Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014345

Physical Location & Seq

Genomic Coordinates Forward (+)

7649194 .. 7651816

Gene Structure 2623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G21760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGACTTCAGATGCTCTCACTATACCATCTGAGCTTGAATCTGCCTTGCGGCTCAGGACTGTACAATACTTTATTACAAAAAGGCCTTGGCTTGATCTTTATGGAGTCCATGTGAGGCCTGTGCCACCATTCGGAAGTACAAGCCGTAAACCTCATTTTGATCCAGCTTTGATTCATCGTTGCTTGCCTGATGAGCTTCTTTTCGAGGTGTTTGCTCGGATGATGCCTTATGACTTAGGTAGAGCATCTTGTGTTTGTAGAAAGTGGAGGTACACAGTTCGAAACCCTATGTTCTGGCGTAATGCCTGCTTGAAAGCTTGGCAGACTGCTGGGGTTATCGAAAACTATAAGATCTTGCAGTCTAAATATGATGGATCATGGAGGAAAATGTGGCTTCTTAGATCCAGAGTTCGTACTGATGGTCTTTATGTGAGTAGGAATACTTACATTCGAGCTGGAATTGCTGAGTGGAAGATTACAAATCCAGTTCACATTGTTTGTTACTACCGCTACATAAGGTTCTACCCTTCTGGCAGATTTCTTTACAAGAACTCTTCACAGAAATTGAAGGATGTTGCCAAGTACATGAACTTTAAGGCTTCTAAATCTGAAAATCTTTACAAAGGCACTTATACACTGTCAATGTCGGATGATAAGATCGAAGCAGCTGTTCTGTACCCAGGGACACGCCCTACTGTCTTAAGGATTCGTTTAAGGTTAAGAGGAACAGCTATTGGAGCGAATAACAGGATGGATTTGCTGTCACTTGTGACAAGTGGTGTGAACGATGAGGAAATAAGCAGCACAGAAGAAGACATTCTTGGGTTAGTTGAAGGTTGGGAAGACGATGAAACTCACAACCCGGATATACCTGCCGTCTCACACAAGAGGGGTATGACTGCATTCGTCTTCGTTCCTTTCGAAGAGGTTGACGAATCGGTTCTGAACTTGCCACCGGAGAAAATGGATTACTATGTCACTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006417 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

328

Amino Acids

38.04

Weight (kDa)

9.19

Isoelectric Point (pI)

52.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	61 - 100	5e-13	F-box domain
F-box-like	PF12937	61 - 104	1.7e-12	F-box-like
FBO_C	PF19270	116 - 328	3.2e-101	F-box only protein C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21760 AT1G21760
fragaria_vesca	FvH4_2g27090 FvH4_2g27090 FvH4_2g27090 FvH4_2g27090
malus_domestica	MD15G1347000.v1.1
prunus_persica	Prupe.1G494700_v2.0.a1
pyrus_communis	pycom15g31130
rosa_chinensis	RchiOBHm_Chr6g0295971
rosa_laevigata	RLG00000011751
rosa_multiflora	Rmu_sc0016143.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172010
rosa_rugosa	Rorug06G0255500
rosa_samantha	Rh6AG369200 Rh6DG369700
rosa_wichuraiana	Rw6G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	880
AciI	CCGC	2 cut(s)	49, 508
AclWI	GGATC	3 cut(s)	155, 382, 396
AfaI	GTAC	6 cut(s)	63, 139, 272, 415, 584, 677
AfiI	CCNNNNNNNGG	1 cut(s)	131
AflII	CTTAAG	1 cut(s)	700
AgsI	TTSAA	4 cut(s)	38, 313, 568, 833
AjnI	CCWGG	1 cut(s)	679
AjuI	GAANNNNNNNTTGG	2 cut(s)	804, 836
AluBI	AGCT	7 cut(s)	34, 167, 196, 317, 455, 668, 731
AluI	AGCT	7 cut(s)	34, 167, 196, 317, 455, 668, 731
Alw26I	GTCTC	1 cut(s)	883
AlwI	GGATC	3 cut(s)	155, 382, 396
AoxI	GGCC	2 cut(s)	83, 116
ApeKI	GCWGC	2 cut(s)	665, 801
Asp700I	GAANNNNTTC	2 cut(s)	816, 939
AsuC2I	CCSGG	1 cut(s)	863
AsuII	TTCGAA	2 cut(s)	280, 921
BbsI	GAAGAC	3 cut(s)	819, 849, 901
BbvI	GCAGC	2 cut(s)	677, 813
BccI	CCATC	4 cut(s)	34, 365, 413, 745
BceAI	ACGGC	2 cut(s)	129, 860
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	1 cut(s)	681
BcnI	CCSGG	1 cut(s)	863
BcoDI	GTCTC	1 cut(s)	883
BfrI	CTTAAG	1 cut(s)	700
BfuAI	ACCTGC	1 cut(s)	880
BglII	AGATCT	1 cut(s)	351
BisI	GCNGC	3 cut(s)	50, 666, 802
BlsI	GCNGC	3 cut(s)	51, 667, 803
Bme1390I	CCNGG	2 cut(s)	681, 863
BmrFI	CCNGG	2 cut(s)	681, 863
BmsI	GCATC	2 cut(s)	213, 254
BpiI	GAAGAC	3 cut(s)	819, 849, 901
Bpu10I	CCTNAGC	1 cut(s)	53
Bpu14I	TTCGAA	2 cut(s)	280, 921
BpuMI	CCSGG	1 cut(s)	863
BsaJI	CCNNGG	3 cut(s)	86, 679, 680
BsaWI	WCCGGW	1 cut(s)	955
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse1I	ACTGG	2 cut(s)	485, 985
BseBI	CCWGG	1 cut(s)	681
BseDI	CCNNGG	3 cut(s)	86, 679, 680
BseGI	GGATG	4 cut(s)	225, 577, 655, 756
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	3 cut(s)	21, 67, 456
BseNI	ACTGG	2 cut(s)	485, 985
BseXI	GCAGC	2 cut(s)	677, 813
BseYI	CCCAGC	1 cut(s)	329
BshFI	GGCC	2 cut(s)	85, 118
BsiSI	CCGG	2 cut(s)	863, 956
BslFI	GGGAC	1 cut(s)	697
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	883
BsmBI	CGTCTC	1 cut(s)	883
BsmFI	GGGAC	1 cut(s)	697
BsmI	GAATGC	1 cut(s)	902
BsnI	GGCC	2 cut(s)	85, 118
Bsp119I	TTCGAA	2 cut(s)	280, 921
Bsp1407I	TGTACA	1 cut(s)	61
Bsp143I	GATC	6 cut(s)	94, 160, 351, 374, 401, 657
BspACI	CCGC	2 cut(s)	49, 508
BspANI	GGCC	2 cut(s)	85, 118
BspCNI	CTCAG	3 cut(s)	22, 66, 457
BspMI	ACCTGC	1 cut(s)	880
BspPI	GGATC	3 cut(s)	155, 382, 396
BspT104I	TTCGAA	2 cut(s)	280, 921
BspTI	CTTAAG	1 cut(s)	700
BsrGI	TGTACA	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	485, 985
BssECI	CCNNGG	3 cut(s)	86, 679, 680
BssMI	GATC	6 cut(s)	94, 160, 351, 374, 401, 657
BssT1I	CCWWGG	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	681
Bst4CI	ACNGT	4 cut(s)	61, 277, 639, 697
Bst6I	CTCTTC	2 cut(s)	559, 918
BstAFI	CTTAAG	1 cut(s)	700
BstAUI	TGTACA	1 cut(s)	61
BstBI	TTCGAA	2 cut(s)	280, 921
BstC8I	GCNNGC	2 cut(s)	185, 307
BstDEI	CTNAG	5 cut(s)	30, 53, 235, 398, 465
BstF5I	GGATG	4 cut(s)	225, 577, 655, 756
BstKTI	GATC	6 cut(s)	97, 163, 354, 377, 404, 660
BstMAI	GTCTC	1 cut(s)	883
BstMBI	GATC	6 cut(s)	94, 160, 351, 374, 401, 657
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 461, 737
BstNI	CCWGG	1 cut(s)	681
BstSCI	CCNGG	2 cut(s)	679, 861
BstV1I	GCAGC	2 cut(s)	677, 813
BstV2I	GAAGAC	3 cut(s)	819, 849, 901
BstX2I	RGATCY	2 cut(s)	351, 401
BstYI	RGATCY	2 cut(s)	351, 401
BsuRI	GGCC	2 cut(s)	85, 118
BtsCI	GGATG	4 cut(s)	225, 577, 655, 756
BtsIMutI	CAGTG	2 cut(s)	635, 978
BveI	ACCTGC	1 cut(s)	880
Cac8I	GCNNGC	2 cut(s)	185, 307
Csp6I	GTAC	6 cut(s)	62, 138, 271, 414, 583, 676
CviAII	CATG	3 cut(s)	110, 378, 586
CviQI	GTAC	6 cut(s)	62, 138, 271, 414, 583, 676
DdeI	CTNAG	5 cut(s)	30, 53, 235, 398, 465
DpnI	GATC	6 cut(s)	96, 162, 353, 376, 403, 659
DpnII	GATC	6 cut(s)	94, 160, 351, 374, 401, 657
Eam1104I	CTCTTC	2 cut(s)	559, 918
EarI	CTCTTC	2 cut(s)	559, 918
Eco130I	CCWWGG	1 cut(s)	86
Eco147I	AGGCCT	2 cut(s)	85, 118
EcoRII	CCWGG	1 cut(s)	679
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
Esp3I	CGTCTC	1 cut(s)	883
FaeI	CATG	3 cut(s)	113, 381, 589
FalI	AAGNNNNNCTT	2 cut(s)	804, 836
FaqI	GGGAC	1 cut(s)	697
FatI	CATG	3 cut(s)	109, 377, 585
Fnu4HI	GCNGC	3 cut(s)	50, 666, 802
FokI	GGATG	4 cut(s)	232, 584, 662, 763
Fsp4HI	GCNGC	3 cut(s)	50, 666, 802
GluI	GCNGC	3 cut(s)	50, 666, 802
GsaI	CCCAGC	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	85, 118
HapII	CCGG	2 cut(s)	863, 956
Hin1II	CATG	3 cut(s)	113, 381, 589
HincII	GTYRAC	1 cut(s)	931
HindII	GTYRAC	1 cut(s)	931
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	5 cut(s)	38, 105, 172, 706, 935
HpaII	CCGG	2 cut(s)	863, 956
Hpy166II	GTNNAC	5 cut(s)	149, 273, 490, 784, 931
Hpy188I	TCNGA	7 cut(s)	10, 31, 134, 219, 610, 649, 945
Hpy188III	TCNNGA	2 cut(s)	55, 405
Hpy8I	GTNNAC	5 cut(s)	149, 273, 490, 784, 931
HpyAV	CCTTC	3 cut(s)	537, 562, 827
HpyCH4III	ACNGT	4 cut(s)	61, 277, 639, 697
HpyCH4V	TGCA	2 cut(s)	358, 902
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 461, 737
HpyF3I	CTNAG	5 cut(s)	30, 53, 235, 398, 465
Hsp92II	CATG	3 cut(s)	113, 381, 589
Kzo9I	GATC	6 cut(s)	94, 160, 351, 374, 401, 657
LmnI	GCTCC	1 cut(s)	737
Lsp1109I	GCAGC	2 cut(s)	677, 813
LweI	GCATC	2 cut(s)	213, 254
MaeIII	GTNAC	4 cut(s)	500, 762, 769, 976
MalI	GATC	6 cut(s)	96, 162, 353, 376, 403, 659
MboI	GATC	6 cut(s)	94, 160, 351, 374, 401, 657
MboII	GAAGA	7 cut(s)	484, 546, 821, 824, 854, 901, 935
MflI	RGATCY	2 cut(s)	351, 401
MluCI	AATT	2 cut(s)	459, 563
MlyI	GAGTC	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	627
MnlI	CCTC	9 cut(s)	108, 162, 199, 261, 375, 716, 784, 882, 919
MroXI	GAANNNNTTC	2 cut(s)	816, 939
MseI	TTAA	4 cut(s)	594, 701, 713, 719
MspA1I	CMGCKG	1 cut(s)	668
MspCI	CTTAAG	1 cut(s)	700
MspI	CCGG	2 cut(s)	863, 956
MspR9I	CCNGG	2 cut(s)	681, 863
Mva1269I	GAATGC	1 cut(s)	902
MvaI	CCWGG	1 cut(s)	681
MwoI	GCNNNNNNNGC	3 cut(s)	193, 461, 737
NciI	CCSGG	1 cut(s)	863
NdeII	GATC	6 cut(s)	94, 160, 351, 374, 401, 657
NlaIII	CATG	3 cut(s)	113, 381, 589
NmuCI	GTSAC	3 cut(s)	762, 769, 976
NspV	TTCGAA	2 cut(s)	280, 921
PasI	CCCWGGG	1 cut(s)	680
PceI	AGGCCT	2 cut(s)	85, 118
PcsI	WCGNNNNNNNCGW	1 cut(s)	918
PctI	GAATGC	1 cut(s)	902
PdmI	GAANNNNTTC	2 cut(s)	816, 939
PfeI	GAWTC	4 cut(s)	38, 172, 706, 935
PkrI	GCNGC	3 cut(s)	51, 667, 803
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	679
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	679
PsuI	RGATCY	2 cut(s)	351, 401
PvuII	CAGCTG	1 cut(s)	668
RsaI	GTAC	6 cut(s)	63, 139, 272, 415, 584, 677
RsaNI	GTAC	6 cut(s)	62, 138, 271, 414, 583, 676
SaqAI	TTAA	4 cut(s)	594, 701, 713, 719
SatI	GCNGC	3 cut(s)	50, 666, 802
Sau3AI	GATC	6 cut(s)	94, 160, 351, 374, 401, 657
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	2 cut(s)	681, 863
SfaNI	GCATC	2 cut(s)	213, 254
SfuI	TTCGAA	2 cut(s)	280, 921
SmlI	CTYRAG	1 cut(s)	700
SmoI	CTYRAG	1 cut(s)	700
Sse9I	AATT	2 cut(s)	459, 563
SseBI	AGGCCT	2 cut(s)	85, 118
SsiI	CCGC	2 cut(s)	49, 508
StuI	AGGCCT	2 cut(s)	85, 118
StyD4I	CCNGG	2 cut(s)	679, 861
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	4 cut(s)	61, 277, 639, 697
TaqI	TCGA	6 cut(s)	204, 280, 339, 451, 660, 921
TasI	AATT	2 cut(s)	459, 563
TatI	WGTACW	3 cut(s)	61, 137, 582
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	4 cut(s)	38, 172, 706, 935
Tru1I	TTAA	4 cut(s)	594, 701, 713, 719
Tru9I	TTAA	4 cut(s)	594, 701, 713, 719
TscAI	CASTG	2 cut(s)	642, 985
TseFI	GTSAC	3 cut(s)	762, 769, 976
TseI	GCWGC	2 cut(s)	665, 801
Tsp45I	GTSAC	3 cut(s)	762, 769, 976
TspDTI	ATGAA	3 cut(s)	164, 602, 864
TspRI	CASTG	2 cut(s)	642, 985
Vha464I	CTTAAG	1 cut(s)	700
XmnI	GAANNNNTTC	2 cut(s)	816, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.