Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0015838

Physical Location & Seq

Genomic Coordinates Forward (+)

18856356 .. 18859308

Gene Structure 2953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G197400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGGGAGGAGGAGGAGCTCGCCTGTGAATGTGCTGTTTCAATGGGTGAGGAGCCAGTCAATGAAAGTCAAGGTCTTTCTTGGAGCCTTGCTTGCTCTCTGTGCTTTGCTTGCATTGAGGTTTTGGGTGAGGAATCACCACTACTTCTTCATTGCCTCTGAGGTTGTGCATGTGCTTGGGATCATCGTCCTCATCTACAAGCTCACCACCCAAAAGACTTGCTCTGGTCTTTCCCTAAAGACTCAGGAACTCACAGCTCTGTTCCTAGCAGTAAGGTTGTTCTGTAGTACAATGATGGAGGGTGACATTCACACTGTGCTAGATTTTCTTACTCTCGTGGCAACGGCGTGGGTCATATATATGATACGGTTTAAATTGAAGTCGACCTACATAAAGGAACTGGACAATTTTCGCTTATATTACCTGGTGGTGCCTTCTGCTGTCCTTGGTGTGCTCGTCCACCCCTACACGCTAAATTATCGCTTCTGTCGAATCCTTTGGGCATTTGGTGCAAACATGGAGGCTGTTTCAGTTCTGCCTCAACTTCGGTTGATGCAGAATGCAAAGATGATTGAACCATTTACTTCCCATTATGTATTCGCATTGGGGATTTCAAGATTTTTTGCTTGTGCTCATTGGATTATTCAGATCTATGAGACTAACGGGACATATATATACTACATTGGGAGTGGATATTTCTGGCTTTTGTCAGCTTTCCTCGGTGAGATGGTTCAAACATTCATCTTAGCTGACTTTTGTTACTACTACATAAAGAGTAAAATGGCAGGGCAGCTGATAATGAGGATGCCTCCTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

273

Amino Acids

31.52

Weight (kDa)

9.55

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19970 AT1G19970 AT3G25160
fragaria_vesca	FvH4_2g18430
malus_domestica	MD05G1170200.v1.1
prunus_persica	Prupe.8G197400_v2.0.a1
pyrus_communis	pycom05g15740
rosa_chinensis	RchiOBHm_Chr6g0283911
rosa_laevigata	RLG00000012787
rosa_rugosa	Rorug06G0158400
rosa_samantha	Rh6AG271400 Rh6BG272600 Rh6CG273800 Rh6DG266700
rosa_wichuraiana	Rw6G023410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	430
AccI	GTMKAC	1 cut(s)	383
AclWI	GGATC	1 cut(s)	188
AdeI	CACNNNGTG	1 cut(s)	316
AfaI	GTAC	1 cut(s)	289
AgsI	TTSAA	5 cut(s)	41, 379, 575, 615, 734
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	6 cut(s)	18, 202, 257, 713, 749, 793
AluI	AGCT	6 cut(s)	18, 202, 257, 713, 749, 793
Alw21I	GWGCWC	3 cut(s)	20, 456, 634
Alw26I	GTCTC	1 cut(s)	650
AlwI	GGATC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	790
AsuHPI	GGTGA	6 cut(s)	58, 128, 139, 196, 314, 734
BanI	GGYRCC	1 cut(s)	430
BanII	GRGCYC	1 cut(s)	20
BarI	GAAGNNNNNNTAC	2 cut(s)	371, 403
BauI	CACGAG	1 cut(s)	335
Bbv12I	GWGCWC	3 cut(s)	20, 456, 634
BbvI	GCAGC	1 cut(s)	802
BccI	CCATC	2 cut(s)	289, 721
BceAI	ACGGC	1 cut(s)	360
BciT130I	CCWGG	1 cut(s)	425
BcoDI	GTCTC	1 cut(s)	650
BfaI	CTAG	3 cut(s)	266, 320, 817
BfmI	CTRYAG	1 cut(s)	283
BglII	AGATCT	1 cut(s)	648
BisI	GCNGC	1 cut(s)	791
BlsI	GCNGC	1 cut(s)	792
Bme1390I	CCNGG	1 cut(s)	425
BmiI	GGNNCC	3 cut(s)	53, 85, 432
BmrFI	CCNGG	1 cut(s)	425
BmsI	GCATC	2 cut(s)	543, 795
BplI	GAGNNNNNCTC	1 cut(s)	793
BsaJI	CCNNGG	2 cut(s)	445, 718
Bse1I	ACTGG	2 cut(s)	55, 405
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	425
BseDI	CCNNGG	2 cut(s)	445, 718
BseGI	GGATG	1 cut(s)	810
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	2 cut(s)	150, 257
BseNI	ACTGG	2 cut(s)	55, 405
BseRI	GAGGAG	4 cut(s)	22, 25, 28, 64
BseXI	GCAGC	1 cut(s)	802
BshNI	GGYRCC	1 cut(s)	430
BsiHKAI	GWGCWC	3 cut(s)	20, 456, 634
BslFI	GGGAC	1 cut(s)	679
BsmAI	GTCTC	1 cut(s)	650
BsmFI	GGGAC	1 cut(s)	679
BsmI	GAATGC	1 cut(s)	565
Bsp1286I	GDGCHC	3 cut(s)	20, 456, 634
Bsp143I	GATC	2 cut(s)	180, 648
BspCNI	CTCAG	2 cut(s)	151, 256
BspLI	GGNNCC	3 cut(s)	53, 85, 432
BspPI	GGATC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	55, 405
BssECI	CCNNGG	2 cut(s)	445, 718
BssMI	GATC	2 cut(s)	180, 648
BssSI	CACGAG	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	445
Bst2BI	CACGAG	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	2 cut(s)	316, 369
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	3 cut(s)	20, 93, 111
BstDEI	CTNAG	3 cut(s)	159, 243, 745
BstF5I	GGATG	1 cut(s)	810
BstKTI	GATC	2 cut(s)	183, 651
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	2 cut(s)	180, 648
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 101, 110, 509
BstNI	CCWGG	1 cut(s)	425
BstNSI	RCATGY	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	423
BstSFI	CTRYAG	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	802
BstX2I	RGATCY	1 cut(s)	648
BstYI	RGATCY	1 cut(s)	648
BtsCI	GGATG	1 cut(s)	810
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	3 cut(s)	20, 93, 111
CsiI	ACCWGGT	1 cut(s)	423
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	2 cut(s)	170, 517
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	3 cut(s)	159, 243, 745
DpnI	GATC	2 cut(s)	182, 650
DpnII	GATC	2 cut(s)	180, 648
DraI	TTTAAA	1 cut(s)	373
DraIII	CACNNNGTG	1 cut(s)	316
Ecl136II	GAGCTC	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	18
EcoICRI	GAGCTC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	423
EcoT14I	CCWWGG	1 cut(s)	445
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	2 cut(s)	173, 520
FaqI	GGGAC	1 cut(s)	679
FatI	CATG	2 cut(s)	169, 516
FblI	GTMKAC	1 cut(s)	383
Fnu4HI	GCNGC	1 cut(s)	791
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	791
FspBI	CTAG	3 cut(s)	266, 320, 817
GluI	GCNGC	1 cut(s)	791
Hin1II	CATG	2 cut(s)	173, 520
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HinfI	GANTC	3 cut(s)	133, 241, 492
HphI	GGTGA	6 cut(s)	58, 128, 139, 196, 314, 734
Hpy166II	GTNNAC	2 cut(s)	384, 460
Hpy188I	TCNGA	2 cut(s)	160, 648
Hpy188III	TCNNGA	2 cut(s)	245, 615
Hpy8I	GTNNAC	2 cut(s)	384, 460
HpyAV	CCTTC	1 cut(s)	444
HpyCH4III	ACNGT	2 cut(s)	316, 369
HpyCH4V	TGCA	5 cut(s)	113, 169, 512, 556, 563
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 101, 110, 509
HpyF3I	CTNAG	3 cut(s)	159, 243, 745
Hsp92II	CATG	2 cut(s)	173, 520
Kzo9I	GATC	2 cut(s)	180, 648
LmnI	GCTCC	3 cut(s)	15, 51, 83
LpnPI	CCDG	9 cut(s)	36, 68, 210, 230, 386, 410, 437, 685, 771
Lsp1109I	GCAGC	1 cut(s)	802
LweI	GCATC	2 cut(s)	543, 795
MabI	ACCWGGT	1 cut(s)	423
MaeI	CTAG	3 cut(s)	266, 320, 817
MaeIII	GTNAC	2 cut(s)	302, 758
MalI	GATC	2 cut(s)	182, 650
MboI	GATC	2 cut(s)	180, 648
MboII	GAAGA	1 cut(s)	139
MflI	RGATCY	1 cut(s)	648
MhlI	GDGCHC	3 cut(s)	20, 456, 634
MluCI	AATT	3 cut(s)	374, 406, 475
MlyI	GAGTC	1 cut(s)	235
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	793
MspR9I	CCNGG	1 cut(s)	425
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	425
MwoI	GCNNNNNNNGC	4 cut(s)	92, 101, 110, 509
NdeII	GATC	2 cut(s)	180, 648
NlaIII	CATG	2 cut(s)	173, 520
NlaIV	GGNNCC	3 cut(s)	53, 85, 432
NmuCI	GTSAC	1 cut(s)	302
NspI	RCATGY	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	487
PctI	GAATGC	1 cut(s)	565
PfeI	GAWTC	2 cut(s)	133, 492
PkrI	GCNGC	1 cut(s)	792
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
Psp124BI	GAGCTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	3 cut(s)	53, 85, 432
PsuI	RGATCY	1 cut(s)	648
PvuII	CAGCTG	1 cut(s)	793
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
RseI	CAYNNNNRTG	1 cut(s)	359
SacI	GAGCTC	1 cut(s)	20
SalI	GTCGAC	1 cut(s)	382
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	1 cut(s)	791
Sau3AI	GATC	2 cut(s)	180, 648
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	425
SduI	GDGCHC	3 cut(s)	20, 456, 634
SexAI	ACCWGGT	1 cut(s)	423
SfaNI	GCATC	2 cut(s)	543, 795
SfcI	CTRYAG	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	359
Sse9I	AATT	3 cut(s)	374, 406, 475
SspMI	CTAG	3 cut(s)	266, 320, 817
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	423
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	2 cut(s)	316, 369
TaqI	TCGA	2 cut(s)	383, 490
TasI	AATT	3 cut(s)	374, 406, 475
TatI	WGTACW	1 cut(s)	287
TfiI	GAWTC	2 cut(s)	133, 492
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	1 cut(s)	790
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	3 cut(s)	77, 139, 730
TspRI	CASTG	1 cut(s)	319
XceI	RCATGY	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	383
XspI	CTAG	3 cut(s)	266, 320, 817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.