Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0014345

Physical Location & Seq

Genomic Coordinates Forward (+)

12328270 .. 12332358

Gene Structure 4089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00172010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCTTCAGATTTTGCTTTCAAAGTTCCAGCTGAACTTGAAGCGGCTTTGCGGTTGAACTCAGTTCATCACTATGTGACAAAAAGGCCGTGGCTTGACCTTTATGGAGTCAATGTTAGACCTGTTGCACCATTTGGAAGTATGAGTAGAAAAGCAAATGTTGATCCAGCACTGTTACACCAGTACTTGCCGGATGAGTTGCTCTTTGAGGTGTTTGCACGAATGACTCCATATGACATGGGAAGGGCATCTTGTGTTTGTCGAAAATGGAGATACACTATCCGTAATCCTGTGTTTTGGCGCATTGCATGCTTAAAAGCTTGGCAGCTTTCTGGAGTTGTTGAAAACTATAAGATTTTACAAGCAAAATATGAGAGTTCATGGAGAAAAATGTGGCTTCTAAGACCAAGGGTCCGCACTGATGGTCTGTATGTGAGTAGGAATACTTATATTCGCACTGGAGTTGCAGAATGGAAGGTCTCTAACCCAGTTCACTTGGTCTGCTACTATCGCTACATCAGATTCTATCCTTCTGGCCGATATCTTTATAAGAATTCATCTCTAAAAGTCAAGGATGTGGCAAAAATCATGAACATCCGTGCAGCCAAGGCAGACTCGGTTTTCAGTGGCCATTACTCATTGTCAGATGATAAGGTTGAAGCAGCGGTTTTGTATCCAGGCAGGCGTCCGACTGTGTTGAGAATCCGCCTAAGGTTAAGAGGAACAGTAACAGGGGCAAACAATCGTATGGATTTACTGTCACTTGTTACAAGTGGTGTGAACGATGATGAGGTCCGTGGCCCTGATGAGGATATCCTTGGGGTTGTTGAAGGATGGCAGGATGATGAGACTCACAACCCAGATGTGCCAGCTGTCTCACATACGAGGGGTCTAACACCTTTTGTCTTCATTCCGTTTGAAGAGGTGGATACATCATTTCTGAATCTACCTGTGGAAAAGATGGATTATTTTGTGCCCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006417 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

327

Amino Acids

37.64

Weight (kDa)

9.35

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	62 - 105	1.8e-11	F-box-like
F-box	PF00646	63 - 101	7.3e-12	F-box domain
FBO_C	PF19270	117 - 327	2.4e-104	F-box only protein C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21760 AT1G21760
fragaria_vesca	FvH4_2g27090 FvH4_2g27090 FvH4_2g27090 FvH4_2g27090
malus_domestica	MD15G1347000.v1.1
prunus_persica	Prupe.1G494700_v2.0.a1
pyrus_communis	pycom15g31130
rosa_chinensis	RchiOBHm_Chr6g0295971
rosa_laevigata	RLG00000011751
rosa_multiflora	Rmu_sc0016143.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172010
rosa_rugosa	Rorug06G0255500
rosa_samantha	Rh6AG369200 Rh6DG369700
rosa_wichuraiana	Rw6G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
AciI	CCGC	5 cut(s)	44, 52, 415, 665, 706
AclWI	GGATC	1 cut(s)	158
AcoI	YGGCCR	2 cut(s)	535, 628
AcsI	RAATTY	1 cut(s)	553
AcyI	GRCGYC	1 cut(s)	685
AdeI	CACNNNGTG	1 cut(s)	76
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	808
AgsI	TTSAA	7 cut(s)	22, 41, 58, 344, 659, 830, 920
AhdI	GACNNNNNGTC	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	676
AluBI	AGCT	4 cut(s)	32, 320, 328, 872
AluI	AGCT	4 cut(s)	32, 320, 328, 872
Alw26I	GTCTC	3 cut(s)	484, 842, 880
AlwI	GGATC	1 cut(s)	158
AoxI	GGCC	4 cut(s)	86, 535, 628, 799
ApeKI	GCWGC	3 cut(s)	325, 602, 662
ApoI	RAATTY	1 cut(s)	553
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	3 cut(s)	412, 793, 800
AsuC2I	CCSGG	1 cut(s)	978
AvaII	GGWCC	2 cut(s)	412, 793
AxyI	CCTNAGG	1 cut(s)	710
BaeGI	GKGCMC	1 cut(s)	978
BalI	TGGCCA	1 cut(s)	630
BbsI	GAAGAC	1 cut(s)	898
BbvI	GCAGC	3 cut(s)	337, 614, 674
BccI	CCATC	3 cut(s)	416, 828, 955
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	678
BciVI	GTATCC	2 cut(s)	684, 922
BcnI	CCSGG	1 cut(s)	978
BcoDI	GTCTC	3 cut(s)	484, 842, 880
BfuI	GTATCC	2 cut(s)	684, 922
BisI	GCNGC	4 cut(s)	45, 326, 603, 663
BlsI	GCNGC	4 cut(s)	46, 327, 604, 664
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	2 cut(s)	678, 978
Bme18I	GGWCC	2 cut(s)	412, 793
BmeRI	GACNNNNNGTC	1 cut(s)	410
BmgT120I	GGNCC	3 cut(s)	412, 793, 800
BmiI	GGNNCC	1 cut(s)	413
BmrFI	CCNGG	2 cut(s)	678, 978
BmrI	ACTGGG	1 cut(s)	482
BmsI	GCATC	1 cut(s)	257
BmuI	ACTGGG	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	898
BpmI	CTGGAG	2 cut(s)	354, 480
BpuMI	CCSGG	1 cut(s)	978
BsaHI	GRCGYC	1 cut(s)	685
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	5 cut(s)	89, 407, 606, 796, 817
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	808
Bse1I	ACTGG	3 cut(s)	181, 463, 488
Bse21I	CCTNAGG	1 cut(s)	710
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	678
BseDI	CCNNGG	5 cut(s)	89, 407, 606, 796, 817
BseGI	GGATG	5 cut(s)	199, 580, 594, 839, 847
BseLI	CCNNNNNNNGG	1 cut(s)	808
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	3 cut(s)	181, 463, 488
BseSI	GKGCMC	1 cut(s)	978
BseXI	GCAGC	3 cut(s)	337, 614, 674
BsgI	GTGCAG	1 cut(s)	621
BshFI	GGCC	4 cut(s)	88, 537, 630, 801
BsiSI	CCGG	2 cut(s)	191, 978
BslI	CCNNNNNNNGG	1 cut(s)	808
BsmAI	GTCTC	3 cut(s)	484, 842, 880
BsnI	GGCC	4 cut(s)	88, 537, 630, 801
Bso31I	GGTCTC	1 cut(s)	484
Bsp1286I	GDGCHC	1 cut(s)	978
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	5 cut(s)	44, 52, 415, 665, 706
BspANI	GGCC	4 cut(s)	88, 537, 630, 801
BspCNI	CTCAG	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	588
BspLI	GGNNCC	1 cut(s)	413
BspPI	GGATC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	484
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	3 cut(s)	181, 463, 488
BssECI	CCNNGG	5 cut(s)	89, 407, 606, 796, 817
BssMI	GATC	1 cut(s)	163
BssNI	GRCGYC	1 cut(s)	685
BssT1I	CCWWGG	3 cut(s)	407, 606, 817
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	4 cut(s)	174, 694, 727, 759
Bst6I	CTCTTC	1 cut(s)	915
BstACI	GRCGYC	1 cut(s)	685
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstC8I	GCNNGC	3 cut(s)	310, 683, 870
BstDEI	CTNAG	3 cut(s)	61, 401, 710
BstDSI	CCRYGG	2 cut(s)	89, 796
BstF5I	GGATG	5 cut(s)	199, 580, 594, 839, 847
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	3 cut(s)	484, 842, 880
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	3 cut(s)	309, 510, 608
BstNI	CCWGG	1 cut(s)	678
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	2 cut(s)	676, 976
BstSLI	GKGCMC	1 cut(s)	978
BstV1I	GCAGC	3 cut(s)	337, 614, 674
BstV2I	GAAGAC	1 cut(s)	898
Bsu36I	CCTNAGG	1 cut(s)	710
BsuI	GTATCC	2 cut(s)	684, 922
BsuRI	GGCC	4 cut(s)	88, 537, 630, 801
BtgI	CCRYGG	2 cut(s)	89, 796
BtsCI	GGATG	5 cut(s)	199, 580, 594, 839, 847
BtsIMutI	CAGTG	4 cut(s)	170, 417, 456, 631
Cac8I	GCNNGC	3 cut(s)	310, 683, 870
CciI	TCATGA	1 cut(s)	588
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	3 cut(s)	412, 793, 800
CseI	GACGC	1 cut(s)	674
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	4 cut(s)	238, 309, 381, 589
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	3 cut(s)	61, 401, 710
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
DraIII	CACNNNGTG	1 cut(s)	76
DriI	GACNNNNNGTC	1 cut(s)	410
EaeI	YGGCCR	2 cut(s)	535, 628
Eam1104I	CTCTTC	1 cut(s)	915
Eam1105I	GACNNNNNGTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	915
EciI	GGCGGA	1 cut(s)	695
Eco130I	CCWWGG	3 cut(s)	407, 606, 817
Eco31I	GGTCTC	1 cut(s)	484
Eco32I	GATATC	2 cut(s)	542, 814
Eco47I	GGWCC	2 cut(s)	412, 793
Eco81I	CCTNAGG	1 cut(s)	710
EcoRI	GAATTC	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	676
EcoRV	GATATC	2 cut(s)	542, 814
EcoT14I	CCWWGG	3 cut(s)	407, 606, 817
ErhI	CCWWGG	3 cut(s)	407, 606, 817
FaeI	CATG	4 cut(s)	241, 312, 384, 592
FalI	AAGNNNNNCTT	2 cut(s)	235, 267
FatI	CATG	4 cut(s)	237, 308, 380, 588
FauNDI	CATATG	1 cut(s)	232
Fnu4HI	GCNGC	4 cut(s)	45, 326, 603, 663
FokI	GGATG	5 cut(s)	206, 581, 587, 846, 854
Fsp4HI	GCNGC	4 cut(s)	45, 326, 603, 663
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	4 cut(s)	45, 326, 603, 663
GsuI	CTGGAG	2 cut(s)	354, 480
HaeIII	GGCC	4 cut(s)	88, 537, 630, 801
HapII	CCGG	2 cut(s)	191, 978
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	1 cut(s)	303
Hin1I	GRCGYC	1 cut(s)	685
Hin1II	CATG	4 cut(s)	241, 312, 384, 592
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	7 cut(s)	108, 226, 522, 614, 702, 850, 943
HpaII	CCGG	2 cut(s)	191, 978
Hpy166II	GTNNAC	2 cut(s)	493, 781
Hpy188I	TCNGA	5 cut(s)	10, 521, 646, 690, 942
Hpy188III	TCNNGA	2 cut(s)	333, 589
Hpy8I	GTNNAC	2 cut(s)	493, 781
HpyAV	CCTTC	4 cut(s)	237, 469, 540, 824
HpyCH4III	ACNGT	4 cut(s)	174, 694, 727, 759
HpyCH4V	TGCA	5 cut(s)	128, 218, 308, 467, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	309, 510, 608
HpyF3I	CTNAG	3 cut(s)	61, 401, 710
Hsp92I	GRCGYC	1 cut(s)	685
Hsp92II	CATG	4 cut(s)	241, 312, 384, 592
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	163
Lsp1109I	GCAGC	3 cut(s)	337, 614, 674
LweI	GCATC	1 cut(s)	257
MaeIII	GTNAC	5 cut(s)	76, 174, 727, 759, 766
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	2 cut(s)	898, 932
MhlI	GDGCHC	1 cut(s)	978
MlsI	TGGCCA	1 cut(s)	630
MluCI	AATT	1 cut(s)	553
MluNI	TGGCCA	1 cut(s)	630
MlyI	GAGTC	4 cut(s)	117, 220, 608, 844
MmeI	TCCRAC	1 cut(s)	713
MnlI	CCTC	6 cut(s)	202, 713, 784, 802, 879, 916
Mox20I	TGGCCA	1 cut(s)	630
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	2 cut(s)	314, 716
MslI	CAYNNNNRTG	1 cut(s)	72
Msp20I	TGGCCA	1 cut(s)	630
MspA1I	CMGCKG	3 cut(s)	32, 665, 872
MspI	CCGG	2 cut(s)	191, 978
MspR9I	CCNGG	2 cut(s)	678, 978
MvaI	CCWGG	1 cut(s)	678
MwoI	GCNNNNNNNGC	3 cut(s)	309, 510, 608
NciI	CCSGG	1 cut(s)	978
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	4 cut(s)	241, 312, 384, 592
NlaIV	GGNNCC	1 cut(s)	413
NmuCI	GTSAC	2 cut(s)	76, 759
NspI	RCATGY	1 cut(s)	312
PaeI	GCATGC	1 cut(s)	312
PagI	TCATGA	1 cut(s)	588
PfeI	GAWTC	3 cut(s)	522, 702, 943
PkrI	GCNGC	4 cut(s)	46, 327, 604, 664
PleI	GAGTC	4 cut(s)	116, 220, 608, 844
PpsI	GAGTC	4 cut(s)	116, 220, 608, 844
PsiI	TTATAA	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	676
PspGI	CCWGG	1 cut(s)	676
PspN4I	GGNNCC	1 cut(s)	413
PspPI	GGNCC	3 cut(s)	412, 793, 800
PvuII	CAGCTG	2 cut(s)	32, 872
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	314, 716
SatI	GCNGC	4 cut(s)	45, 326, 603, 663
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	3 cut(s)	412, 793, 800
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	4 cut(s)	117, 220, 608, 844
ScrFI	CCNGG	2 cut(s)	678, 978
SduI	GDGCHC	1 cut(s)	978
SfaNI	GCATC	1 cut(s)	257
SinI	GGWCC	2 cut(s)	412, 793
SmiMI	CAYNNNNRTG	1 cut(s)	72
SphI	GCATGC	1 cut(s)	312
Sse9I	AATT	1 cut(s)	553
SsiI	CCGC	5 cut(s)	44, 52, 415, 665, 706
StyD4I	CCNGG	2 cut(s)	676, 976
StyI	CCWWGG	3 cut(s)	407, 606, 817
TaaI	ACNGT	4 cut(s)	174, 694, 727, 759
TaqI	TCGA	1 cut(s)	262
TasI	AATT	1 cut(s)	553
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	3 cut(s)	522, 702, 943
Tru1I	TTAA	2 cut(s)	314, 716
Tru9I	TTAA	2 cut(s)	314, 716
TscAI	CASTG	4 cut(s)	177, 424, 463, 631
TseFI	GTSAC	2 cut(s)	76, 759
TseI	GCWGC	3 cut(s)	325, 602, 662
Tsp45I	GTSAC	2 cut(s)	76, 759
TspDTI	ATGAA	5 cut(s)	56, 369, 546, 605, 898
TspGWI	ACGGA	4 cut(s)	272, 587, 785, 903
TspRI	CASTG	4 cut(s)	177, 424, 463, 631
VpaK11BI	GGWCC	2 cut(s)	412, 793
XapI	RAATTY	1 cut(s)	553
XceI	RCATGY	1 cut(s)	312
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.