Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0013918

Physical Location & Seq

Genomic Coordinates Forward (+)

68045331 .. 68048969

Gene Structure 3639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG473900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGTCTCTGACTATAAAGCTTCACGTCACCACCTCCCACCTCAACCTCAACATCACCGCAATCAAAAGACCAACCCTCCCCAGGTTAAGAACCACCAAACCCATTTACCATTCTGACTCATTATTGTGCCTCGTGTATAAACAGAAACCCACAACAATGCATGAGCCGGCTCGATCCACCACCATCAAGAGCTCGCTGATCGAGCCGGACGGCGGGGCCTTGGTCGATCTCGTGGTGCCGGAAAGCGAGCGCGGGAGCAAGGCCCTCGAGGCCGAGTCGCTGCCGAAGGTGAGCCTGACCAAGATTGATCTGGAGTGGGTGCATGTGATCAGCGAGGGATGGGCTAGCCCTTTAAGAGGGTTCATGAGGGAGGACCAGTACTTGCAGAGCTTGCACTTCAATTCGTTGAGAGTCAAGGACGGGTCTGTGGTCAACATGTCGCTTCCCATTGTGTTGGCCATTGACGACGAGACCAGGGAGAGAATCGGGACGTCGCCGAATGTGGGGTTGGTTGGACCTAATGGAGATTTGATTGGGATATTAAGGAGCATTGAGATATACAAGCATAACAAAGAAGAAAGGATTGTGAGGACTTGGGGGTCAACTGCACCAGGATTGCCGTACGTTGAAGAGGCCATCACTCCAGCTGGAAACTGGCTTATTGGCGGAGATTTAGAAGTACTAGAGCGTATCAAATACAATGATGGGCTCGATAACTACAGACTCTCTCCTCAACAACTCCGAAACGAATTTGATAGGCGCCAGGCGGACGCAGTTTTTGCGTTTCAGTTGAGAAATCCTGTACATAATGGTCATGCTCTGTTGATGAATGATACACGCCGGCGACTCTTGGAAATGGGTTACAAGAATCCAATTCTACTGCTTCATCCTTTAGGAGGTTTCACAAAGCCGGATGATGTGCCCTTGGATGTTCGGATGGAGCAACATAGCAAGGTACTAGAGGATGGAATTCTCGACCCTGAAACTACCATTGTGGGCATATTCCCATCACCTATGCACTATGCAGGTCCAACTGAGGTACAATGGCATGCAAAAGCACGGATAAATGCAGGCGCAAATTTTTACATTGTGGGGCGTGATCCTGCTGGTATGGGACACCCAACAGAGAAGAGAGACTTGTATGACCCTGATCATGGGAAAAAGGTGTTGAGCATGGCACCTGGCCTTGAGAAGCTCAATATTTTGCCATTCAGGGTGGCTGCTTATGACACTGTGGAGAAGAAGATGGCATTTTTTGATCCTTCACGTGCAAAAGATTTCCTCTTCATCTCTGGGACCAAGGTAGGAACTGAATTTCAATTCAATGTCAGTAGTGTATCCTGCTTCATTGAAATTGCTATAGGTTTATCAGTAATGAACCATATTGGTTACGCATTTCCTGTTACTATAGTTTCACACCTCACTTGGTGTTTCAGATGCGGACTTATGCAAAGACCGGCGAAAACCCTCCTGATGGTTTTATGTGTCCCGGAGGATGGAAGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004020 GO:0004779 GO:0004781 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009970 GO:0009987 GO:0009991 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0070566 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko00230 ko00261 ko00450 ko00920 ko01100 ko01120 ko01130 map00230 map00261 map00450 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

ATP-sulfurylase PUA_2

Protein Analysis

502

Amino Acids

56.2

Weight (kDa)

7.0

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUA_2	PF14306	67 - 230	5e-42	PUA-like domain
ATP-sulfurylase	PF01747	239 - 436	3.1e-58	ATP-sulfurylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19920
fragaria_vesca	FvH4_2g38710
malus_domestica	MD08G1014800.v1.1 MD15G1014100.v1.1
prunus_persica	Prupe.1G367700_v2.0.a1
pyrus_communis	pycom08g01320 pycom15g01220
rosa_chinensis	RchiOBHm_Chr6g0302601
rosa_laevigata	RLG00000011158
rosa_multiflora	Rmu_sc0005455.1_g000010
rosa_roxburghii	Rroxscaffold_7G00165530
rosa_rugosa	Rorug06G0315200
rosa_samantha	Rh6AG428600 Rh6BG473900 Rh6CG440800 Rh6DG427600
rosa_wichuraiana	Rw6G037090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	598
AatII	GACGTC	1 cut(s)	494
AbsI	CCTCGAGG	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	1016
AccB1I	GGYRCC	3 cut(s)	235, 759, 1177
AccII	CGCG	1 cut(s)	252
AciI	CCGC	6 cut(s)	57, 213, 252, 666, 767, 1440
AclWI	GGATC	3 cut(s)	168, 1094, 1253
AcoI	YGGCCR	1 cut(s)	456
AcsI	RAATTY	4 cut(s)	749, 969, 1078, 1313
AcvI	CACGTG	1 cut(s)	1268
AcyI	GRCGYC	2 cut(s)	491, 760
AdeI	CACNNNGTG	1 cut(s)	1428
AfaI	GTAC	6 cut(s)	380, 623, 681, 804, 957, 1041
AfiI	CCNNNNNNNGG	8 cut(s)	81, 212, 356, 503, 896, 1154, 1474, 1496
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	5 cut(s)	400, 629, 1319, 1324, 1352
AjiI	CACGTC	1 cut(s)	25
AjnI	CCWGG	5 cut(s)	80, 473, 610, 762, 1180
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
AloI	GAACNNNNNNTCC	1 cut(s)	1487
AluBI	AGCT	5 cut(s)	19, 192, 390, 647, 1195
AluI	AGCT	5 cut(s)	19, 192, 390, 647, 1195
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	3 cut(s)	9, 464, 1128
AlwI	GGATC	3 cut(s)	168, 1094, 1253
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	6 cut(s)	216, 261, 270, 456, 633, 1183
ApeKI	GCWGC	2 cut(s)	280, 1220
ApoI	RAATTY	4 cut(s)	749, 969, 1078, 1313
ArsI	GACNNNNNNTTYG	2 cut(s)	761, 793
AspLEI	GCGC	3 cut(s)	252, 762, 1076
AspS9I	GGNCC	6 cut(s)	216, 262, 373, 515, 1028, 1296
AsuC2I	CCSGG	1 cut(s)	1490
AsuHPI	GGTGA	4 cut(s)	19, 46, 301, 1002
AsuNHI	GCTAGC	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	4 cut(s)	373, 515, 1028, 1296
BaeGI	GKGCMC	1 cut(s)	924
BalI	TGGCCA	1 cut(s)	458
BanI	GGYRCC	3 cut(s)	235, 759, 1177
BanII	GRGCYC	2 cut(s)	194, 711
BauI	CACGAG	2 cut(s)	131, 230
BbrPI	CACGTG	1 cut(s)	1268
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	267, 1207
BceAI	ACGGC	2 cut(s)	226, 604
BcgI	CGANNNNNNTGC	2 cut(s)	247, 281
BciT130I	CCWGG	5 cut(s)	82, 475, 612, 764, 1182
BciVI	GTATCC	1 cut(s)	1348
BclI	TGATCA	2 cut(s)	327, 1150
BcnI	CCSGG	1 cut(s)	1490
BcoDI	GTCTC	3 cut(s)	9, 464, 1128
BfaI	CTAG	4 cut(s)	345, 683, 959, 1507
BfmI	CTRYAG	3 cut(s)	718, 1359, 1407
BfoI	RGCGCY	1 cut(s)	763
BfuAI	ACCTGC	1 cut(s)	1016
BfuI	GTATCC	1 cut(s)	1348
BglI	GCCNNNNNGGC	1 cut(s)	269
BisI	GCNGC	2 cut(s)	281, 1221
BlsI	GCNGC	2 cut(s)	282, 1222
BmcAI	AGTACT	2 cut(s)	380, 681
Bme1390I	CCNGG	6 cut(s)	82, 475, 612, 764, 1182, 1490
Bme18I	GGWCC	4 cut(s)	373, 515, 1028, 1296
BmeT110I	CYCGRG	1 cut(s)	266
BmgBI	CACGTC	1 cut(s)	25
BmgT120I	GGNCC	6 cut(s)	216, 262, 373, 515, 1028, 1296
BmiI	GGNNCC	5 cut(s)	217, 237, 761, 1179, 1297
BmrFI	CCNGG	6 cut(s)	82, 475, 612, 764, 1182, 1490
BmsI	GCATC	1 cut(s)	1427
BmtI	GCTAGC	1 cut(s)	348
BpmI	CTGGAG	2 cut(s)	332, 627
BpuEI	CTTGAG	1 cut(s)	1208
BpuMI	CCSGG	1 cut(s)	1490
BsaAI	YACGTR	1 cut(s)	1268
BsaHI	GRCGYC	2 cut(s)	491, 760
BsaI	GGTCTC	1 cut(s)	464
BsaJI	CCNNGG	5 cut(s)	80, 219, 474, 924, 1299
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 90, 362, 392
Bsc4I	CCNNNNNNNGG	8 cut(s)	81, 212, 356, 503, 896, 1154, 1474, 1496
Bse118I	RCCGGY	3 cut(s)	166, 840, 1456
Bse1I	ACTGG	2 cut(s)	376, 659
BseBI	CCWGG	5 cut(s)	82, 475, 612, 764, 1182
BseDI	CCNNGG	5 cut(s)	80, 219, 474, 924, 1299
BseGI	GGATG	7 cut(s)	344, 886, 919, 934, 942, 970, 1501
BseLI	CCNNNNNNNGG	8 cut(s)	81, 212, 356, 503, 896, 1154, 1474, 1496
BseMII	CTCAG	1 cut(s)	1026
BseNI	ACTGG	2 cut(s)	376, 659
BseRI	GAGGAG	1 cut(s)	720
BseSI	GKGCMC	1 cut(s)	924
BseXI	GCAGC	2 cut(s)	267, 1207
BsgI	GTGCAG	1 cut(s)	591
Bsh1236I	CGCG	1 cut(s)	252
BshFI	GGCC	6 cut(s)	218, 263, 272, 458, 635, 1185
BshNI	GGYRCC	3 cut(s)	235, 759, 1177
BsiHKAI	GWGCWC	1 cut(s)	194
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	7 cut(s)	167, 206, 239, 841, 911, 1457, 1490
BsiWI	CGTACG	1 cut(s)	621
BslFI	GGGAC	4 cut(s)	502, 1128, 1309, 1472
BslI	CCNNNNNNNGG	8 cut(s)	81, 212, 356, 503, 896, 1154, 1474, 1496
BsmAI	GTCTC	3 cut(s)	9, 464, 1128
BsmFI	GGGAC	4 cut(s)	502, 1128, 1309, 1472
BsnI	GGCC	6 cut(s)	218, 263, 272, 458, 635, 1185
Bso31I	GGTCTC	1 cut(s)	464
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	3 cut(s)	194, 711, 924
Bsp1407I	TGTACA	1 cut(s)	802
Bsp143I	GATC	8 cut(s)	173, 198, 226, 307, 327, 1099, 1150, 1258
BspACI	CCGC	6 cut(s)	57, 213, 252, 666, 767, 1440
BspANI	GGCC	6 cut(s)	218, 263, 272, 458, 635, 1185
BspCNI	CTCAG	1 cut(s)	1027
BspFNI	CGCG	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	5 cut(s)	217, 237, 761, 1179, 1297
BspMI	ACCTGC	1 cut(s)	1016
BspOI	GCTAGC	1 cut(s)	348
BspPI	GGATC	3 cut(s)	168, 1094, 1253
BspT107I	GGYRCC	3 cut(s)	235, 759, 1177
BspTNI	GGTCTC	1 cut(s)	464
BsrFI	RCCGGY	3 cut(s)	166, 840, 1456
BsrGI	TGTACA	1 cut(s)	802
BsrI	ACTGG	2 cut(s)	376, 659
BssAI	RCCGGY	3 cut(s)	166, 840, 1456
BssECI	CCNNGG	5 cut(s)	80, 219, 474, 924, 1299
BssMI	GATC	8 cut(s)	173, 198, 226, 307, 327, 1099, 1150, 1258
BssNI	GRCGYC	2 cut(s)	491, 760
BssSI	CACGAG	2 cut(s)	131, 230
BssT1I	CCWWGG	3 cut(s)	219, 924, 1299
Bst2BI	CACGAG	2 cut(s)	131, 230
Bst2UI	CCWGG	5 cut(s)	82, 475, 612, 764, 1182
Bst4CI	ACNGT	1 cut(s)	1234
Bst6I	CTCTTC	3 cut(s)	624, 1124, 1289
BstACI	GRCGYC	2 cut(s)	491, 760
BstAPI	GCANNNNNTGC	2 cut(s)	391, 779
BstAUI	TGTACA	1 cut(s)	802
BstBAI	YACGTR	1 cut(s)	1268
BstC8I	GCNNGC	8 cut(s)	168, 194, 248, 346, 392, 842, 1050, 1072
BstDEI	CTNAG	1 cut(s)	1035
BstENI	CCTNNNNNAGG	2 cut(s)	354, 894
BstF5I	GGATG	7 cut(s)	344, 886, 919, 934, 942, 970, 1501
BstFNI	CGCG	1 cut(s)	252
BstH2I	RGCGCY	1 cut(s)	763
BstHHI	GCGC	3 cut(s)	252, 762, 1076
BstKTI	GATC	8 cut(s)	176, 201, 229, 310, 330, 1102, 1153, 1261
BstMAI	GTCTC	3 cut(s)	9, 464, 1128
BstMBI	GATC	8 cut(s)	173, 198, 226, 307, 327, 1099, 1150, 1258
BstMWI	GCNNNNNNNGC	4 cut(s)	202, 269, 391, 779
BstNI	CCWGG	5 cut(s)	82, 475, 612, 764, 1182
BstNSI	RCATGY	3 cut(s)	326, 439, 1052
BstSCI	CCNGG	6 cut(s)	80, 473, 610, 762, 1180, 1488
BstSFI	CTRYAG	3 cut(s)	718, 1359, 1407
BstSLI	GKGCMC	1 cut(s)	924
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	267, 1207
BstXI	CCANNNNNNTGG	1 cut(s)	454
BsuI	GTATCC	1 cut(s)	1348
BsuRI	GGCC	6 cut(s)	218, 263, 272, 458, 635, 1185
BtrI	CACGTC	1 cut(s)	25
BtsCI	GGATG	7 cut(s)	344, 886, 919, 934, 942, 970, 1501
BtsIMutI	CAGTG	1 cut(s)	1230
BveI	ACCTGC	1 cut(s)	1016
Cac8I	GCNNGC	8 cut(s)	168, 194, 248, 346, 392, 842, 1050, 1072
CciI	TCATGA	1 cut(s)	363
CfoI	GCGC	3 cut(s)	252, 762, 1076
Cfr10I	RCCGGY	3 cut(s)	166, 840, 1456
Cfr13I	GGNCC	6 cut(s)	216, 262, 373, 515, 1028, 1296
CseI	GACGC	1 cut(s)	779
Csp6I	GTAC	6 cut(s)	379, 622, 680, 803, 956, 1040
CviAII	CATG	8 cut(s)	161, 323, 364, 436, 815, 1049, 1154, 1174
CviQI	GTAC	6 cut(s)	379, 622, 680, 803, 956, 1040
DdeI	CTNAG	1 cut(s)	1035
DinI	GGCGCC	1 cut(s)	761
DpnI	GATC	8 cut(s)	175, 200, 228, 309, 329, 1101, 1152, 1260
DpnII	GATC	8 cut(s)	173, 198, 226, 307, 327, 1099, 1150, 1258
DraIII	CACNNNGTG	1 cut(s)	1428
DrdI	GACNNNNNNGTC	1 cut(s)	598
DseDI	GACNNNNNNGTC	1 cut(s)	598
EaeI	YGGCCR	1 cut(s)	456
Eam1104I	CTCTTC	3 cut(s)	624, 1124, 1289
EarI	CTCTTC	3 cut(s)	624, 1124, 1289
EciI	GGCGGA	2 cut(s)	681, 782
Ecl136II	GAGCTC	1 cut(s)	192
Eco130I	CCWWGG	3 cut(s)	219, 924, 1299
Eco24I	GRGCYC	2 cut(s)	194, 711
Eco31I	GGTCTC	1 cut(s)	464
Eco47I	GGWCC	4 cut(s)	373, 515, 1028, 1296
Eco53kI	GAGCTC	1 cut(s)	192
Eco72I	CACGTG	1 cut(s)	1268
Eco88I	CYCGRG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	192
EcoNI	CCTNNNNNAGG	2 cut(s)	354, 894
EcoO109I	RGGNCCY	2 cut(s)	216, 262
EcoRI	GAATTC	1 cut(s)	969
EcoRII	CCWGG	5 cut(s)	80, 473, 610, 762, 1180
EcoT14I	CCWWGG	3 cut(s)	219, 924, 1299
EcoT22I	ATGCAT	1 cut(s)	162
EcoT38I	GRGCYC	2 cut(s)	194, 711
EgeI	GGCGCC	1 cut(s)	761
EheI	GGCGCC	1 cut(s)	761
ErhI	CCWWGG	3 cut(s)	219, 924, 1299
FaeI	CATG	8 cut(s)	164, 326, 367, 439, 818, 1052, 1157, 1177
FalI	AAGNNNNNCTT	2 cut(s)	1121, 1153
FaqI	GGGAC	4 cut(s)	502, 1128, 1309, 1472
FatI	CATG	8 cut(s)	160, 322, 363, 435, 814, 1048, 1153, 1173
FauI	CCCGC	2 cut(s)	206, 245
FbaI	TGATCA	2 cut(s)	327, 1150
Fnu4HI	GCNGC	2 cut(s)	281, 1221
FokI	GGATG	6 cut(s)	351, 873, 926, 941, 949, 977
FriOI	GRGCYC	2 cut(s)	194, 711
Fsp4HI	GCNGC	2 cut(s)	281, 1221
FspBI	CTAG	4 cut(s)	345, 683, 959, 1507
GlaI	GCGC	3 cut(s)	251, 761, 1075
GluI	GCNGC	2 cut(s)	281, 1221
GsuI	CTGGAG	2 cut(s)	332, 627
HaeII	RGCGCY	1 cut(s)	763
HaeIII	GGCC	6 cut(s)	218, 263, 272, 458, 635, 1185
HapII	CCGG	7 cut(s)	167, 206, 239, 841, 911, 1457, 1490
HgaI	GACGC	1 cut(s)	779
HhaI	GCGC	3 cut(s)	252, 762, 1076
Hin1I	GRCGYC	2 cut(s)	491, 760
Hin1II	CATG	8 cut(s)	164, 326, 367, 439, 818, 1052, 1157, 1177
Hin6I	GCGC	3 cut(s)	250, 760, 1074
HinP1I	GCGC	3 cut(s)	250, 760, 1074
HincII	GTYRAC	2 cut(s)	433, 603
HindII	GTYRAC	2 cut(s)	433, 603
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	7 cut(s)	116, 275, 411, 483, 723, 846, 868
HpaII	CCGG	7 cut(s)	167, 206, 239, 841, 911, 1457, 1490
HphI	GGTGA	4 cut(s)	19, 46, 301, 1002
Hpy166II	GTNNAC	2 cut(s)	433, 603
Hpy188I	TCNGA	5 cut(s)	9, 115, 743, 936, 1436
Hpy188III	TCNNGA	6 cut(s)	187, 311, 364, 487, 974, 1471
Hpy8I	GTNNAC	2 cut(s)	433, 603
Hpy99I	CGWCG	2 cut(s)	470, 496
HpyAV	CCTTC	3 cut(s)	280, 1272, 1494
HpyCH4III	ACNGT	1 cut(s)	1234
HpyCH4IV	ACGT	4 cut(s)	24, 491, 624, 1267
HpyF10VI	GCNNNNNNNGC	4 cut(s)	202, 269, 391, 779
HpyF3I	CTNAG	1 cut(s)	1035
HpySE526I	ACGT	4 cut(s)	24, 491, 624, 1267
Hsp92I	GRCGYC	2 cut(s)	491, 760
Hsp92II	CATG	8 cut(s)	164, 326, 367, 439, 818, 1052, 1157, 1177
HspAI	GCGC	3 cut(s)	250, 760, 1074
KasI	GGCGCC	1 cut(s)	759
KroI	GCCGGC	2 cut(s)	166, 840
KroNI	GCCGGC	2 cut(s)	168, 842
Ksp22I	TGATCA	2 cut(s)	327, 1150
Kzo9I	GATC	8 cut(s)	173, 198, 226, 307, 327, 1099, 1150, 1258
LmnI	GCTCC	3 cut(s)	255, 546, 940
Lsp1109I	GCAGC	2 cut(s)	267, 1207
LweI	GCATC	1 cut(s)	1427
MaeI	CTAG	4 cut(s)	345, 683, 959, 1507
MaeII	ACGT	4 cut(s)	24, 491, 624, 1267
MaeIII	GTNAC	4 cut(s)	25, 860, 1388, 1402
MalI	GATC	8 cut(s)	175, 200, 228, 309, 329, 1101, 1152, 1260
MboI	GATC	8 cut(s)	173, 198, 226, 307, 327, 1099, 1150, 1258
MboII	GAAGA	6 cut(s)	587, 641, 1141, 1252, 1255, 1276
MhlI	GDGCHC	3 cut(s)	194, 711, 924
MlsI	TGGCCA	1 cut(s)	458
MluCI	AATT	8 cut(s)	400, 749, 873, 969, 1078, 1313, 1319, 1353
MluNI	TGGCCA	1 cut(s)	458
Mly113I	GGCGCC	1 cut(s)	760
MlyI	GAGTC	5 cut(s)	110, 284, 420, 717, 840
MmeI	TCCRAC	2 cut(s)	493, 1055
Mox20I	TGGCCA	1 cut(s)	458
Mph1103I	ATGCAT	1 cut(s)	162
MreI	CGCCGGCG	1 cut(s)	840
MroNI	GCCGGC	2 cut(s)	166, 840
MscI	TGGCCA	1 cut(s)	458
MseI	TTAA	3 cut(s)	86, 353, 542
MslI	CAYNNNNRTG	2 cut(s)	124, 155
Msp20I	TGGCCA	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	7 cut(s)	167, 206, 239, 841, 911, 1457, 1490
MspR9I	CCNGG	6 cut(s)	82, 475, 612, 764, 1182, 1490
MvaI	CCWGG	5 cut(s)	82, 475, 612, 764, 1182
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	4 cut(s)	202, 269, 391, 779
NaeI	GCCGGC	2 cut(s)	168, 842
NarI	GGCGCC	1 cut(s)	760
NciI	CCSGG	1 cut(s)	1490
NdeII	GATC	8 cut(s)	173, 198, 226, 307, 327, 1099, 1150, 1258
NgoMIV	GCCGGC	2 cut(s)	166, 840
NheI	GCTAGC	1 cut(s)	344
NlaIII	CATG	8 cut(s)	164, 326, 367, 439, 818, 1052, 1157, 1177
NlaIV	GGNNCC	5 cut(s)	217, 237, 761, 1179, 1297
NmeAIII	GCCGAG	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	25
NsiI	ATGCAT	1 cut(s)	162
NspI	RCATGY	3 cut(s)	326, 439, 1052
PaeI	GCATGC	1 cut(s)	1052
PaeR7I	CTCGAG	1 cut(s)	266
PagI	TCATGA	1 cut(s)	363
PciI	ACATGT	1 cut(s)	435
PdiI	GCCGGC	2 cut(s)	168, 842
PfeI	GAWTC	2 cut(s)	483, 868
Pfl23II	CGTACG	1 cut(s)	621
PfoI	TCCNGGA	1 cut(s)	1488
PkrI	GCNGC	2 cut(s)	282, 1222
PleI	GAGTC	5 cut(s)	110, 283, 419, 717, 840
PluTI	GGCGCC	1 cut(s)	763
PmaCI	CACGTG	1 cut(s)	1268
PmlI	CACGTG	1 cut(s)	1268
PpsI	GAGTC	5 cut(s)	110, 283, 419, 717, 840
Ppu21I	YACGTR	1 cut(s)	1268
PscI	ACATGT	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	194
Psp6I	CCWGG	5 cut(s)	80, 473, 610, 762, 1180
PspCI	CACGTG	1 cut(s)	1268
PspGI	CCWGG	5 cut(s)	80, 473, 610, 762, 1180
PspLI	CGTACG	1 cut(s)	621
PspN4I	GGNNCC	5 cut(s)	217, 237, 761, 1179, 1297
PspPI	GGNCC	6 cut(s)	216, 262, 373, 515, 1028, 1296
PspXI	VCTCGAGB	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	6 cut(s)	380, 623, 681, 804, 957, 1041
RsaNI	GTAC	6 cut(s)	379, 622, 680, 803, 956, 1040
RseI	CAYNNNNRTG	2 cut(s)	124, 155
SacI	GAGCTC	1 cut(s)	194
SaqAI	TTAA	3 cut(s)	86, 353, 542
SatI	GCNGC	2 cut(s)	281, 1221
Sau3AI	GATC	8 cut(s)	173, 198, 226, 307, 327, 1099, 1150, 1258
Sau96I	GGNCC	6 cut(s)	216, 262, 373, 515, 1028, 1296
ScaI	AGTACT	2 cut(s)	380, 681
SchI	GAGTC	5 cut(s)	110, 284, 420, 717, 840
ScrFI	CCNGG	6 cut(s)	82, 475, 612, 764, 1182, 1490
SduI	GDGCHC	3 cut(s)	194, 711, 924
SfaNI	GCATC	1 cut(s)	1427
SfcI	CTRYAG	3 cut(s)	718, 1359, 1407
SfiI	GGCCNNNNNGGCC	1 cut(s)	269
SfoI	GGCGCC	1 cut(s)	761
Sfr274I	CTCGAG	1 cut(s)	266
SgrAI	CRCCGGYG	1 cut(s)	840
SinI	GGWCC	4 cut(s)	373, 515, 1028, 1296
SlaI	CTCGAG	1 cut(s)	266
SmiMI	CAYNNNNRTG	2 cut(s)	124, 155
SmlI	CTYRAG	2 cut(s)	266, 1187
SmoI	CTYRAG	2 cut(s)	266, 1187
SphI	GCATGC	1 cut(s)	1052
Sse9I	AATT	8 cut(s)	400, 749, 873, 969, 1078, 1313, 1319, 1353
SsiI	CCGC	6 cut(s)	57, 213, 252, 666, 767, 1440
SspDI	GGCGCC	1 cut(s)	759
SspI	AATATT	1 cut(s)	1201
SspMI	CTAG	4 cut(s)	345, 683, 959, 1507
SstI	GAGCTC	1 cut(s)	194
StyD4I	CCNGG	6 cut(s)	80, 473, 610, 762, 1180, 1488
StyI	CCWWGG	3 cut(s)	219, 924, 1299
TaaI	ACNGT	1 cut(s)	1234
TaiI	ACGT	4 cut(s)	27, 494, 627, 1270
TaqI	TCGA	6 cut(s)	172, 201, 225, 267, 711, 975
TasI	AATT	8 cut(s)	400, 749, 873, 969, 1078, 1313, 1319, 1353
TatI	WGTACW	3 cut(s)	378, 679, 802
TfiI	GAWTC	2 cut(s)	483, 868
Tru1I	TTAA	3 cut(s)	86, 353, 542
Tru9I	TTAA	3 cut(s)	86, 353, 542
TscAI	CASTG	1 cut(s)	1237
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	2 cut(s)	280, 1220
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	6 cut(s)	352, 842, 875, 1276, 1336, 1391
TspGWI	ACGGA	1 cut(s)	1075
TspRI	CASTG	1 cut(s)	1237
VpaK11BI	GGWCC	4 cut(s)	373, 515, 1028, 1296
XagI	CCTNNNNNAGG	2 cut(s)	354, 894
XapI	RAATTY	4 cut(s)	749, 969, 1078, 1313
XceI	RCATGY	3 cut(s)	326, 439, 1052
XcmI	CCANNNNNNNNNTGG	2 cut(s)	307, 651
XhoI	CTCGAG	1 cut(s)	266
XspI	CTAG	4 cut(s)	345, 683, 959, 1507
ZraI	GACGTC	1 cut(s)	492
ZrmI	AGTACT	2 cut(s)	380, 681
Zsp2I	ATGCAT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.