RchiOBHm_Chr6g0283911

ER lumen protein retaining

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0015838
Physical Location & Seq
Forward (+)
47154728 .. 47157882
3155 bp
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UTR
Exon/CDS
Intron
PRQ25459

Sequence Viewer

Length: 816 bp
ATGGGGAGGAGGAGGAACGCTTCAGTGAATGTTCTGTTTCAATGGGTGAGGAGGCAGTCAATGAAAGTCAAGATCTTTCTTGGAGCCTTTCTTGCGCTGTGTGGTTTGGTGGCACTGAAGTTTTGGGTCAAGAATCATGACCATTTTTTCATTGCCTCTGAAGCCATTCATTTTCTGGGGATCATCGTCCTCATATACAAGCTCACAACCCAAAAGACCTGCTCTGGTCTTTCCCTAAAGACTCAAGAACTCACAGCTGCCTTTGTAGCAGTAAGATTGGTTTGCAGTACCATCATGGAGGCTGATGTGCACACTGTGCTAGATTTTGCTACTCTCATTTCAACAGCTTGGCTCATTTTTATGATACGGTTCAAACTGAAGTCAACCTACATAAAGGAACTCGACAACTTTCGCTTATATTTTGTGGTGGTGCCTGCTGCTATCCTTGCCCTGCTTTTCCACCCATACATGCTGAGTAGTCGTATTACTAGAGTTCTTTGGGCATTTGGTGGGTACATAGAAGCTGTTTCAGTACTGCCACAGCTTCGTTTGATGCAGAATGCAAAGATGATTGAACCATTTACCTCCCATTATGTATTTGCATTGGGTATTTCAAGATTCTTTGCTTGTGCTCATTGGATCATTATGATCTACGAAACTAAAGGCAAATATCTATTCTTGGTTGGGAGTGGTTATTCGTGGATTTTGGCTGCCTTGATCTGTGAAATTGTTCAAACATTCATCTTAGCAGACTTTTGTTACTATTACATAAAGAGTTATGTACAAGGTCAGCTCGTAATGAGGATGCCTGTCTAG

Protein Analysis

271

Amino Acids

31.17

Weight (kDa)

9.63

Isoelectric Point (pI)

33.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ER_lumen_recept PF00810 73 - 215 9.3e-42 ER lumen protein retaining receptor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015838)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19970 AT1G19970 AT3G25160
fragaria_vesca FvH4_2g18430
malus_domestica MD05G1170200.v1.1
prunus_persica Prupe.8G197400_v2.0.a1
pyrus_communis pycom05g15740
rosa_chinensis RchiOBHm_Chr6g0283911
rosa_laevigata RLG00000012787
rosa_rugosa Rorug06G0158400
rosa_samantha Rh6AG271400 Rh6BG272600 Rh6CG273800 Rh6DG266700
rosa_wichuraiana Rw6G023410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 430
AclWI GGATC 2 cut(s) 188, 647
AcuI CTGAAG 4 cut(s) 6, 137, 180, 398
AdeI CACNNNGTG 1 cut(s) 316
AfaI GTAC 4 cut(s) 289, 515, 534, 783
AgsI TTSAA 6 cut(s) 41, 342, 373, 575, 615, 734
AluBI AGCT 6 cut(s) 202, 257, 347, 524, 544, 793
AluI AGCT 6 cut(s) 202, 257, 347, 524, 544, 793
Alw21I GWGCWC 2 cut(s) 312, 634
Alw44I GTGCAC 1 cut(s) 308
AlwI GGATC 2 cut(s) 188, 647
ApaLI GTGCAC 1 cut(s) 308
ApeKI GCWGC 3 cut(s) 257, 437, 710
Asp700I GAANNNNTTC 2 cut(s) 165, 729
AspLEI GCGC 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 312
BanI GGYRCC 1 cut(s) 430
BarI GAAGNNNNNNTAC 2 cut(s) 371, 403
Bbv12I GWGCWC 2 cut(s) 312, 634
BbvI GCAGC 3 cut(s) 244, 424, 697
BccI CCATC 1 cut(s) 299
BfaI CTAG 3 cut(s) 320, 489, 814
BfuAI ACCTGC 1 cut(s) 227
BglII AGATCT 1 cut(s) 72
BisI GCNGC 3 cut(s) 258, 438, 711
BlsI GCNGC 3 cut(s) 259, 439, 712
BmcAI AGTACT 1 cut(s) 534
BmiI GGNNCC 2 cut(s) 85, 432
BmsI GCATC 2 cut(s) 543, 795
BpuEI CTTGAG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 150
BseGI GGATG 1 cut(s) 810
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 464
BseRI GAGGAG 3 cut(s) 22, 25, 64
BseSI GKGCMC 1 cut(s) 312
BseXI GCAGC 3 cut(s) 244, 424, 697
BshNI GGYRCC 1 cut(s) 430
BsiHKAI GWGCWC 2 cut(s) 312, 634
BsmI GAATGC 1 cut(s) 565
Bsp1286I GDGCHC 2 cut(s) 312, 634
Bsp1407I TGTACA 1 cut(s) 781
Bsp143I GATC 5 cut(s) 72, 180, 639, 648, 717
BspCNI CTCAG 1 cut(s) 465
BspHI TCATGA 1 cut(s) 136
BspLI GGNNCC 2 cut(s) 85, 432
BspMI ACCTGC 1 cut(s) 227
BspPI GGATC 2 cut(s) 188, 647
BspT107I GGYRCC 1 cut(s) 430
BsrDI GCAATG 1 cut(s) 150
BsrGI TGTACA 1 cut(s) 781
BssMI GATC 5 cut(s) 72, 180, 639, 648, 717
Bst4CI ACNGT 2 cut(s) 316, 369
BstAPI GCANNNNNTGC 1 cut(s) 316
BstAUI TGTACA 1 cut(s) 781
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 2 cut(s) 473, 745
BstF5I GGATG 1 cut(s) 810
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 5 cut(s) 75, 183, 642, 651, 720
BstMBI GATC 5 cut(s) 72, 180, 639, 648, 717
BstMWI GCNNNNNNNGC 5 cut(s) 92, 161, 266, 316, 446
BstNSI RCATGY 1 cut(s) 472
BstSLI GKGCMC 1 cut(s) 312
BstV1I GCAGC 3 cut(s) 244, 424, 697
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
BtsCI GGATG 1 cut(s) 810
BtsIMutI CAGTG 3 cut(s) 30, 113, 312
BveI ACCTGC 1 cut(s) 227
Cac8I GCNNGC 1 cut(s) 435
CciI TCATGA 1 cut(s) 136
CfoI GCGC 1 cut(s) 97
Csp6I GTAC 4 cut(s) 288, 514, 533, 782
CviAII CATG 3 cut(s) 137, 295, 469
CviQI GTAC 4 cut(s) 288, 514, 533, 782
DdeI CTNAG 2 cut(s) 473, 745
DpnI GATC 5 cut(s) 74, 182, 641, 650, 719
DpnII GATC 5 cut(s) 72, 180, 639, 648, 717
DraIII CACNNNGTG 1 cut(s) 316
Eco57I CTGAAG 4 cut(s) 6, 137, 180, 398
FaeI CATG 3 cut(s) 140, 298, 472
FatI CATG 3 cut(s) 136, 294, 468
Fnu4HI GCNGC 3 cut(s) 258, 438, 711
Fsp4HI GCNGC 3 cut(s) 258, 438, 711
FspBI CTAG 3 cut(s) 320, 489, 814
GlaI GCGC 1 cut(s) 96
GluI GCNGC 3 cut(s) 258, 438, 711
HhaI GCGC 1 cut(s) 97
Hin1II CATG 3 cut(s) 140, 298, 472
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HinfI GANTC 3 cut(s) 133, 241, 618
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 310, 384
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 5 cut(s) 70, 130, 137, 245, 615
Hpy8I GTNNAC 2 cut(s) 310, 384
HpyCH4III ACNGT 2 cut(s) 316, 369
HpyCH4V TGCA 5 cut(s) 285, 310, 556, 563, 602
HpyF10VI GCNNNNNNNGC 5 cut(s) 92, 161, 266, 316, 446
HpyF3I CTNAG 2 cut(s) 473, 745
Hsp92II CATG 3 cut(s) 140, 298, 472
HspAI GCGC 1 cut(s) 95
Kzo9I GATC 5 cut(s) 72, 180, 639, 648, 717
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 5 cut(s) 161, 210, 232, 447, 464
Lsp1109I GCAGC 3 cut(s) 244, 424, 697
LweI GCATC 2 cut(s) 543, 795
MaeI CTAG 3 cut(s) 320, 489, 814
MaeIII GTNAC 1 cut(s) 758
MalI GATC 5 cut(s) 74, 182, 641, 650, 719
MboI GATC 5 cut(s) 72, 180, 639, 648, 717
MflI RGATCY 1 cut(s) 72
MhlI GDGCHC 2 cut(s) 312, 634
MluCI AATT 1 cut(s) 726
MlyI GAGTC 1 cut(s) 235
MnlI CCTC 9 cut(s) 3, 6, 42, 45, 166, 200, 292, 595, 795
MroXI GAANNNNTTC 2 cut(s) 165, 729
MslI CAYNNNNRTG 1 cut(s) 359
MspA1I CMGCKG 1 cut(s) 257
Mva1269I GAATGC 1 cut(s) 565
MwoI GCNNNNNNNGC 5 cut(s) 92, 161, 266, 316, 446
NdeII GATC 5 cut(s) 72, 180, 639, 648, 717
NlaIII CATG 3 cut(s) 140, 298, 472
NlaIV GGNNCC 2 cut(s) 85, 432
NspI RCATGY 1 cut(s) 472
PagI TCATGA 1 cut(s) 136
PctI GAATGC 1 cut(s) 565
PdmI GAANNNNTTC 2 cut(s) 165, 729
PfeI GAWTC 2 cut(s) 133, 618
PkrI GCNGC 3 cut(s) 259, 439, 712
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 85, 432
PsuI RGATCY 1 cut(s) 72
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 4 cut(s) 289, 515, 534, 783
RsaNI GTAC 4 cut(s) 288, 514, 533, 782
RseI CAYNNNNRTG 1 cut(s) 359
SatI GCNGC 3 cut(s) 258, 438, 711
Sau3AI GATC 5 cut(s) 72, 180, 639, 648, 717
ScaI AGTACT 1 cut(s) 534
SchI GAGTC 1 cut(s) 235
SduI GDGCHC 2 cut(s) 312, 634
SfaNI GCATC 2 cut(s) 543, 795
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
Sse9I AATT 1 cut(s) 726
SspMI CTAG 3 cut(s) 320, 489, 814
TaaI ACNGT 2 cut(s) 316, 369
TaqI TCGA 1 cut(s) 402
TasI AATT 1 cut(s) 726
TatI WGTACW 2 cut(s) 532, 781
TfiI GAWTC 2 cut(s) 133, 618
TscAI CASTG 3 cut(s) 30, 120, 319
TseI GCWGC 3 cut(s) 257, 437, 710
TspDTI ATGAA 4 cut(s) 77, 139, 158, 730
TspRI CASTG 3 cut(s) 30, 120, 319
VneI GTGCAC 1 cut(s) 308
XceI RCATGY 1 cut(s) 472
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmnI GAANNNNTTC 2 cut(s) 165, 729
XspI CTAG 3 cut(s) 320, 489, 814
ZrmI AGTACT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.