AT1G20550

fucose metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009884
Physical Location & Seq
Reverse (-)
7115241 .. 7118331
3091 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G20550.1

Sequence Viewer

Length: 1695 bp
ATGGCTTTTCAACGGCGGCGCAACAATTACTACAACCGTCTCCGTCGTCTTCTTCCTTTCATTTGCGCTGTCTCTGGAGCTCTTCTCATCCTCTTCGCTCTTCTCTCCATTCTTTCCCCTCCTCCTGATGATTCCGATCGCCGCATCTCCAAGCATATTAACTATGGAGCCAATGATGAGAAGAAGAACACACCAGTGGTTTTCACAGTTCCGAGAGGTGGAGGAAGATCGGATCGTGATATCTGGCGTTCATGGAATGCTGAATTCTTTTATGGTTGTTGTAATGCAAGCAGCAAGTTCCCAAATGCTAAAGCAATTACTAGAAATGATCGATACTTGGCGATTGCCACTAGTGGCGGTTTAAACCAACAACGGACTGGTATTGTAGATGCTGTTGTTGCTGCAAGGATTCTAAACGCTACGCTTGTTATTCCGAAGTTGGACCAGAAATCCTACTGGAAAGATGCCAGTGACTTCTCGAACATTTTCGATGTTGATTGGTTTATGTCATTTCTCTCAAAAGATGTCAAAATCATTGAGAAACTTCCACAGAAAGGAGGGCAAACATGGAGCCCTCGCAGAATGCGTGTACCGAGAAAATGCAATGAGAAATGCTATATCAATCGGGTGTTACCTGTTCTTCAGAAAAGGCATGCAGTTCAATTGAATAAATTTGATTACAGACTCTCAAACAAGTTGAGAGATGATTTGCAGAAGCTGAGGTGTAGAGTAAACTATCATGCGCTTAAGTTTACTGATCCAATTCTTGAAATGGGTAACGAATTGGTCAGAAGAATGCGGAAAAGGAGCAAACACTTCATTGCTTTACATCTTAGGTTTGAACCTGATATGCTCGCCTTCTCTGGATGTTACTATGGTGGTGGTGAGAAGGAGAAGAAAGAGTTAGGAACAATCAGAAGGAGATGGAAAACTTTGCATGTAAATAACCCTGAAAAGCAAAGGAGACAAGGAAGATGTCCACTTACACCAGAAGAAGTTGGATTAATGCTTAGAGCTTTGGGATATGGAAGTGATGTTCATATATATGTTGCATCAGGTGAAGTTTATGGAGGAGAAAAATCATTGGCTCCTTTGAAAGCACTTTTTCCACATTTCTATTCAAAAGACACCATAGCTACAAAAATGGAGTTAAAACCATTTTCTTCTTATTCTTCACGAATGGCTGCACTCGATTTCCTTGTGTGTGACGAAAGCGATGTTTTCGTTACCAACAATAACGGAAACATGGCGAGAATATTAGCAGGTCGAAGGAGATACTTTGGACATAAACCAACAATTAGACCGAATGCGAAAAAGCTATACAAGTTGTTTATGAGCAAAGAGAATACTACTTGGGAGGAGTTTGCTTCAAGAGTGAGAACATTTCAGAAAGGATTCATGGGAGAACCAAAGGAGGTAAGAGCCGGAAAAGGTGAGTTTCATGAGAATCCAGCGGCTTGTATATGCGAAGATACTGATGCTAAAGTAAAAGCGGGAAAGATGGATTCGAGAAAATTCGGGAAGAAAGAGCAGAAAGAAGATGAAGATGCAGAGTTGTCGTCGTCAGAGACAGATTATGAGGAAGACCAAACTGATTTACAGGACAGAGGCTTGTATAATGGTACGAGGTTAGATTATGATGATGCGTTATCGGTTTCAGAAGAGCCTGAGCTAGAAGAAATGCTATCAGATTGA

Protein Analysis

564

Amino Acids

64.9

Weight (kDa)

9.39

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 112 - 426 3.6e-102 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1253
AciI CCGC 6 cut(s) 16, 142, 357, 799, 1454, 1493
AclWI GGATC 2 cut(s) 240, 752
AcsI RAATTY 3 cut(s) 263, 671, 1514
AcuI CTGAAG 1 cut(s) 626
AfaI GTAC 2 cut(s) 591, 1624
AfiI CCNNNNNNNGG 2 cut(s) 218, 554
AflII CTTAAG 1 cut(s) 746
AgsI TTSAA 8 cut(s) 11, 662, 667, 770, 842, 1096, 1122, 1371
AhlI ACTAGT 1 cut(s) 350
AleI CACNNNNGTG 1 cut(s) 194
AloI GAACNNNNNNTCC 2 cut(s) 1020, 1052
AluBI AGCT 6 cut(s) 80, 718, 1016, 1136, 1318, 1672
AluI AGCT 6 cut(s) 80, 718, 1016, 1136, 1318, 1672
Alw21I GWGCWC 1 cut(s) 82
Alw26I GTCTC 4 cut(s) 44, 76, 958, 1562
AlwI GGATC 2 cut(s) 240, 752
AlwNI CAGNNNCTG 1 cut(s) 718
ApeKI GCWGC 3 cut(s) 291, 401, 1184
ApoI RAATTY 3 cut(s) 263, 671, 1514
AseI ATTAAT 1 cut(s) 1004
Asp700I GAANNNNTTC 2 cut(s) 485, 1394
AspLEI GCGC 3 cut(s) 21, 68, 745
AspS9I GGNCC 1 cut(s) 442
AsuHPI GGTGA 3 cut(s) 896, 1070, 1445
AvaII GGWCC 1 cut(s) 442
BanII GRGCYC 2 cut(s) 82, 575
BbsI GAAGAC 2 cut(s) 41, 1590
Bbv12I GWGCWC 1 cut(s) 82
BbvCI CCTCAGC 1 cut(s) 719
BbvI GCAGC 3 cut(s) 303, 388, 1171
BccI CCATC 2 cut(s) 918, 1495
BceAI ACGGC 1 cut(s) 29
BcgI CGANNNNNNTGC 2 cut(s) 1539, 1573
BcoDI GTCTC 4 cut(s) 44, 76, 958, 1562
BcuI ACTAGT 1 cut(s) 350
BfaI CTAG 3 cut(s) 321, 351, 1673
BfrI CTTAAG 1 cut(s) 746
BfuAI ACCTGC 1 cut(s) 1253
BisI GCNGC 6 cut(s) 17, 142, 292, 402, 1185, 1455
BlsI GCNGC 6 cut(s) 18, 143, 293, 403, 1186, 1456
Bme18I GGWCC 1 cut(s) 442
BmgT120I GGNCC 1 cut(s) 442
BmiI GGNNCC 3 cut(s) 169, 572, 1089
BmsI GCATC 7 cut(s) 153, 379, 454, 1061, 1468, 1537, 1633
BpiI GAAGAC 2 cut(s) 41, 1590
BplI GAGNNNNNCTC 2 cut(s) 69, 101
BpmI CTGGAG 1 cut(s) 96
Bpu10I CCTNAGC 2 cut(s) 719, 1668
Bsa29I ATCGAT 1 cut(s) 331
BsaBI GATNNNNATC 1 cut(s) 135
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 554
Bse1I ACTGG 4 cut(s) 194, 382, 461, 468
Bse3DI GCAATG 2 cut(s) 610, 819
Bse8I GATNNNNATC 1 cut(s) 135
BseCI ATCGAT 1 cut(s) 331
BseGI GGATG 2 cut(s) 87, 872
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 218, 554
BseMI GCAATG 2 cut(s) 610, 819
BseMII CTCAG 2 cut(s) 710, 1659
BseNI ACTGG 4 cut(s) 194, 382, 461, 468
BseRI GAGGAG 3 cut(s) 111, 1086, 1373
BseXI GCAGC 3 cut(s) 303, 388, 1171
BsgI GTGCAG 1 cut(s) 1170
Bsh1285I CGRYCG 1 cut(s) 139
BshVI ATCGAT 1 cut(s) 331
BsiEI CGRYCG 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 1425
BslI CCNNNNNNNGG 2 cut(s) 218, 554
BsmAI GTCTC 4 cut(s) 44, 76, 958, 1562
BsmBI CGTCTC 1 cut(s) 44
BsmI GAATGC 4 cut(s) 262, 588, 801, 1312
Bsp1286I GDGCHC 2 cut(s) 82, 575
Bsp143I GATC 5 cut(s) 136, 227, 232, 328, 757
BspACI CCGC 6 cut(s) 16, 142, 357, 799, 1454, 1493
BspCNI CTCAG 2 cut(s) 711, 1660
BspDI ATCGAT 1 cut(s) 331
BspHI TCATGA 1 cut(s) 1441
BspLI GGNNCC 3 cut(s) 169, 572, 1089
BspMI ACCTGC 1 cut(s) 1253
BspPI GGATC 2 cut(s) 240, 752
BspQI GCTCTTC 3 cut(s) 87, 105, 1656
BspTI CTTAAG 1 cut(s) 746
BsrDI GCAATG 2 cut(s) 610, 819
BsrI ACTGG 4 cut(s) 194, 382, 461, 468
BssMI GATC 5 cut(s) 136, 227, 232, 328, 757
Bst4CI ACNGT 2 cut(s) 38, 208
Bst6I CTCTTC 4 cut(s) 87, 98, 105, 1656
BstAFI CTTAAG 1 cut(s) 746
BstC8I GCNNGC 3 cut(s) 289, 654, 855
BstDEI CTNAG 4 cut(s) 719, 833, 1010, 1668
BstF5I GGATG 2 cut(s) 87, 872
BstHHI GCGC 3 cut(s) 21, 68, 745
BstKTI GATC 5 cut(s) 139, 230, 235, 331, 760
BstMAI GTCTC 4 cut(s) 44, 76, 958, 1562
BstMBI GATC 5 cut(s) 136, 227, 232, 328, 757
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstNSI RCATGY 2 cut(s) 656, 941
BstV1I GCAGC 3 cut(s) 303, 388, 1171
BstV2I GAAGAC 2 cut(s) 41, 1590
Bsu15I ATCGAT 1 cut(s) 331
BsuTUI ATCGAT 1 cut(s) 331
BtgZI GCGATG 1 cut(s) 1230
BtsCI GGATG 2 cut(s) 87, 872
BtsIMutI CAGTG 2 cut(s) 201, 475
BveI ACCTGC 1 cut(s) 1253
Cac8I GCNNGC 3 cut(s) 289, 654, 855
CaiI CAGNNNCTG 1 cut(s) 718
CciI TCATGA 1 cut(s) 1441
CfoI GCGC 3 cut(s) 21, 68, 745
Cfr13I GGNCC 1 cut(s) 442
ClaI ATCGAT 1 cut(s) 331
Csp6I GTAC 2 cut(s) 590, 1623
CviAII CATG 8 cut(s) 252, 567, 653, 740, 938, 1246, 1399, 1442
CviQI GTAC 2 cut(s) 590, 1623
DdeI CTNAG 4 cut(s) 719, 833, 1010, 1668
DpnI GATC 5 cut(s) 138, 229, 234, 330, 759
DpnII GATC 5 cut(s) 136, 227, 232, 328, 757
DraI TTTAAA 1 cut(s) 363
Eam1104I CTCTTC 4 cut(s) 87, 98, 105, 1656
EarI CTCTTC 4 cut(s) 87, 98, 105, 1656
Ecl136II GAGCTC 1 cut(s) 80
Eco24I GRGCYC 2 cut(s) 82, 575
Eco32I GATATC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 442
Eco53kI GAGCTC 1 cut(s) 80
Eco57I CTGAAG 1 cut(s) 626
EcoICRI GAGCTC 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 263
EcoRV GATATC 1 cut(s) 241
EcoT38I GRGCYC 2 cut(s) 82, 575
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 8 cut(s) 255, 570, 656, 743, 941, 1249, 1402, 1445
FatI CATG 8 cut(s) 251, 566, 652, 739, 937, 1245, 1398, 1441
FauI CCCGC 1 cut(s) 1486
Fnu4HI GCNGC 6 cut(s) 17, 142, 292, 402, 1185, 1455
FokI GGATG 2 cut(s) 74, 879
FriOI GRGCYC 2 cut(s) 82, 575
Fsp4HI GCNGC 6 cut(s) 17, 142, 292, 402, 1185, 1455
FspBI CTAG 3 cut(s) 321, 351, 1673
GlaI GCGC 3 cut(s) 20, 67, 744
GluI GCNGC 6 cut(s) 17, 142, 292, 402, 1185, 1455
GsuI CTGGAG 1 cut(s) 96
HapII CCGG 1 cut(s) 1425
HhaI GCGC 3 cut(s) 21, 68, 745
Hin1II CATG 8 cut(s) 255, 570, 656, 743, 941, 1249, 1402, 1445
Hin6I GCGC 3 cut(s) 19, 66, 743
HinP1I GCGC 3 cut(s) 19, 66, 743
HinfI GANTC 6 cut(s) 131, 409, 684, 1395, 1447, 1505
HpaII CCGG 1 cut(s) 1425
HphI GGTGA 3 cut(s) 896, 1070, 1445
Hpy166II GTNNAC 4 cut(s) 590, 733, 753, 980
Hpy8I GTNNAC 4 cut(s) 590, 733, 753, 980
Hpy99I CGWCG 2 cut(s) 48, 1564
HpyAV CCTTC 4 cut(s) 868, 883, 912, 1263
HpyCH4III ACNGT 2 cut(s) 38, 208
HpyCH4V TGCA 9 cut(s) 287, 404, 603, 656, 712, 937, 1052, 1187, 1550
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 4 cut(s) 719, 833, 1010, 1668
Hsp92II CATG 8 cut(s) 255, 570, 656, 743, 941, 1249, 1402, 1445
HspAI GCGC 3 cut(s) 19, 66, 743
Kzo9I GATC 5 cut(s) 136, 227, 232, 328, 757
LguI GCTCTTC 3 cut(s) 87, 105, 1656
LmnI GCTCC 5 cut(s) 77, 167, 570, 807, 1093
Lsp1109I GCAGC 3 cut(s) 303, 388, 1171
LweI GCATC 7 cut(s) 153, 379, 454, 1061, 1468, 1537, 1633
MaeI CTAG 3 cut(s) 321, 351, 1673
MaeIII GTNAC 6 cut(s) 470, 630, 776, 869, 1205, 1225
MalI GATC 5 cut(s) 138, 229, 234, 330, 759
MboI GATC 5 cut(s) 136, 227, 232, 328, 757
MfeI CAATTG 1 cut(s) 662
MhlI GDGCHC 2 cut(s) 82, 575
MluCI AATT 9 cut(s) 25, 263, 315, 662, 671, 762, 782, 1296, 1514
MlyI GAGTC 1 cut(s) 678
MmeI TCCRAC 2 cut(s) 420, 979
MroXI GAANNNNTTC 2 cut(s) 485, 1394
MseI TTAA 5 cut(s) 159, 362, 747, 1004, 1151
MslI CAYNNNNRTG 2 cut(s) 194, 1044
MspA1I CMGCKG 1 cut(s) 1454
MspCI CTTAAG 1 cut(s) 746
MspI CCGG 1 cut(s) 1425
MssI GTTTAAAC 1 cut(s) 363
MunI CAATTG 1 cut(s) 662
Mva1269I GAATGC 4 cut(s) 262, 588, 801, 1312
MwoI GCNNNNNNNGC 1 cut(s) 398
NdeII GATC 5 cut(s) 136, 227, 232, 328, 757
NlaIII CATG 8 cut(s) 255, 570, 656, 743, 941, 1249, 1402, 1445
NlaIV GGNNCC 3 cut(s) 169, 572, 1089
NmuCI GTSAC 2 cut(s) 470, 1205
NspI RCATGY 2 cut(s) 656, 941
OliI CACNNNNGTG 1 cut(s) 194
PaeI GCATGC 1 cut(s) 656
PagI TCATGA 1 cut(s) 1441
PciSI GCTCTTC 3 cut(s) 87, 105, 1656
PcsI WCGNNNNNNNCGW 1 cut(s) 583
PctI GAATGC 4 cut(s) 262, 588, 801, 1312
PdmI GAANNNNTTC 2 cut(s) 485, 1394
PfeI GAWTC 5 cut(s) 131, 409, 1395, 1447, 1505
PkrI GCNGC 6 cut(s) 18, 143, 293, 403, 1186, 1456
Ple19I CGATCG 1 cut(s) 139
PleI GAGTC 1 cut(s) 678
PmeI GTTTAAAC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 678
PshBI ATTAAT 1 cut(s) 1004
Psp124BI GAGCTC 1 cut(s) 82
PspN4I GGNNCC 3 cut(s) 169, 572, 1089
PspPI GGNCC 1 cut(s) 442
PstNI CAGNNNCTG 1 cut(s) 718
PvuI CGATCG 1 cut(s) 139
RsaI GTAC 2 cut(s) 591, 1624
RsaNI GTAC 2 cut(s) 590, 1623
RseI CAYNNNNRTG 2 cut(s) 194, 1044
SacI GAGCTC 1 cut(s) 82
SapI GCTCTTC 3 cut(s) 87, 105, 1656
SaqAI TTAA 5 cut(s) 159, 362, 747, 1004, 1151
SatI GCNGC 6 cut(s) 17, 142, 292, 402, 1185, 1455
Sau3AI GATC 5 cut(s) 136, 227, 232, 328, 757
Sau96I GGNCC 1 cut(s) 442
SchI GAGTC 1 cut(s) 678
SduI GDGCHC 2 cut(s) 82, 575
SfaNI GCATC 7 cut(s) 153, 379, 454, 1061, 1468, 1537, 1633
SinI GGWCC 1 cut(s) 442
SmiMI CAYNNNNRTG 2 cut(s) 194, 1044
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
SpeI ACTAGT 1 cut(s) 350
SphI GCATGC 1 cut(s) 656
Sse9I AATT 9 cut(s) 25, 263, 315, 662, 671, 762, 782, 1296, 1514
SsiI CCGC 6 cut(s) 16, 142, 357, 799, 1454, 1493
SspI AATATT 1 cut(s) 1257
SspMI CTAG 3 cut(s) 321, 351, 1673
SstI GAGCTC 1 cut(s) 82
TaaI ACNGT 2 cut(s) 38, 208
TaqI TCGA 6 cut(s) 331, 479, 489, 1191, 1267, 1508
TaqII GACCGA 1 cut(s) 1318
TasI AATT 9 cut(s) 25, 263, 315, 662, 671, 762, 782, 1296, 1514
TauI GCSGC 3 cut(s) 19, 144, 1457
TfiI GAWTC 5 cut(s) 131, 409, 1395, 1447, 1505
Tru1I TTAA 5 cut(s) 159, 362, 747, 1004, 1151
Tru9I TTAA 5 cut(s) 159, 362, 747, 1004, 1151
TscAI CASTG 2 cut(s) 201, 475
TseFI GTSAC 2 cut(s) 470, 1205
TseI GCWGC 3 cut(s) 291, 401, 1184
Tsp45I GTSAC 2 cut(s) 470, 1205
TspDTI ATGAA 7 cut(s) 49, 240, 808, 1028, 1387, 1430, 1557
TspGWI ACGGA 3 cut(s) 32, 388, 1254
TspRI CASTG 2 cut(s) 201, 475
Vha464I CTTAAG 1 cut(s) 746
VpaK11BI GGWCC 1 cut(s) 442
VspI ATTAAT 1 cut(s) 1004
XapI RAATTY 3 cut(s) 263, 671, 1514
XceI RCATGY 2 cut(s) 656, 941
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XmnI GAANNNNTTC 2 cut(s) 485, 1394
XspI CTAG 3 cut(s) 321, 351, 1673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.