Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009884

Physical Location & Seq

Genomic Coordinates Forward (+)

146476 .. 148129

Gene Structure 1654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1002500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTGCAAGCGCAAGTTGTGTGTGCACTTATGTTTATTTAGTAAAGCCAAGGAGGTGTATATCAAGTATAAGATTAGCAATCCTGATAAGCCAAGGAGGCATGGGAGGTGTCCACTTACTCCAGAAGAAGTTGGTCTTATGTTGAGAGCACTGGGTTATGGCAGCGATGTTCACATCTATGTGGCATCAGGGGAAGTCTATGGAGGAGAAGAAACATTGGCACCCCTTAAGGCACTATTCCCCAACTTTTATTCGAAAGAGACAATAGCAACCAAGGAGGAATTGGAACCATTTTATTCATTTTCTTCTCGCATGGCAGCACTTGACTTCATAGTTTGTGATGAGAGTGATGTCTTTGTCACCAACAACAATGGCAATATGGCCAAAATATTAGCCGGACGAAGGAGATATTTTGGACATAAGCCCACTATTCGTCCAAATGCTAAAAAACTCTACCGGTTGTTCCTAAGCAAAGAGAACATGACCTGGGGAGCTTTTGCTTCTAATGTTCGTACTTATCAGAGAGGCTTTATGGGTGAGCCGAATGAAGTGAGGCCAGGCAGGGGTGGTTTTCATGAGAACCCATATACCTGCATATGTGAAGATTCTCAGGCCAAGGCCAAGAGGGATGTAGGACCTAGAAAATATGGTAGGAGTAGTAACATAACAGGAAAAGACGAAGTAGATTTTGATGCCCAAAACGTGGAAGATGATCCAGAAGGGCCTGATACTGATGAGGATGAGTATCAAAGTGCCCCCTTGGACAATGATTTGTTTAACAGAAGAGGCGTGGATTATGATGCTGTCAACTCCGAGGAACCTGAATTGGAGGAGATGCTTTCAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

283

Amino Acids

32.02

Weight (kDa)

5.46

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	14 - 137	7.7e-34	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20550 AT1G76270
fragaria_vesca	FvH4_2g37540 FvH4_2g37540 FvH4_2g37540
malus_domestica	MD08G1002700.v1.1 MD15G1002400.v1.1 MD15G1002500.v1.1
prunus_persica	Prupe.1G354800_v2.0.a1
pyrus_communis	pycom08g00230 pycom15g00140
rosa_chinensis	RchiOBHm_Chr6g0304211
rosa_laevigata	RLG00000011006
rosa_multiflora	Rmu_sc0023816.1_g000003 Rmu_ssc0000218.1_g000012
rosa_roxburghii	Rroxscaffold_7G00163970
rosa_rugosa	Rorug06G0328700
rosa_samantha	Rh6BG460100 Rh6CG455000 Rh6DG442000
rosa_wichuraiana	Rw6G038370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	599
AccB1I	GGYRCC	1 cut(s)	220
AccB7I	CCANNNNNTGG	1 cut(s)	703
AclWI	GGATC	1 cut(s)	707
AcoI	YGGCCR	1 cut(s)	381
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	3 cut(s)	402, 563, 703
AflII	CTTAAG	1 cut(s)	227
AgeI	ACCGGT	1 cut(s)	456
AjnI	CCWGG	2 cut(s)	485, 556
AluBI	AGCT	1 cut(s)	494
AluI	AGCT	1 cut(s)	494
Alw21I	GWGCWC	2 cut(s)	27, 151
Alw26I	GTCTC	1 cut(s)	254
Alw44I	GTGCAC	1 cut(s)	23
AlwI	GGATC	1 cut(s)	707
AoxI	GGCC	5 cut(s)	381, 554, 612, 618, 722
ApaLI	GTGCAC	1 cut(s)	23
ApeKI	GCWGC	2 cut(s)	162, 317
AsiGI	ACCGGT	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	635, 722
AsuHPI	GGTGA	2 cut(s)	352, 548
AsuII	TTCGAA	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	635
BaeGI	GKGCMC	2 cut(s)	27, 757
BalI	TGGCCA	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	220
Bbv12I	GWGCWC	2 cut(s)	27, 151
BbvI	GCAGC	2 cut(s)	174, 329
BciT130I	CCWGG	2 cut(s)	487, 558
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	2 cut(s)	639, 847
BfrI	CTTAAG	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	599
BglI	GCCNNNNNGGC	1 cut(s)	97
BisI	GCNGC	2 cut(s)	163, 318
BlsI	GCNGC	2 cut(s)	164, 319
Bme1390I	CCNGG	2 cut(s)	487, 558
Bme18I	GGWCC	1 cut(s)	635
BmgT120I	GGNCC	2 cut(s)	635, 722
BmiI	GGNNCC	3 cut(s)	222, 288, 819
BmrFI	CCNGG	2 cut(s)	487, 558
BmrI	ACTGGG	1 cut(s)	161
BmsI	GCATC	4 cut(s)	194, 682, 790, 825
BmuI	ACTGGG	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	467
Bpu14I	TTCGAA	1 cut(s)	254
BsaBI	GATNNNNATC	1 cut(s)	744
BsaJI	CCNNGG	7 cut(s)	48, 92, 273, 486, 615, 759, 813
BsaWI	WCCGGW	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	3 cut(s)	402, 563, 703
Bse118I	RCCGGY	1 cut(s)	456
Bse1I	ACTGG	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	744
BseBI	CCWGG	2 cut(s)	487, 558
BseDI	CCNNGG	7 cut(s)	48, 92, 273, 486, 615, 759, 813
BseGI	GGATG	2 cut(s)	634, 745
BseJI	GATNNNNATC	1 cut(s)	744
BseLI	CCNNNNNNNGG	3 cut(s)	402, 563, 703
BseMII	CTCAG	1 cut(s)	623
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	2 cut(s)	219, 845
BseSI	GKGCMC	2 cut(s)	27, 757
BseXI	GCAGC	2 cut(s)	174, 329
BshFI	GGCC	5 cut(s)	383, 556, 614, 620, 724
BshNI	GGYRCC	1 cut(s)	220
BshTI	ACCGGT	1 cut(s)	456
BsiHKAI	GWGCWC	2 cut(s)	27, 151
BsiSI	CCGG	2 cut(s)	396, 457
BslI	CCNNNNNNNGG	3 cut(s)	402, 563, 703
BsmAI	GTCTC	1 cut(s)	254
BsnI	GGCC	5 cut(s)	383, 556, 614, 620, 724
Bsp119I	TTCGAA	1 cut(s)	254
Bsp1286I	GDGCHC	3 cut(s)	27, 151, 757
Bsp143I	GATC	1 cut(s)	712
BspANI	GGCC	5 cut(s)	383, 556, 614, 620, 724
BspCNI	CTCAG	1 cut(s)	622
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	3 cut(s)	222, 288, 819
BspMI	ACCTGC	1 cut(s)	599
BspPI	GGATC	1 cut(s)	707
BspT104I	TTCGAA	1 cut(s)	254
BspT107I	GGYRCC	1 cut(s)	220
BspTI	CTTAAG	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	456
BsrI	ACTGG	1 cut(s)	156
BssAI	RCCGGY	1 cut(s)	456
BssECI	CCNNGG	7 cut(s)	48, 92, 273, 486, 615, 759, 813
BssMI	GATC	1 cut(s)	712
BssT1I	CCWWGG	5 cut(s)	48, 92, 273, 615, 759
Bst2UI	CCWGG	2 cut(s)	487, 558
Bst6I	CTCTTC	1 cut(s)	778
BstAFI	CTTAAG	1 cut(s)	227
BstBI	TTCGAA	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	467, 609
BstF5I	GGATG	2 cut(s)	634, 745
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	1 cut(s)	715
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	1 cut(s)	712
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNI	CCWGG	2 cut(s)	487, 558
BstSCI	CCNGG	2 cut(s)	485, 556
BstSLI	GKGCMC	2 cut(s)	27, 757
BstV1I	GCAGC	2 cut(s)	174, 329
BsuRI	GGCC	5 cut(s)	383, 556, 614, 620, 724
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	634, 745
BtsIMutI	CAGTG	1 cut(s)	149
BveI	ACCTGC	1 cut(s)	599
Cac8I	GCNNGC	1 cut(s)	8
CciI	TCATGA	1 cut(s)	574
CfoI	GCGC	1 cut(s)	12
Cfr10I	RCCGGY	1 cut(s)	456
Cfr13I	GGNCC	2 cut(s)	635, 722
Csp6I	GTAC	1 cut(s)	513
CspAI	ACCGGT	1 cut(s)	456
CviAII	CATG	4 cut(s)	101, 313, 481, 575
CviQI	GTAC	1 cut(s)	513
DdeI	CTNAG	2 cut(s)	467, 609
DpnI	GATC	1 cut(s)	714
DpnII	GATC	1 cut(s)	712
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	778
EarI	CTCTTC	1 cut(s)	778
Eco130I	CCWWGG	5 cut(s)	48, 92, 273, 615, 759
Eco47I	GGWCC	1 cut(s)	635
EcoO109I	RGGNCCY	2 cut(s)	635, 722
EcoRII	CCWGG	2 cut(s)	485, 556
EcoT14I	CCWWGG	5 cut(s)	48, 92, 273, 615, 759
ErhI	CCWWGG	5 cut(s)	48, 92, 273, 615, 759
FaeI	CATG	4 cut(s)	104, 316, 484, 578
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	4 cut(s)	100, 312, 480, 574
FauNDI	CATATG	1 cut(s)	596
Fnu4HI	GCNGC	2 cut(s)	163, 318
FokI	GGATG	2 cut(s)	641, 752
Fsp4HI	GCNGC	2 cut(s)	163, 318
FspBI	CTAG	2 cut(s)	639, 847
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	2 cut(s)	163, 318
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	5 cut(s)	383, 556, 614, 620, 724
HapII	CCGG	2 cut(s)	396, 457
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	4 cut(s)	104, 316, 484, 578
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	808
HindII	GTYRAC	1 cut(s)	808
HinfI	GANTC	1 cut(s)	605
HpaII	CCGG	2 cut(s)	396, 457
HphI	GGTGA	2 cut(s)	352, 548
Hpy166II	GTNNAC	4 cut(s)	25, 113, 172, 808
Hpy188I	TCNGA	3 cut(s)	522, 814, 844
Hpy188III	TCNNGA	4 cut(s)	83, 122, 575, 716
Hpy8I	GTNNAC	4 cut(s)	25, 113, 172, 808
HpyAV	CCTTC	2 cut(s)	396, 713
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	3 cut(s)	6, 25, 594
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	2 cut(s)	467, 609
HpySE526I	ACGT	1 cut(s)	702
Hsp92II	CATG	4 cut(s)	104, 316, 484, 578
HspAI	GCGC	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	712
LmnI	GCTCC	1 cut(s)	491
Lsp1109I	GCAGC	2 cut(s)	174, 329
LweI	GCATC	4 cut(s)	194, 682, 790, 825
MaeI	CTAG	2 cut(s)	639, 847
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	2 cut(s)	358, 659
MalI	GATC	1 cut(s)	714
MboI	GATC	1 cut(s)	712
MboII	GAAGA	6 cut(s)	137, 221, 297, 614, 719, 795
MhlI	GDGCHC	3 cut(s)	27, 151, 757
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	2 cut(s)	281, 824
MluNI	TGGCCA	1 cut(s)	383
Mox20I	TGGCCA	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	2 cut(s)	228, 777
MslI	CAYNNNNRTG	2 cut(s)	177, 179
Msp20I	TGGCCA	1 cut(s)	383
MspCI	CTTAAG	1 cut(s)	227
MspI	CCGG	2 cut(s)	396, 457
MspR9I	CCNGG	2 cut(s)	487, 558
MvaI	CCWGG	2 cut(s)	487, 558
MwoI	GCNNNNNNNGC	1 cut(s)	97
NdeI	CATATG	1 cut(s)	596
NdeII	GATC	1 cut(s)	712
NlaIII	CATG	4 cut(s)	104, 316, 484, 578
NlaIV	GGNNCC	3 cut(s)	222, 288, 819
NmuCI	GTSAC	1 cut(s)	358
NspV	TTCGAA	1 cut(s)	254
PagI	TCATGA	1 cut(s)	574
PfeI	GAWTC	1 cut(s)	605
PflMI	CCANNNNNTGG	1 cut(s)	703
PinAI	ACCGGT	1 cut(s)	456
PkrI	GCNGC	2 cut(s)	164, 319
PpuMI	RGGWCCY	1 cut(s)	635
Psp5II	RGGWCCY	1 cut(s)	635
Psp6I	CCWGG	2 cut(s)	485, 556
PspGI	CCWGG	2 cut(s)	485, 556
PspN4I	GGNNCC	3 cut(s)	222, 288, 819
PspPI	GGNCC	2 cut(s)	635, 722
PspPPI	RGGWCCY	1 cut(s)	635
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
RseI	CAYNNNNRTG	2 cut(s)	177, 179
SaqAI	TTAA	2 cut(s)	228, 777
SatI	GCNGC	2 cut(s)	163, 318
Sau3AI	GATC	1 cut(s)	712
Sau96I	GGNCC	2 cut(s)	635, 722
ScrFI	CCNGG	2 cut(s)	487, 558
SduI	GDGCHC	3 cut(s)	27, 151, 757
SetI	ASST	8 cut(s)	57, 110, 488, 496, 593, 640, 705, 823
SfaNI	GCATC	4 cut(s)	194, 682, 790, 825
SfuI	TTCGAA	1 cut(s)	254
SinI	GGWCC	1 cut(s)	635
SmiMI	CAYNNNNRTG	2 cut(s)	177, 179
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	281, 824
SspI	AATATT	1 cut(s)	390
SspMI	CTAG	2 cut(s)	639, 847
StyD4I	CCNGG	2 cut(s)	485, 556
StyI	CCWWGG	5 cut(s)	48, 92, 273, 615, 759
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	1 cut(s)	254
TasI	AATT	2 cut(s)	281, 824
TfiI	GAWTC	1 cut(s)	605
Tru1I	TTAA	2 cut(s)	228, 777
Tru9I	TTAA	2 cut(s)	228, 777
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	162, 317
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	4 cut(s)	288, 319, 561, 563
TspRI	CASTG	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	703
Vha464I	CTTAAG	1 cut(s)	227
VneI	GTGCAC	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XspI	CTAG	2 cut(s)	639, 847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.