	2 cut(s)	604, 1174
BstSFI	CTRYAG	1 cut(s)	1098
BstSLI	GKGCMC	1 cut(s)	801
BstV1I	GCAGC	1 cut(s)	1226
BstV2I	GAAGAC	1 cut(s)	983
BstX2I	RGATCY	2 cut(s)	17, 1129
BstYI	RGATCY	2 cut(s)	17, 1129
BsuRI	GGCC	2 cut(s)	1110, 1172
BtsCI	GGATG	3 cut(s)	68, 880, 1361
Cac8I	GCNNGC	2 cut(s)	1044, 1388
CaiI	CAGNNNCTG	1 cut(s)	767
CciI	TCATGA	1 cut(s)	357
Cfr13I	GGNCC	3 cut(s)	1022, 1108, 1171
Csp6I	GTAC	2 cut(s)	230, 856
CviAII	CATG	6 cut(s)	317, 358, 430, 809, 1148, 1168
CviQI	GTAC	2 cut(s)	230, 856
DdeI	CTNAG	6 cut(s)	240, 401, 468, 489, 734, 1119
DraI	TTTAAA	1 cut(s)	348
Eam1104I	CTCTTC	5 cut(s)	50, 109, 441, 735, 1118
EarI	CTCTTC	5 cut(s)	50, 109, 441, 735, 1118
Ecl136II	GAGCTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	1047
Eco24I	GRGCYC	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	1022
Eco53kI	GAGCTC	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	1050
EcoICRI	GAGCTC	1 cut(s)	186
EcoNI	CCTNNNNNAGG	2 cut(s)	348, 888
EcoRII	CCWGG	2 cut(s)	604, 1174
EcoRV	GATATC	1 cut(s)	523
EcoT14I	CCWWGG	1 cut(s)	1047
EcoT38I	GRGCYC	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	1047
Esp3I	CGTCTC	1 cut(s)	263
FaeI	CATG	6 cut(s)	320, 361, 433, 812, 1151, 1171
FalI	AAGNNNNNCTT	4 cut(s)	1145, 1177, 1260, 1292
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	6 cut(s)	316, 357, 429, 808, 1147, 1167
FbaI	TGATCA	3 cut(s)	12, 706, 1144
Fnu4HI	GCNGC	1 cut(s)	1215
FokI	GGATG	3 cut(s)	55, 867, 1368
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	1215
FspBI	CTAG	4 cut(s)	54, 339, 582, 953
GluI	GCNGC	1 cut(s)	1215
GsuI	CTGGAG	2 cut(s)	588, 1314
HaeIII	GGCC	2 cut(s)	1110, 1172
HapII	CCGG	1 cut(s)	233
Hin1II	CATG	6 cut(s)	320, 361, 433, 812, 1151, 1171
HinfI	GANTC	5 cut(s)	263, 292, 790, 1158, 1324
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	4 cut(s)	70, 221, 674, 996
Hpy166II	GTNNAC	2 cut(s)	427, 799
Hpy188I	TCNGA	7 cut(s)	17, 268, 297, 482, 490, 539, 1350
Hpy8I	GTNNAC	2 cut(s)	427, 799
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	103, 323, 1266
HpyCH4III	ACNGT	2 cut(s)	178, 206
HpyCH4IV	ACGT	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	2 cut(s)	385, 773
HpyF3I	CTNAG	6 cut(s)	240, 401, 468, 489, 734, 1119
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	6 cut(s)	320, 361, 433, 812, 1151, 1171
Ksp22I	TGATCA	3 cut(s)	12, 706, 1144
Lsp1109I	GCAGC	1 cut(s)	1226
LweI	GCATC	4 cut(s)	264, 754, 999, 1287
MaeI	CTAG	4 cut(s)	54, 339, 582, 953
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	1002
MflI	RGATCY	2 cut(s)	17, 1129
MhlI	GDGCHC	2 cut(s)	188, 801
MluCI	AATT	5 cut(s)	127, 212, 221, 394, 1072
MlyI	GAGTC	1 cut(s)	1167
MmeI	TCCRAC	2 cut(s)	73, 1049
MnlI	CCTC	7 cut(s)	31, 82, 112, 522, 884, 927, 1338
MroXI	GAANNNNTTC	1 cut(s)	598
MseI	TTAA	8 cut(s)	180, 347, 393, 407, 687, 785, 1059, 1163
MspCI	CTTAAG	1 cut(s)	1162
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	606, 1176
MvaI	CCWGG	2 cut(s)	606, 1176
MwoI	GCNNNNNNNGC	2 cut(s)	385, 773
NlaIII	CATG	6 cut(s)	320, 361, 433, 812, 1151, 1171
NlaIV	GGNNCC	1 cut(s)	1173
NmuCI	GTSAC	1 cut(s)	1002
NspI	RCATGY	2 cut(s)	433, 812
NspV	TTCGAA	1 cut(s)	167
PagI	TCATGA	1 cut(s)	357
PciI	ACATGT	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	2 cut(s)	998, 1227
PdmI	GAANNNNTTC	1 cut(s)	598
PfeI	GAWTC	4 cut(s)	263, 292, 790, 1324
PfoI	TCCNGGA	1 cut(s)	604
PkrI	GCNGC	1 cut(s)	1216
PleI	GAGTC	1 cut(s)	1166
PpsI	GAGTC	1 cut(s)	1166
PscI	ACATGT	1 cut(s)	429
Psp124BI	GAGCTC	1 cut(s)	188
Psp6I	CCWGG	2 cut(s)	604, 1174
PspGI	CCWGG	2 cut(s)	604, 1174
PspN4I	GGNNCC	1 cut(s)	1173
PspPI	GGNCC	3 cut(s)	1022, 1108, 1171
PstI	CTGCAG	1 cut(s)	1102
PstNI	CAGNNNCTG	1 cut(s)	767
PsuI	RGATCY	2 cut(s)	17, 1129
RsaI	GTAC	2 cut(s)	231, 857
RsaNI	GTAC	2 cut(s)	230, 856
SacI	GAGCTC	1 cut(s)	188
SaqAI	TTAA	8 cut(s)	180, 347, 393, 407, 687, 785, 1059, 1163
SatI	GCNGC	1 cut(s)	1215
Sau96I	GGNCC	3 cut(s)	1022, 1108, 1171
SbfI	CCTGCAGG	1 cut(s)	1102
SchI	GAGTC	1 cut(s)	1167
ScrFI	CCNGG	2 cut(s)	606, 1176
SdaI	CCTGCAGG	1 cut(s)	1102
SduI	GDGCHC	2 cut(s)	188, 801
SfaNI	GCATC	4 cut(s)	264, 754, 999, 1287
SfcI	CTRYAG	1 cut(s)	1098
SfuI	TTCGAA	1 cut(s)	167
SinI	GGWCC	1 cut(s)	1022
SmlI	CTYRAG	4 cut(s)	305, 513, 1162, 1181
SmoI	CTYRAG	4 cut(s)	305, 513, 1162, 1181
Sse8387I	CCTGCAGG	1 cut(s)	1102
Sse9I	AATT	5 cut(s)	127, 212, 221, 394, 1072
SspI	AATATT	1 cut(s)	1195
SspMI	CTAG	4 cut(s)	54, 339, 582, 953
SstI	GAGCTC	1 cut(s)	188
StyD4I	CCNGG	2 cut(s)	604, 1174
StyI	CCWWGG	1 cut(s)	1047
TaaI	ACNGT	2 cut(s)	178, 206
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	4 cut(s)	167, 992, 1230, 1251
TasI	AATT	5 cut(s)	127, 212, 221, 394, 1072
TfiI	GAWTC	4 cut(s)	263, 292, 790, 1324
Tru1I	TTAA	8 cut(s)	180, 347, 393, 407, 687, 785, 1059, 1163
Tru9I	TTAA	8 cut(s)	180, 347, 393, 407, 687, 785, 1059, 1163
TseFI	GTSAC	1 cut(s)	1002
TseI	GCWGC	1 cut(s)	1214
Tsp45I	GTSAC	1 cut(s)	1002
TspDTI	ATGAA	5 cut(s)	305, 346, 836, 869, 1270
TspGWI	ACGGA	2 cut(s)	847, 990
Vha464I	CTTAAG	1 cut(s)	1162
VneI	GTGCAC	1 cut(s)	797
VpaK11BI	GGWCC	1 cut(s)	1022
XagI	CCTNNNNNAGG	2 cut(s)	348, 888
XbaI	TCTAGA	1 cut(s)	952
XceI	RCATGY	2 cut(s)	433, 812
XcmI	CCANNNNNNNNNTGG	1 cut(s)	645
XmnI	GAANNNNTTC	1 cut(s)	598
XspI	CTAG	4 cut(s)	54, 339, 582, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.