Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009884

Physical Location & Seq

Genomic Coordinates Forward (+)

6084006 .. 6089183

Gene Structure 5178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00163970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGCGTGTCCCAAGGAAGTGTAGTGAAAAATGTTATCAGACTCGTCTAGTACCTGTTCTTTTGAAAAAGCATGCTGTTCAGCTCACAAAGTTTGATTACAGACTTGCAAACAGGTTGGGTACAGATTTGCAAAAATTGAGATGCAGAGTGAATTATCATGCTTTAAAGTTTACTGAGCCAATACGGAAAATGGGTGAAAAGTTGGTTCATCGAATGAGGATGAAAAGCAAGCACTATATCACATTGCACCTGAGGTTTGAACCTGATATGCTTGCATTCTCTGGATGCTATTATGGTGGAGGAGACAAAGAAAGGAAAGAACTTGGTGCAATACGGAAGAGGTGGAAGTCGTTACATATAAGCAACCCTGATAAGCCAAGGAGGCATGGGAGATGTCCCCTTACTCCAGAAGAAGTTGGTCTGATGTTGAGAGCACTCGGTTATGGCAGTGATGTTCATATTTATGTGGCATCAGGGGAAGTGTATGGTGGGGAAGACACGTTGGCGCCCCTTAAAGCACTATTTCCCAACTTCTATTCAAAAGAGACAATAGCAACCAAAGAGGAGTTGGAACCATTTTATTCATTCTCTTCTCGCATGGCTGCTCTTGATTTTATAGTTTGTGATGAAAGTGATGTTTTTGTCACTAACAACAACGGTAATATGGCCAAAATATTAGCTGGACGAAGGAGATATTTTGGGCATAAGCCTACTATTCGTCCAAATGCTAAAAAACTTTATCGATTGTTCTTGAGCAAAGAGAACACAACTTGGGAAGCTTTTGCATCTAGTGTTCGTACTTACCAGAGAGGCTTTATGGGTGAGCCGCATGAAGGGAGGCCAGGTAGGGGTGGGTTTCATGAGAACCCATCCACCTGCATATGTGAAAATTCTCAGGCTAAAGTCAAGAGAGATGTGGAACCTAGAAAATACGGCAAGGGTAGTAATGTAACAAGAAAAGATGAAGTAGAAGTCGATGTCCAAGACTCGGAAGATGATCCAGAATGGCCAGACTCTGATGAGGATGAAGATCTAAGTGTCCCGCTGGATAATGATCACTTTAACAGAACTTCAGAGGATTATGATACAGTAAACTCAGAGGAACCTGAATTGGAGGAGCTTATTTCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

377

Amino Acids

43.47

Weight (kDa)

8.01

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	2 - 232	1.1e-70	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20550 AT1G76270
fragaria_vesca	FvH4_2g37540 FvH4_2g37540 FvH4_2g37540
malus_domestica	MD08G1002700.v1.1 MD15G1002400.v1.1 MD15G1002500.v1.1
prunus_persica	Prupe.1G354800_v2.0.a1
pyrus_communis	pycom08g00230 pycom15g00140
rosa_chinensis	RchiOBHm_Chr6g0304211
rosa_laevigata	RLG00000011006
rosa_multiflora	Rmu_sc0023816.1_g000003 Rmu_ssc0000218.1_g000012
rosa_roxburghii	Rroxscaffold_7G00163970
rosa_rugosa	Rorug06G0328700
rosa_samantha	Rh6BG460100 Rh6CG455000 Rh6DG442000
rosa_wichuraiana	Rw6G038370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	884
Acc36I	ACCTGC	1 cut(s)	884
AccB1I	GGYRCC	1 cut(s)	505
AciI	CCGC	2 cut(s)	827, 1043
AclWI	GGATC	1 cut(s)	992
AcoI	YGGCCR	2 cut(s)	666, 1007
AcsI	RAATTY	1 cut(s)	889
AcuI	CTGAAG	1 cut(s)	1056
AcyI	GRCGYC	1 cut(s)	506
AfaI	GTAC	3 cut(s)	51, 121, 799
AfiI	CCNNNNNNNGG	3 cut(s)	833, 848, 988
AflIII	ACRYGT	1 cut(s)	498
AgsI	TTSAA	3 cut(s)	64, 260, 540
AjnI	CCWGG	1 cut(s)	841
AluBI	AGCT	4 cut(s)	82, 680, 779, 1120
AluI	AGCT	4 cut(s)	82, 680, 779, 1120
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	2 cut(s)	297, 539
AlwI	GGATC	1 cut(s)	992
AlwNI	CAGNNNCTG	1 cut(s)	1016
AoxI	GGCC	3 cut(s)	666, 839, 1007
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	1 cut(s)	889
AspLEI	GCGC	1 cut(s)	508
AsuHPI	GGTGA	2 cut(s)	206, 833
AxyI	CCTNAGG	1 cut(s)	251
BalI	TGGCCA	2 cut(s)	668, 1009
BanI	GGYRCC	1 cut(s)	505
BbsI	GAAGAC	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	1 cut(s)	589
BccI	CCATC	1 cut(s)	877
BceAI	ACGGC	1 cut(s)	949
BciT130I	CCWGG	1 cut(s)	843
BclI	TGATCA	1 cut(s)	1054
BcoDI	GTCTC	2 cut(s)	297, 539
BfaI	CTAG	4 cut(s)	47, 789, 924, 1132
BfoI	RGCGCY	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	884
BglI	GCCNNNNNGGC	1 cut(s)	382
BglII	AGATCT	1 cut(s)	1030
BisI	GCNGC	2 cut(s)	603, 827
BlsI	GCNGC	2 cut(s)	604, 828
Bme1390I	CCNGG	1 cut(s)	843
BmiI	GGNNCC	4 cut(s)	507, 573, 921, 1104
BmrFI	CCNGG	1 cut(s)	843
BmsI	GCATC	4 cut(s)	131, 275, 479, 794
BpiI	GAAGAC	1 cut(s)	501
BpmI	CTGGAG	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	772
Bsa29I	ATCGAT	1 cut(s)	742
BsaBI	GATNNNNATC	2 cut(s)	1029, 1053
BsaHI	GRCGYC	1 cut(s)	506
BsaJI	CCNNGG	2 cut(s)	11, 377
BsaXI	ACNNNNNCTCC	2 cut(s)	829, 859
Bsc4I	CCNNNNNNNGG	3 cut(s)	833, 848, 988
Bse21I	CCTNAGG	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	242
Bse8I	GATNNNNATC	2 cut(s)	1029, 1053
BseBI	CCWGG	1 cut(s)	843
BseCI	ATCGAT	1 cut(s)	742
BseDI	CCNNGG	2 cut(s)	11, 377
BseGI	GGATG	4 cut(s)	225, 290, 869, 1030
BseJI	GATNNNNATC	2 cut(s)	1029, 1053
BseLI	CCNNNNNNNGG	3 cut(s)	833, 848, 988
BseMI	GCAATG	1 cut(s)	242
BseMII	CTCAG	4 cut(s)	165, 242, 908, 1110
BseRI	GAGGAG	3 cut(s)	315, 578, 1130
BseXI	GCAGC	1 cut(s)	589
BshFI	GGCC	3 cut(s)	668, 841, 1009
BshNI	GGYRCC	1 cut(s)	505
BshVI	ATCGAT	1 cut(s)	742
BsiHKAI	GWGCWC	1 cut(s)	436
BslFI	GGGAC	2 cut(s)	381, 1025
BslI	CCNNNNNNNGG	3 cut(s)	833, 848, 988
BsmAI	GTCTC	2 cut(s)	297, 539
BsmFI	GGGAC	2 cut(s)	381, 1025
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	3 cut(s)	668, 841, 1009
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	3 cut(s)	997, 1030, 1054
BspACI	CCGC	2 cut(s)	827, 1043
BspANI	GGCC	3 cut(s)	668, 841, 1009
BspCNI	CTCAG	4 cut(s)	166, 243, 907, 1109
BspDI	ATCGAT	1 cut(s)	742
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	4 cut(s)	507, 573, 921, 1104
BspMI	ACCTGC	1 cut(s)	884
BspPI	GGATC	1 cut(s)	992
BspT107I	GGYRCC	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	242
BssECI	CCNNGG	2 cut(s)	11, 377
BssMI	GATC	3 cut(s)	997, 1030, 1054
BssNI	GRCGYC	1 cut(s)	506
BssT1I	CCWWGG	2 cut(s)	11, 377
Bst2UI	CCWGG	1 cut(s)	843
Bst4CI	ACNGT	2 cut(s)	659, 1090
Bst6I	CTCTTC	2 cut(s)	332, 595
BstACI	GRCGYC	1 cut(s)	506
BstC8I	GCNNGC	3 cut(s)	72, 230, 273
BstDEI	CTNAG	5 cut(s)	174, 251, 894, 1034, 1096
BstF5I	GGATG	4 cut(s)	225, 290, 869, 1030
BstH2I	RGCGCY	1 cut(s)	509
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	3 cut(s)	1000, 1033, 1057
BstMAI	GTCTC	2 cut(s)	297, 539
BstMBI	GATC	3 cut(s)	997, 1030, 1054
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstNI	CCWGG	1 cut(s)	843
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	841
BstV1I	GCAGC	1 cut(s)	589
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	1 cut(s)	1030
BstYI	RGATCY	1 cut(s)	1030
Bsu15I	ATCGAT	1 cut(s)	742
Bsu36I	CCTNAGG	1 cut(s)	251
BsuRI	GGCC	3 cut(s)	668, 841, 1009
BsuTUI	ATCGAT	1 cut(s)	742
BtsCI	GGATG	4 cut(s)	225, 290, 869, 1030
BtsI	GCAGTG	1 cut(s)	454
BtsIMutI	CAGTG	1 cut(s)	454
BveI	ACCTGC	1 cut(s)	884
Cac8I	GCNNGC	3 cut(s)	72, 230, 273
CaiI	CAGNNNCTG	1 cut(s)	1016
CciI	TCATGA	1 cut(s)	859
CfoI	GCGC	1 cut(s)	508
ClaI	ATCGAT	1 cut(s)	742
Csp6I	GTAC	3 cut(s)	50, 120, 798
CviAII	CATG	6 cut(s)	71, 158, 386, 598, 830, 860
CviQI	GTAC	3 cut(s)	50, 120, 798
DdeI	CTNAG	5 cut(s)	174, 251, 894, 1034, 1096
DinI	GGCGCC	1 cut(s)	507
DpnI	GATC	3 cut(s)	999, 1032, 1056
DpnII	GATC	3 cut(s)	997, 1030, 1054
DraI	TTTAAA	1 cut(s)	165
EaeI	YGGCCR	2 cut(s)	666, 1007
Eam1104I	CTCTTC	2 cut(s)	332, 595
EarI	CTCTTC	2 cut(s)	332, 595
Eco130I	CCWWGG	2 cut(s)	11, 377
Eco57I	CTGAAG	1 cut(s)	1056
Eco81I	CCTNAGG	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	841
EcoT14I	CCWWGG	2 cut(s)	11, 377
EgeI	GGCGCC	1 cut(s)	507
EheI	GGCGCC	1 cut(s)	507
ErhI	CCWWGG	2 cut(s)	11, 377
FaeI	CATG	6 cut(s)	74, 161, 389, 601, 833, 863
FaqI	GGGAC	2 cut(s)	381, 1025
FatI	CATG	6 cut(s)	70, 157, 385, 597, 829, 859
FauI	CCCGC	1 cut(s)	1050
FauNDI	CATATG	1 cut(s)	881
FbaI	TGATCA	1 cut(s)	1054
Fnu4HI	GCNGC	2 cut(s)	603, 827
FokI	GGATG	4 cut(s)	232, 297, 856, 1037
Fsp4HI	GCNGC	2 cut(s)	603, 827
FspBI	CTAG	4 cut(s)	47, 789, 924, 1132
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	2 cut(s)	603, 827
GsuI	CTGGAG	1 cut(s)	390
HaeII	RGCGCY	1 cut(s)	509
HaeIII	GGCC	3 cut(s)	668, 841, 1009
HhaI	GCGC	1 cut(s)	508
Hin1I	GRCGYC	1 cut(s)	506
Hin1II	CATG	6 cut(s)	74, 161, 389, 601, 833, 863
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HindIII	AAGCTT	1 cut(s)	777
HinfI	GANTC	3 cut(s)	40, 986, 1013
HphI	GGTGA	2 cut(s)	206, 833
Hpy166II	GTNNAC	2 cut(s)	171, 1093
Hpy188I	TCNGA	7 cut(s)	39, 423, 991, 1018, 1075, 1099, 1129
Hpy188III	TCNNGA	7 cut(s)	282, 407, 608, 751, 860, 907, 1001
Hpy8I	GTNNAC	2 cut(s)	171, 1093
HpyAV	CCTTC	2 cut(s)	681, 827
HpyCH4III	ACNGT	2 cut(s)	659, 1090
HpyCH4IV	ACGT	1 cut(s)	500
HpyCH4V	TGCA	8 cut(s)	107, 130, 144, 247, 275, 329, 785, 879
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpyF3I	CTNAG	5 cut(s)	174, 251, 894, 1034, 1096
HpySE526I	ACGT	1 cut(s)	500
Hsp92I	GRCGYC	1 cut(s)	506
Hsp92II	CATG	6 cut(s)	74, 161, 389, 601, 833, 863
HspAI	GCGC	1 cut(s)	506
KasI	GGCGCC	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	1054
Kzo9I	GATC	3 cut(s)	997, 1030, 1054
LmnI	GCTCC	1 cut(s)	1117
Lsp1109I	GCAGC	1 cut(s)	589
LweI	GCATC	4 cut(s)	131, 275, 479, 794
MaeI	CTAG	4 cut(s)	47, 789, 924, 1132
MaeII	ACGT	1 cut(s)	500
MaeIII	GTNAC	3 cut(s)	351, 643, 949
MalI	GATC	3 cut(s)	999, 1032, 1056
MboI	GATC	3 cut(s)	997, 1030, 1054
MboII	GAAGA	6 cut(s)	349, 422, 506, 582, 1004, 1040
MflI	RGATCY	1 cut(s)	1030
MhlI	GDGCHC	1 cut(s)	436
MlsI	TGGCCA	2 cut(s)	668, 1009
MluCI	AATT	4 cut(s)	134, 151, 889, 1109
MluNI	TGGCCA	2 cut(s)	668, 1009
Mly113I	GGCGCC	1 cut(s)	506
MlyI	GAGTC	3 cut(s)	34, 980, 1007
MmeI	TCCRAC	1 cut(s)	549
Mox20I	TGGCCA	2 cut(s)	668, 1009
MscI	TGGCCA	2 cut(s)	668, 1009
MseI	TTAA	3 cut(s)	164, 513, 1062
MslI	CAYNNNNRTG	1 cut(s)	462
Msp20I	TGGCCA	2 cut(s)	668, 1009
MspA1I	CMGCKG	1 cut(s)	1045
MspR9I	CCNGG	1 cut(s)	843
Mva1269I	GAATGC	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	843
MwoI	GCNNNNNNNGC	1 cut(s)	382
NarI	GGCGCC	1 cut(s)	506
NdeI	CATATG	1 cut(s)	881
NdeII	GATC	3 cut(s)	997, 1030, 1054
NlaIII	CATG	6 cut(s)	74, 161, 389, 601, 833, 863
NlaIV	GGNNCC	4 cut(s)	507, 573, 921, 1104
NmuCI	GTSAC	1 cut(s)	643
NspI	RCATGY	1 cut(s)	74
PaeI	GCATGC	1 cut(s)	74
PagI	TCATGA	1 cut(s)	859
PaqCI	CACCTGC	1 cut(s)	884
PctI	GAATGC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	604, 828
PleI	GAGTC	3 cut(s)	34, 980, 1007
PluTI	GGCGCC	1 cut(s)	509
PpsI	GAGTC	3 cut(s)	34, 980, 1007
Psp6I	CCWGG	1 cut(s)	841
PspGI	CCWGG	1 cut(s)	841
PspN4I	GGNNCC	4 cut(s)	507, 573, 921, 1104
PstNI	CAGNNNCTG	1 cut(s)	1016
PsuI	RGATCY	1 cut(s)	1030
RsaI	GTAC	3 cut(s)	51, 121, 799
RsaNI	GTAC	3 cut(s)	50, 120, 798
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	3 cut(s)	164, 513, 1062
SatI	GCNGC	2 cut(s)	603, 827
Sau3AI	GATC	3 cut(s)	997, 1030, 1054
SchI	GAGTC	3 cut(s)	34, 980, 1007
ScrFI	CCNGG	1 cut(s)	843
SduI	GDGCHC	1 cut(s)	436
SfaNI	GCATC	4 cut(s)	131, 275, 479, 794
SfoI	GGCGCC	1 cut(s)	507
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	751
SmoI	CTYRAG	1 cut(s)	751
SphI	GCATGC	1 cut(s)	74
Sse9I	AATT	4 cut(s)	134, 151, 889, 1109
SsiI	CCGC	2 cut(s)	827, 1043
SspDI	GGCGCC	1 cut(s)	505
SspI	AATATT	1 cut(s)	675
SspMI	CTAG	4 cut(s)	47, 789, 924, 1132
StyD4I	CCNGG	1 cut(s)	841
StyI	CCWWGG	2 cut(s)	11, 377
TaaI	ACNGT	2 cut(s)	659, 1090
TaiI	ACGT	1 cut(s)	503
TaqI	TCGA	3 cut(s)	211, 742, 975
TasI	AATT	4 cut(s)	134, 151, 889, 1109
TauI	GCSGC	1 cut(s)	829
Tru1I	TTAA	3 cut(s)	164, 513, 1062
Tru9I	TTAA	3 cut(s)	164, 513, 1062
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	9 cut(s)	197, 236, 446, 573, 642, 846, 848, 978, 1041
TspGWI	ACGGA	2 cut(s)	199, 349
TspRI	CASTG	1 cut(s)	454
XapI	RAATTY	1 cut(s)	889
XceI	RCATGY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XspI	CTAG	4 cut(s)	47, 789, 924, 1132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.