Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014345

Physical Location & Seq

Genomic Coordinates Forward (+)

41092607 .. 41097637

Gene Structure 5031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G494700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGGTCAAATTTTTTTAAAGTCGGTTAAAAAAAACGGTCGTATATCACCTAAGTCTCTGGCCAATCTTCGTCCTCTGTCGTTACTGTTTTTCCCCCATTTTCCCGAGAAAATCGGCAGCAAAGGCTTCATTTTTGCCCGGAGGAAAGAACCAACCTTCATTCTCATGGCTTCAGATTTTGCTTTCAAAGTTCCAGCTGAACTTGAATCGGCTTTGCGGTTGAACACCGTTCAGTACTATATAACTAAGAGGCCGTGGCTTGATCTTTATGGAATCAATGTGAGACCTGTTGCACCAGTTGGAAGTACGAGTAGAAAAGTACATGTTGATCCAGCGCTGTTGCACCGTACGTTGCCGGATGAGCTGCTCTATGAGGTTTTTGCACGAATGAGTCCATATGACTTGGGAAGGGCAGCTTGTGTTTGTCGCAAATGGAGATACACTATTCGTAACCCTGTTTTTTGGCGCATTGCATGCTTAAAGGCTTGGCAGCTCTCTGGAGTGGTTGAAAACTATAAGATTCTACAAGCAAAGTACGACACTTCGTGGAGAAAAATGTGGCTTCTAAGACCAAGGATTCGCACGGATGGTCTGTATGTGAGCAGGAATACCTATATTCGTACTGGAATTGCAGAATGGAAGATCACTAACCCAGTTCACTTGGTGTGCTATTACCGGTACATGAGATTTTTTCCTTCTGGCCGATTTCTGTACAAGAATTCATCTCAAAAACTCAAGGATGTAGCAAAATTCATGAATTTCCGTTCAGCCAAGGCAGACTCTGTTTTCAGTGGCCATTACACATTCTCAGATGATAAGGTTGAAGCTGCAGTTTTGTATCCAGGCATGCGCCCTACTGTGTTGAGAATCCGCCTAAGGTTAAGAGGAACAACAGCAGGGGCAAACAATAGGATGGATTTACTCTCACTTGTTACAAGTGGTGTGAACGATAATGAGGTTTGTGGGCCTGATGAGGACATCCTTGGGGTGGTTGAAGGGTGGCAGGATGACGAGACTCACAACCCAGATGTGCCGGCTGTCTCACACAAGAGGGGTCTAACACCCTTTGTCTTTGTTCCATTTGAGGAGGTAGAGACATCGTTTCTGAATCTGCCCGTGGAGAAGATGGATTATTTCGTACCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006417 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

383

Amino Acids

44.03

Weight (kDa)

9.74

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21760 AT1G21760
fragaria_vesca	FvH4_2g27090 FvH4_2g27090 FvH4_2g27090 FvH4_2g27090
malus_domestica	MD15G1347000.v1.1
prunus_persica	Prupe.1G494700_v2.0.a1
pyrus_communis	pycom15g31130
rosa_chinensis	RchiOBHm_Chr6g0295971
rosa_laevigata	RLG00000011751
rosa_multiflora	Rmu_sc0016143.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172010
rosa_rugosa	Rorug06G0255500
rosa_samantha	Rh6AG369200 Rh6DG369700
rosa_wichuraiana	Rw6G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	217, 871
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	3 cut(s)	60, 700, 793
AcsI	RAATTY	4 cut(s)	9, 718, 749, 757
AcuI	CTGAAG	1 cut(s)	156
AdeI	CACNNNGTG	2 cut(s)	546, 664
AfaI	GTAC	9 cut(s)	236, 307, 321, 349, 536, 622, 680, 713, 1140
AfeI	AGCGCT	1 cut(s)	336
AfiI	CCNNNNNNNGG	1 cut(s)	988
AflIII	ACRYGT	1 cut(s)	322
AgeI	ACCGGT	1 cut(s)	675
AgsI	TTSAA	6 cut(s)	187, 206, 223, 509, 824, 995
AjnI	CCWGG	2 cut(s)	841, 1141
AluBI	AGCT	5 cut(s)	197, 364, 416, 493, 827
AluI	AGCT	5 cut(s)	197, 364, 416, 493, 827
Alw26I	GTCTC	5 cut(s)	60, 277, 1007, 1045, 1088
AlwI	GGATC	1 cut(s)	323
AlwNI	CAGNNNCTG	1 cut(s)	782
Ama87I	CYCGRG	1 cut(s)	104
Aor51HI	AGCGCT	1 cut(s)	336
AoxI	GGCC	5 cut(s)	60, 251, 700, 793, 965
ApeKI	GCWGC	5 cut(s)	117, 364, 413, 490, 827
ApoI	RAATTY	4 cut(s)	9, 718, 749, 757
ArsI	GACNNNNNNTTYG	2 cut(s)	561, 593
AsiGI	ACCGGT	1 cut(s)	675
AspLEI	GCGC	3 cut(s)	337, 468, 852
AspS9I	GGNCC	1 cut(s)	965
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	39
AvaI	CYCGRG	1 cut(s)	104
AxyI	CCTNAGG	1 cut(s)	875
BalI	TGGCCA	2 cut(s)	62, 795
BbvI	GCAGC	5 cut(s)	129, 351, 425, 502, 814
BccI	CCATC	3 cut(s)	581, 907, 1120
BceAI	ACGGC	1 cut(s)	238
BciT130I	CCWGG	2 cut(s)	843, 1143
BciVI	GTATCC	1 cut(s)	849
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	5 cut(s)	60, 277, 1007, 1045, 1088
BfmI	CTRYAG	1 cut(s)	828
BfoI	RGCGCY	1 cut(s)	338
BfuI	GTATCC	1 cut(s)	849
BisI	GCNGC	5 cut(s)	118, 365, 414, 491, 828
BlsI	GCNGC	5 cut(s)	119, 366, 415, 492, 829
BmcAI	AGTACT	1 cut(s)	236
Bme1390I	CCNGG	3 cut(s)	139, 843, 1143
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	965
BmrFI	CCNGG	3 cut(s)	139, 843, 1143
BmrI	ACTGGG	1 cut(s)	647
BmuI	ACTGGG	1 cut(s)	647
BpmI	CTGGAG	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	719
BpuMI	CCSGG	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	277
BsaJI	CCNNGG	5 cut(s)	254, 572, 771, 982, 1116
BsaWI	WCCGGW	1 cut(s)	675
Bsc4I	CCNNNNNNNGG	1 cut(s)	988
Bse118I	RCCGGY	2 cut(s)	675, 1033
Bse1I	ACTGG	3 cut(s)	296, 628, 653
Bse21I	CCTNAGG	1 cut(s)	875
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	2 cut(s)	843, 1143
BseDI	CCNNGG	5 cut(s)	254, 572, 771, 982, 1116
BseGI	GGATG	6 cut(s)	364, 592, 745, 918, 978, 1012
BseLI	CCNNNNNNNGG	1 cut(s)	988
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	822
BseNI	ACTGG	3 cut(s)	296, 628, 653
BseRI	GAGGAG	1 cut(s)	1100
BseXI	GCAGC	5 cut(s)	129, 351, 425, 502, 814
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	5 cut(s)	62, 253, 702, 795, 967
BshTI	ACCGGT	1 cut(s)	675
BsiEI	CGRYCG	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	4 cut(s)	139, 356, 676, 1034
BsiWI	CGTACG	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	988
BsmAI	GTCTC	5 cut(s)	60, 277, 1007, 1045, 1088
BsnI	GGCC	5 cut(s)	62, 253, 702, 795, 967
Bso31I	GGTCTC	1 cut(s)	277
BsoBI	CYCGRG	1 cut(s)	104
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	3 cut(s)	262, 328, 642
BspACI	CCGC	2 cut(s)	217, 871
BspANI	GGCC	5 cut(s)	62, 253, 702, 795, 967
BspCNI	CTCAG	1 cut(s)	821
BspHI	TCATGA	1 cut(s)	753
BspMAI	CTGCAG	1 cut(s)	832
BspPI	GGATC	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	468
BsrFI	RCCGGY	2 cut(s)	675, 1033
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	3 cut(s)	296, 628, 653
BssAI	RCCGGY	2 cut(s)	675, 1033
BssECI	CCNNGG	5 cut(s)	254, 572, 771, 982, 1116
BssMI	GATC	3 cut(s)	262, 328, 642
BssT1I	CCWWGG	3 cut(s)	572, 771, 982
Bst2UI	CCWGG	2 cut(s)	843, 1143
Bst4CI	ACNGT	5 cut(s)	38, 87, 229, 347, 859
BstAPI	GCANNNNNTGC	1 cut(s)	474
BstAUI	TGTACA	1 cut(s)	711
BstC8I	GCNNGC	3 cut(s)	475, 848, 1035
BstDEI	CTNAG	5 cut(s)	51, 246, 566, 808, 875
BstDSI	CCRYGG	2 cut(s)	254, 1116
BstF5I	GGATG	6 cut(s)	364, 592, 745, 918, 978, 1012
BstH2I	RGCGCY	1 cut(s)	338
BstHHI	GCGC	3 cut(s)	337, 468, 852
BstKTI	GATC	3 cut(s)	265, 331, 645
BstMAI	GTCTC	5 cut(s)	60, 277, 1007, 1045, 1088
BstMBI	GATC	3 cut(s)	262, 328, 642
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 361, 474
BstNI	CCWGG	2 cut(s)	843, 1143
BstNSI	RCATGY	3 cut(s)	326, 477, 850
BstSCI	CCNGG	3 cut(s)	137, 841, 1141
BstSFI	CTRYAG	1 cut(s)	828
BstV1I	GCAGC	5 cut(s)	129, 351, 425, 502, 814
Bsu36I	CCTNAGG	1 cut(s)	875
BsuI	GTATCC	1 cut(s)	849
BsuRI	GGCC	5 cut(s)	62, 253, 702, 795, 967
BtgI	CCRYGG	2 cut(s)	254, 1116
BtsCI	GGATG	6 cut(s)	364, 592, 745, 918, 978, 1012
BtsIMutI	CAGTG	1 cut(s)	796
Cac8I	GCNNGC	3 cut(s)	475, 848, 1035
CaiI	CAGNNNCTG	1 cut(s)	782
CciI	TCATGA	1 cut(s)	753
CfoI	GCGC	3 cut(s)	337, 468, 852
Cfr10I	RCCGGY	2 cut(s)	675, 1033
Cfr13I	GGNCC	1 cut(s)	965
Csp6I	GTAC	9 cut(s)	235, 306, 320, 348, 535, 621, 679, 712, 1139
CspAI	ACCGGT	1 cut(s)	675
CviAII	CATG	6 cut(s)	166, 323, 474, 682, 754, 847
CviQI	GTAC	9 cut(s)	235, 306, 320, 348, 535, 621, 679, 712, 1139
DdeI	CTNAG	5 cut(s)	51, 246, 566, 808, 875
DpnI	GATC	3 cut(s)	264, 330, 644
DpnII	GATC	3 cut(s)	262, 328, 642
DraI	TTTAAA	1 cut(s)	18
DraIII	CACNNNGTG	2 cut(s)	546, 664
EaeI	YGGCCR	3 cut(s)	60, 700, 793
EciI	GGCGGA	1 cut(s)	860
Eco130I	CCWWGG	3 cut(s)	572, 771, 982
Eco31I	GGTCTC	1 cut(s)	277
Eco47III	AGCGCT	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	156
Eco81I	CCTNAGG	1 cut(s)	875
Eco88I	CYCGRG	1 cut(s)	104
EcoRI	GAATTC	1 cut(s)	718
EcoRII	CCWGG	2 cut(s)	841, 1141
EcoT14I	CCWWGG	3 cut(s)	572, 771, 982
ErhI	CCWWGG	3 cut(s)	572, 771, 982
FaeI	CATG	6 cut(s)	169, 326, 477, 685, 757, 850
FalI	AAGNNNNNCTT	2 cut(s)	400, 432
FatI	CATG	6 cut(s)	165, 322, 473, 681, 753, 846
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	5 cut(s)	118, 365, 414, 491, 828
FokI	GGATG	6 cut(s)	371, 599, 752, 925, 965, 1019
Fsp4HI	GCNGC	5 cut(s)	118, 365, 414, 491, 828
GlaI	GCGC	3 cut(s)	336, 467, 851
GluI	GCNGC	5 cut(s)	118, 365, 414, 491, 828
GsuI	CTGGAG	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	338
HaeIII	GGCC	5 cut(s)	62, 253, 702, 795, 967
HapII	CCGG	4 cut(s)	139, 356, 676, 1034
HhaI	GCGC	3 cut(s)	337, 468, 852
Hin1II	CATG	6 cut(s)	169, 326, 477, 685, 757, 850
Hin6I	GCGC	3 cut(s)	335, 466, 850
HinP1I	GCGC	3 cut(s)	335, 466, 850
HinfI	GANTC	9 cut(s)	206, 273, 391, 520, 577, 779, 867, 1015, 1108
HpaII	CCGG	4 cut(s)	139, 356, 676, 1034
HphI	GGTGA	1 cut(s)	39
Hpy166II	GTNNAC	2 cut(s)	658, 946
Hpy188I	TCNGA	3 cut(s)	175, 811, 1107
Hpy188III	TCNNGA	3 cut(s)	104, 498, 754
Hpy8I	GTNNAC	2 cut(s)	658, 946
HpyAV	CCTTC	4 cut(s)	166, 402, 705, 989
HpyCH4III	ACNGT	5 cut(s)	38, 87, 229, 347, 859
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	6 cut(s)	293, 343, 383, 473, 632, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 361, 474
HpyF3I	CTNAG	5 cut(s)	51, 246, 566, 808, 875
HpySE526I	ACGT	1 cut(s)	350
Hsp92II	CATG	6 cut(s)	169, 326, 477, 685, 757, 850
HspAI	GCGC	3 cut(s)	335, 466, 850
KroI	GCCGGC	1 cut(s)	1033
KroNI	GCCGGC	1 cut(s)	1035
Kzo9I	GATC	3 cut(s)	262, 328, 642
Lsp1109I	GCAGC	5 cut(s)	129, 351, 425, 502, 814
MaeII	ACGT	1 cut(s)	350
MaeIII	GTNAC	3 cut(s)	81, 449, 931
MalI	GATC	3 cut(s)	264, 330, 644
MboI	GATC	3 cut(s)	262, 328, 642
MboII	GAAGA	3 cut(s)	59, 652, 1135
MlsI	TGGCCA	2 cut(s)	62, 795
MluCI	AATT	5 cut(s)	9, 627, 718, 749, 757
MluNI	TGGCCA	2 cut(s)	62, 795
MlyI	GAGTC	3 cut(s)	400, 773, 1009
MmeI	TCCRAC	1 cut(s)	280
Mox20I	TGGCCA	2 cut(s)	62, 795
MroNI	GCCGGC	1 cut(s)	1033
MscI	TGGCCA	2 cut(s)	62, 795
MseI	TTAA	4 cut(s)	17, 27, 479, 881
MslI	CAYNNNNRTG	1 cut(s)	164
Msp20I	TGGCCA	2 cut(s)	62, 795
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	4 cut(s)	139, 356, 676, 1034
MspR9I	CCNGG	3 cut(s)	139, 843, 1143
MvaI	CCWGG	2 cut(s)	843, 1143
MwoI	GCNNNNNNNGC	3 cut(s)	123, 361, 474
NaeI	GCCGGC	1 cut(s)	1035
NciI	CCSGG	1 cut(s)	139
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	3 cut(s)	262, 328, 642
NgoMIV	GCCGGC	1 cut(s)	1033
NlaIII	CATG	6 cut(s)	169, 326, 477, 685, 757, 850
NspI	RCATGY	3 cut(s)	326, 477, 850
PaeI	GCATGC	2 cut(s)	477, 850
PagI	TCATGA	1 cut(s)	753
PciI	ACATGT	1 cut(s)	322
PdiI	GCCGGC	1 cut(s)	1035
PfeI	GAWTC	6 cut(s)	206, 273, 520, 577, 867, 1108
Pfl23II	CGTACG	1 cut(s)	347
PinAI	ACCGGT	1 cut(s)	675
PkrI	GCNGC	5 cut(s)	119, 366, 415, 492, 829
PleI	GAGTC	3 cut(s)	399, 773, 1009
PpsI	GAGTC	3 cut(s)	399, 773, 1009
PscI	ACATGT	1 cut(s)	322
Psp6I	CCWGG	2 cut(s)	841, 1141
PspGI	CCWGG	2 cut(s)	841, 1141
PspLI	CGTACG	1 cut(s)	347
PspPI	GGNCC	1 cut(s)	965
PstI	CTGCAG	1 cut(s)	832
PstNI	CAGNNNCTG	1 cut(s)	782
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	9 cut(s)	236, 307, 321, 349, 536, 622, 680, 713, 1140
RsaNI	GTAC	9 cut(s)	235, 306, 320, 348, 535, 621, 679, 712, 1139
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	4 cut(s)	17, 27, 479, 881
SatI	GCNGC	5 cut(s)	118, 365, 414, 491, 828
Sau3AI	GATC	3 cut(s)	262, 328, 642
Sau96I	GGNCC	1 cut(s)	965
ScaI	AGTACT	1 cut(s)	236
SchI	GAGTC	3 cut(s)	400, 773, 1009
ScrFI	CCNGG	3 cut(s)	139, 843, 1143
SfcI	CTRYAG	1 cut(s)	828
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
SphI	GCATGC	2 cut(s)	477, 850
Sse9I	AATT	5 cut(s)	9, 627, 718, 749, 757
SsiI	CCGC	2 cut(s)	217, 871
StyD4I	CCNGG	3 cut(s)	137, 841, 1141
StyI	CCWWGG	3 cut(s)	572, 771, 982
TaaI	ACNGT	5 cut(s)	38, 87, 229, 347, 859
TaiI	ACGT	1 cut(s)	353
TasI	AATT	5 cut(s)	9, 627, 718, 749, 757
TatI	WGTACW	3 cut(s)	234, 319, 711
TfiI	GAWTC	6 cut(s)	206, 273, 520, 577, 867, 1108
Tru1I	TTAA	4 cut(s)	17, 27, 479, 881
Tru9I	TTAA	4 cut(s)	17, 27, 479, 881
TscAI	CASTG	1 cut(s)	796
TseI	GCWGC	5 cut(s)	117, 364, 413, 490, 827
TspDTI	ATGAA	5 cut(s)	118, 148, 711, 742, 770
TspGWI	ACGGA	2 cut(s)	599, 752
TspRI	CASTG	1 cut(s)	796
XapI	RAATTY	4 cut(s)	9, 718, 749, 757
XceI	RCATGY	3 cut(s)	326, 477, 850
ZrmI	AGTACT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.