AT1G19970

ER lumen protein retaining receptor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015838
Physical Location & Seq
Reverse (-)
6931012 .. 6932826
1815 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19970.1

Sequence Viewer

Length: 819 bp
ATGAAGGCGGAGAAGAATCCGATTCAGTCCGTAATGGCGTGGATTCGCCGGCAACCGCCAAAAGTAAAGGCTTTTCTTGGCGTGGTAACGGCAATGACGGTGCTTGTTCTCCTCAGGGTGATTGTTCATGAACACGACAATCTTTTCGTCGCTTCTGAGGCTGTACATGCCGTTGGTATCGCTGTTCTTATCTATAAGCTCACAAAGGAGAAGACTTGTGCTGGGATATCTCTCAAGACACAGGAGCTAACGGCTTTGTTTCTGGCTGTGAGATTGTATTGTAGCTTTGTAATGGAGTTTGATCTTCATACATTTCTTGATTCAGCTACTTTGGTGACCACTCTTTGGGTCGTTTATATGATCCGTTTCAAGCTTAGACCTACTTATATGGAAGATAAAGACAATTTTGCTATCTATTTCGTCGTAATCCCATGTGCTGTTCTGTCTTTCTTCATTCATCCATCAACACGTCACCACATCATAAACAGGATTTCTTGGGCATTCTGTGTTTATCTTGAAGCTGTTTCAGTTCTTCCTCAATTAAGAGTCATGCAGAACACTAAGATTGTGGAACCATTCACTGCACATTACGTATTTGCTTTGGGAATTGCTAGGTTCTTGAGTTGTGCACACTGGATCCTTCAGGTGTTGGATACGCGAGGGCGGTTACTGACTGCATTAGGGTCTGGACTGTGGCCTGTAATGGTCCTCATCTCTGAAATAGTCCAAACCTTCATTCTTGCAGATTTCTGCTATTACTATGTTCAGAGTTTAATGGGTGGACAGCTCGTTCTTCGACTCCCGTCTGGTGTGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05110 map05110
Pfam Domains
Protein Families
ER_lumen_recept

Protein Analysis

272

Amino Acids

30.9

Weight (kDa)

9.14

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ER_lumen_recept PF00810 72 - 215 1.5e-45 ER lumen protein retaining receptor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015838)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19970 AT1G19970 AT3G25160
fragaria_vesca FvH4_2g18430
malus_domestica MD05G1170200.v1.1
prunus_persica Prupe.8G197400_v2.0.a1
pyrus_communis pycom05g15740
rosa_chinensis RchiOBHm_Chr6g0283911
rosa_laevigata RLG00000012787
rosa_rugosa Rorug06G0158400
rosa_samantha Rh6AG271400 Rh6BG272600 Rh6CG273800 Rh6DG266700
rosa_wichuraiana Rw6G023410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 345
AccII CGCG 1 cut(s) 658
AciI CCGC 3 cut(s) 8, 56, 664
AclWI GGATC 3 cut(s) 355, 631, 644
AcuI CTGAAG 1 cut(s) 626
AfaI GTAC 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 345
AflIII ACRYGT 1 cut(s) 467
AgsI TTSAA 2 cut(s) 370, 518
AjiI CACGTC 1 cut(s) 470
AjuI GAANNNNNNNTTGG 2 cut(s) 720, 752
AloI GAACNNNNNNTCC 2 cut(s) 774, 806
AluBI AGCT 7 cut(s) 199, 247, 285, 326, 373, 521, 787
AluI AGCT 7 cut(s) 199, 247, 285, 326, 373, 521, 787
Alw21I GWGCWC 1 cut(s) 631
Alw44I GTGCAC 1 cut(s) 627
AlwI GGATC 3 cut(s) 355, 631, 644
AoxI GGCC 1 cut(s) 695
ApaLI GTGCAC 1 cut(s) 627
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AspS9I GGNCC 1 cut(s) 706
AsuHPI GGTGA 3 cut(s) 130, 346, 464
AvaII GGWCC 1 cut(s) 706
AxyI CCTNAGG 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 631
BamHI GGATCC 1 cut(s) 636
BbsI GAAGAC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 631
BccI CCATC 1 cut(s) 469
BceAI ACGGC 3 cut(s) 105, 155, 267
BciVI GTATCC 1 cut(s) 646
BfaI CTAG 1 cut(s) 612
BfuI GTATCC 1 cut(s) 646
Bme18I GGWCC 1 cut(s) 706
BmgBI CACGTC 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 706
BmiI GGNNCC 2 cut(s) 573, 638
BoxI GACNNNNGTC 1 cut(s) 802
BpiI GAAGAC 1 cut(s) 218
BpuEI CTTGAG 2 cut(s) 218, 640
BsaAI YACGTR 1 cut(s) 592
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse118I RCCGGY 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 638
Bse21I CCTNAGG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 99
BseGI GGATG 1 cut(s) 457
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 2 cut(s) 127, 147
BseNI ACTGG 1 cut(s) 638
BseRI GAGGAG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 631
BseYI CCCAGC 1 cut(s) 221
BsgI GTGCAG 1 cut(s) 567
Bsh1236I CGCG 1 cut(s) 658
BshFI GGCC 1 cut(s) 697
BsiHKAI GWGCWC 1 cut(s) 631
BsiSI CCGG 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 345
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 1 cut(s) 697
Bsp1286I GDGCHC 1 cut(s) 631
Bsp1407I TGTACA 1 cut(s) 163
Bsp143I GATC 3 cut(s) 301, 360, 636
BspACI CCGC 3 cut(s) 8, 56, 664
BspANI GGCC 1 cut(s) 697
BspCNI CTCAG 2 cut(s) 126, 148
BspFNI CGCG 1 cut(s) 658
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 573, 638
BspPI GGATC 3 cut(s) 355, 631, 644
BsrDI GCAATG 1 cut(s) 99
BsrFI RCCGGY 1 cut(s) 48
BsrGI TGTACA 1 cut(s) 163
BsrI ACTGG 1 cut(s) 638
BssAI RCCGGY 1 cut(s) 48
BssMI GATC 3 cut(s) 301, 360, 636
Bst4CI ACNGT 2 cut(s) 100, 693
BstAUI TGTACA 1 cut(s) 163
BstBAI YACGTR 1 cut(s) 592
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 4 cut(s) 113, 156, 374, 561
BstEII GGTNACC 1 cut(s) 334
BstF5I GGATG 1 cut(s) 457
BstFNI CGCG 1 cut(s) 658
BstKTI GATC 3 cut(s) 304, 363, 639
BstMBI GATC 3 cut(s) 301, 360, 636
BstMWI GCNNNNNNNGC 2 cut(s) 158, 167
BstNSI RCATGY 1 cut(s) 170
BstPAI GACNNNNGTC 1 cut(s) 802
BstPI GGTNACC 1 cut(s) 334
BstSLI GKGCMC 1 cut(s) 631
BstSNI TACGTA 1 cut(s) 592
BstUI CGCG 1 cut(s) 658
BstV2I GAAGAC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 636
BstYI RGATCY 1 cut(s) 636
Bsu36I CCTNAGG 1 cut(s) 113
BsuI GTATCC 1 cut(s) 646
BsuRI GGCC 1 cut(s) 697
BtrI CACGTC 1 cut(s) 470
BtsCI GGATG 1 cut(s) 457
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 2 cut(s) 579, 631
Cac8I GCNNGC 1 cut(s) 50
CciI TCATGA 1 cut(s) 127
Cfr10I RCCGGY 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 706
Csp6I GTAC 1 cut(s) 164
CviAII CATG 4 cut(s) 128, 167, 432, 550
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 4 cut(s) 113, 156, 374, 561
DpnI GATC 3 cut(s) 303, 362, 638
DpnII GATC 3 cut(s) 301, 360, 636
EciI GGCGGA 1 cut(s) 23
Eco105I TACGTA 1 cut(s) 592
Eco32I GATATC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 706
Eco57I CTGAAG 1 cut(s) 626
Eco81I CCTNAGG 1 cut(s) 113
Eco91I GGTNACC 1 cut(s) 334
EcoO65I GGTNACC 1 cut(s) 334
EcoRV GATATC 1 cut(s) 228
FaeI CATG 4 cut(s) 131, 170, 435, 553
FatI CATG 4 cut(s) 127, 166, 431, 549
FokI GGATG 1 cut(s) 444
FspBI CTAG 1 cut(s) 612
GsaI CCCAGC 1 cut(s) 225
HaeIII GGCC 1 cut(s) 697
HapII CCGG 1 cut(s) 49
Hin1II CATG 4 cut(s) 131, 170, 435, 553
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 6 cut(s) 16, 22, 43, 320, 546, 798
HpaII CCGG 1 cut(s) 49
HphI GGTGA 3 cut(s) 130, 346, 464
Hpy166II GTNNAC 2 cut(s) 629, 782
Hpy188I TCNGA 4 cut(s) 21, 157, 718, 768
Hpy188III TCNNGA 6 cut(s) 128, 235, 317, 515, 619, 687
Hpy8I GTNNAC 2 cut(s) 629, 782
Hpy99I CGWCG 2 cut(s) 152, 425
HpyAV CCTTC 2 cut(s) 650, 742
HpyCH4III ACNGT 2 cut(s) 100, 693
HpyCH4IV ACGT 2 cut(s) 469, 591
HpyCH4V TGCA 5 cut(s) 553, 584, 629, 677, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 167
HpyF3I CTNAG 4 cut(s) 113, 156, 374, 561
HpySE526I ACGT 2 cut(s) 469, 591
Hsp92II CATG 4 cut(s) 131, 170, 435, 553
KroI GCCGGC 1 cut(s) 48
KroNI GCCGGC 1 cut(s) 50
Kzo9I GATC 3 cut(s) 301, 360, 636
LmnI GCTCC 1 cut(s) 244
MaeI CTAG 1 cut(s) 612
MaeII ACGT 2 cut(s) 469, 591
MaeIII GTNAC 4 cut(s) 85, 334, 470, 666
MalI GATC 3 cut(s) 303, 362, 638
MboI GATC 3 cut(s) 301, 360, 636
MboII GAAGA 7 cut(s) 25, 223, 296, 404, 442, 524, 785
MflI RGATCY 1 cut(s) 636
MhlI GDGCHC 1 cut(s) 631
MluCI AATT 3 cut(s) 403, 539, 606
MlyI GAGTC 2 cut(s) 555, 792
MmeI TCCRAC 1 cut(s) 630
MnlI CCTC 5 cut(s) 122, 151, 546, 653, 719
MroNI GCCGGC 1 cut(s) 48
MseI TTAA 2 cut(s) 542, 773
MspI CCGG 1 cut(s) 49
Mva1269I GAATGC 1 cut(s) 500
MvnI CGCG 1 cut(s) 658
MwoI GCNNNNNNNGC 2 cut(s) 158, 167
NaeI GCCGGC 1 cut(s) 50
NdeII GATC 3 cut(s) 301, 360, 636
NgoMIV GCCGGC 1 cut(s) 48
NlaIII CATG 4 cut(s) 131, 170, 435, 553
NlaIV GGNNCC 2 cut(s) 573, 638
NmuCI GTSAC 2 cut(s) 334, 470
NspI RCATGY 1 cut(s) 170
PagI TCATGA 1 cut(s) 127
PctI GAATGC 1 cut(s) 500
PdiI GCCGGC 1 cut(s) 50
PfeI GAWTC 4 cut(s) 16, 22, 43, 320
PflMI CCANNNNNTGG 1 cut(s) 345
PleI GAGTC 2 cut(s) 554, 792
PpsI GAGTC 2 cut(s) 554, 792
Ppu21I YACGTR 1 cut(s) 592
PshAI GACNNNNGTC 1 cut(s) 802
PspEI GGTNACC 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 221
PspN4I GGNNCC 2 cut(s) 573, 638
PspPI GGNCC 1 cut(s) 706
PsuI RGATCY 1 cut(s) 636
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 542, 773
Sau3AI GATC 3 cut(s) 301, 360, 636
Sau96I GGNCC 1 cut(s) 706
SchI GAGTC 2 cut(s) 555, 792
SduI GDGCHC 1 cut(s) 631
SinI GGWCC 1 cut(s) 706
SmlI CTYRAG 2 cut(s) 233, 619
SmoI CTYRAG 2 cut(s) 233, 619
SnaBI TACGTA 1 cut(s) 592
Sse9I AATT 3 cut(s) 403, 539, 606
SsiI CCGC 3 cut(s) 8, 56, 664
SspMI CTAG 1 cut(s) 612
TaaI ACNGT 2 cut(s) 100, 693
TaiI ACGT 2 cut(s) 472, 594
TaqI TCGA 1 cut(s) 796
TasI AATT 3 cut(s) 403, 539, 606
TatI WGTACW 1 cut(s) 163
TfiI GAWTC 4 cut(s) 16, 22, 43, 320
Tru1I TTAA 2 cut(s) 542, 773
Tru9I TTAA 2 cut(s) 542, 773
TscAI CASTG 2 cut(s) 586, 638
TseFI GTSAC 2 cut(s) 334, 470
Tsp45I GTSAC 2 cut(s) 334, 470
TspDTI ATGAA 7 cut(s) 17, 116, 144, 296, 442, 446, 724
TspGWI ACGGA 2 cut(s) 19, 353
TspRI CASTG 2 cut(s) 586, 638
Van91I CCANNNNNTGG 1 cut(s) 345
VneI GTGCAC 1 cut(s) 627
VpaK11BI GGWCC 1 cut(s) 706
XceI RCATGY 1 cut(s) 170
XspI CTAG 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.