Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016143.1

Orthogroup ID

OG0014345

Physical Location & Seq

Genomic Coordinates Forward (+)

4496 .. 7176

Gene Structure 2681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016143.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgactccatatgacatgggaagggcatcttgtgtttgtcgaaaatggagatacactatccgaaatcctgtgttttggcgcattgcatgcttaaaagcttggcagctttctggagttgttgaaaactataagattttacaagcaaaatatgagagttcatggagaaaaatgtggcttctaagaccaagggtccgcactgatggtctgtatgtgagtaggaatacttatattcgcactggagttgcagaatggaaggtctctaacccagttcacttggtctgctactatcgctacatcagattctatccttctggccgatttctttataagaattcatctctaaaagtcaaggatgtggcaaaaatcatgaacatccgtgcagccaaggcagactcggttttcagtggccattactcattatcagatgataaggttgaagcagcagttttgtatccaggcaggcgtccgactgtgttgagaatccgcctaagattaagaggaacagtgacaggggcaaacaatcgtatggatttactgtcacttgttacaagtggtgtgaacgatgatgaggtccgtggccctgatgaggatatccttgaggtggttgaaggatggcaggatgatgagactcacaacccagatgtgccagctgtctcacacacgaggggtctaacaccttttgtcttcattccgtttgaagaggtggatacatcatttctgaatctacctgtggaaaagatggattattttgtgcccggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006417 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

253

Amino Acids

29.28

Weight (kDa)

9.37

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21760 AT1G21760
fragaria_vesca	FvH4_2g27090 FvH4_2g27090 FvH4_2g27090 FvH4_2g27090
malus_domestica	MD15G1347000.v1.1
prunus_persica	Prupe.1G494700_v2.0.a1
pyrus_communis	pycom15g31130
rosa_chinensis	RchiOBHm_Chr6g0295971
rosa_laevigata	RLG00000011751
rosa_multiflora	Rmu_sc0016143.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172010
rosa_rugosa	Rorug06G0255500
rosa_samantha	Rh6AG369200 Rh6DG369700
rosa_wichuraiana	Rw6G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AciI	CCGC	2 cut(s)	193, 484
AcoI	YGGCCR	2 cut(s)	313, 406
AcsI	RAATTY	1 cut(s)	331
AcyI	GRCGYC	1 cut(s)	463
AfiI	CCNNNNNNNGG	2 cut(s)	586, 601
AgsI	TTSAA	4 cut(s)	122, 437, 608, 698
AhdI	GACNNNNNGTC	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	3 cut(s)	98, 106, 650
AluI	AGCT	3 cut(s)	98, 106, 650
Alw26I	GTCTC	3 cut(s)	262, 620, 658
AoxI	GGCC	3 cut(s)	313, 406, 577
ApeKI	GCWGC	3 cut(s)	103, 380, 440
ApoI	RAATTY	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	3 cut(s)	190, 571, 578
AsuC2I	CCSGG	1 cut(s)	756
AvaII	GGWCC	2 cut(s)	190, 571
BaeGI	GKGCMC	1 cut(s)	756
BalI	TGGCCA	1 cut(s)	408
BauI	CACGAG	1 cut(s)	661
BbsI	GAAGAC	1 cut(s)	676
BbvI	GCAGC	3 cut(s)	115, 392, 452
BccI	CCATC	3 cut(s)	194, 606, 733
BciT130I	CCWGG	1 cut(s)	456
BciVI	GTATCC	2 cut(s)	462, 700
BcnI	CCSGG	1 cut(s)	756
BcoDI	GTCTC	3 cut(s)	262, 620, 658
BfuI	GTATCC	2 cut(s)	462, 700
BisI	GCNGC	3 cut(s)	104, 381, 441
BlsI	GCNGC	3 cut(s)	105, 382, 442
Bme1390I	CCNGG	2 cut(s)	456, 756
Bme18I	GGWCC	2 cut(s)	190, 571
BmeRI	GACNNNNNGTC	1 cut(s)	188
BmgT120I	GGNCC	3 cut(s)	190, 571, 578
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	2 cut(s)	456, 756
BmrI	ACTGGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	35
BmuI	ACTGGG	1 cut(s)	260
BpiI	GAAGAC	1 cut(s)	676
BpmI	CTGGAG	2 cut(s)	132, 258
BpuEI	CTTGAG	1 cut(s)	617
BpuMI	CCSGG	1 cut(s)	756
BsaHI	GRCGYC	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	3 cut(s)	185, 384, 574
Bsc4I	CCNNNNNNNGG	2 cut(s)	586, 601
Bse1I	ACTGG	2 cut(s)	241, 266
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	3 cut(s)	185, 384, 574
BseGI	GGATG	4 cut(s)	358, 372, 617, 625
BseLI	CCNNNNNNNGG	2 cut(s)	586, 601
BseMI	GCAATG	1 cut(s)	81
BseNI	ACTGG	2 cut(s)	241, 266
BseSI	GKGCMC	1 cut(s)	756
BseXI	GCAGC	3 cut(s)	115, 392, 452
BsgI	GTGCAG	1 cut(s)	399
BshFI	GGCC	3 cut(s)	315, 408, 579
BsiSI	CCGG	1 cut(s)	756
BslI	CCNNNNNNNGG	2 cut(s)	586, 601
BsmAI	GTCTC	3 cut(s)	262, 620, 658
BsnI	GGCC	3 cut(s)	315, 408, 579
Bso31I	GGTCTC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	756
BspACI	CCGC	2 cut(s)	193, 484
BspANI	GGCC	3 cut(s)	315, 408, 579
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	241, 266
BssECI	CCNNGG	3 cut(s)	185, 384, 574
BssNI	GRCGYC	1 cut(s)	463
BssSI	CACGAG	1 cut(s)	661
BssT1I	CCWWGG	2 cut(s)	185, 384
Bst2BI	CACGAG	1 cut(s)	661
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	3 cut(s)	472, 505, 537
Bst6I	CTCTTC	1 cut(s)	693
BstACI	GRCGYC	1 cut(s)	463
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstC8I	GCNNGC	3 cut(s)	88, 461, 648
BstDEI	CTNAG	2 cut(s)	179, 488
BstDSI	CCRYGG	1 cut(s)	574
BstF5I	GGATG	4 cut(s)	358, 372, 617, 625
BstHHI	GCGC	1 cut(s)	81
BstMAI	GTCTC	3 cut(s)	262, 620, 658
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 288, 386
BstNI	CCWGG	1 cut(s)	456
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	2 cut(s)	454, 754
BstSLI	GKGCMC	1 cut(s)	756
BstV1I	GCAGC	3 cut(s)	115, 392, 452
BstV2I	GAAGAC	1 cut(s)	676
BsuI	GTATCC	2 cut(s)	462, 700
BsuRI	GGCC	3 cut(s)	315, 408, 579
BtgI	CCRYGG	1 cut(s)	574
BtsCI	GGATG	4 cut(s)	358, 372, 617, 625
BtsIMutI	CAGTG	4 cut(s)	195, 234, 409, 510
Cac8I	GCNNGC	3 cut(s)	88, 461, 648
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	3 cut(s)	190, 571, 578
CseI	GACGC	1 cut(s)	452
CviAII	CATG	4 cut(s)	16, 87, 159, 367
CviJI	RGCY	9 cut(s)	98, 106, 175, 315, 383, 408, 579, 650, 759
CviKI_1	RGCY	9 cut(s)	98, 106, 175, 315, 383, 408, 579, 650, 759
DdeI	CTNAG	2 cut(s)	179, 488
DriI	GACNNNNNGTC	1 cut(s)	188
EaeI	YGGCCR	2 cut(s)	313, 406
Eam1104I	CTCTTC	1 cut(s)	693
Eam1105I	GACNNNNNGTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	693
EciI	GGCGGA	1 cut(s)	473
Eco130I	CCWWGG	2 cut(s)	185, 384
Eco31I	GGTCTC	1 cut(s)	262
Eco32I	GATATC	1 cut(s)	592
Eco47I	GGWCC	2 cut(s)	190, 571
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	592
EcoT14I	CCWWGG	2 cut(s)	185, 384
ErhI	CCWWGG	2 cut(s)	185, 384
FaeI	CATG	4 cut(s)	19, 90, 162, 370
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FatI	CATG	4 cut(s)	15, 86, 158, 366
FauNDI	CATATG	1 cut(s)	10
Fnu4HI	GCNGC	3 cut(s)	104, 381, 441
FokI	GGATG	4 cut(s)	359, 365, 624, 632
Fsp4HI	GCNGC	3 cut(s)	104, 381, 441
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	3 cut(s)	104, 381, 441
GsuI	CTGGAG	2 cut(s)	132, 258
HaeIII	GGCC	3 cut(s)	315, 408, 579
HapII	CCGG	1 cut(s)	756
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	1 cut(s)	81
Hin1I	GRCGYC	1 cut(s)	463
Hin1II	CATG	4 cut(s)	19, 90, 162, 370
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	6 cut(s)	4, 300, 392, 480, 628, 721
HpaII	CCGG	1 cut(s)	756
Hpy166II	GTNNAC	2 cut(s)	271, 559
Hpy188I	TCNGA	5 cut(s)	62, 299, 424, 468, 720
Hpy188III	TCNNGA	2 cut(s)	111, 367
Hpy8I	GTNNAC	2 cut(s)	271, 559
HpyAV	CCTTC	4 cut(s)	15, 247, 318, 602
HpyCH4III	ACNGT	3 cut(s)	472, 505, 537
HpyCH4V	TGCA	3 cut(s)	86, 245, 380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 288, 386
HpyF3I	CTNAG	2 cut(s)	179, 488
Hsp92I	GRCGYC	1 cut(s)	463
Hsp92II	CATG	4 cut(s)	19, 90, 162, 370
HspAI	GCGC	1 cut(s)	79
Lsp1109I	GCAGC	3 cut(s)	115, 392, 452
LweI	GCATC	1 cut(s)	35
MaeIII	GTNAC	3 cut(s)	505, 537, 544
MboII	GAAGA	2 cut(s)	676, 710
MhlI	GDGCHC	1 cut(s)	756
MlsI	TGGCCA	1 cut(s)	408
MluCI	AATT	1 cut(s)	331
MluNI	TGGCCA	1 cut(s)	408
MlyI	GAGTC	2 cut(s)	386, 622
MmeI	TCCRAC	1 cut(s)	491
MnlI	CCTC	6 cut(s)	491, 562, 580, 592, 657, 694
Mox20I	TGGCCA	1 cut(s)	408
MscI	TGGCCA	1 cut(s)	408
MseI	TTAA	2 cut(s)	92, 494
Msp20I	TGGCCA	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	650
MspI	CCGG	1 cut(s)	756
MspR9I	CCNGG	2 cut(s)	456, 756
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	3 cut(s)	87, 288, 386
NciI	CCSGG	1 cut(s)	756
NdeI	CATATG	1 cut(s)	10
NlaIII	CATG	4 cut(s)	19, 90, 162, 370
NlaIV	GGNNCC	1 cut(s)	191
NmuCI	GTSAC	2 cut(s)	505, 537
NspI	RCATGY	1 cut(s)	90
PaeI	GCATGC	1 cut(s)	90
PagI	TCATGA	1 cut(s)	366
PfeI	GAWTC	3 cut(s)	300, 480, 721
PkrI	GCNGC	3 cut(s)	105, 382, 442
PleI	GAGTC	2 cut(s)	386, 622
PpsI	GAGTC	2 cut(s)	386, 622
PsiI	TTATAA	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	3 cut(s)	190, 571, 578
PvuII	CAGCTG	1 cut(s)	650
SaqAI	TTAA	2 cut(s)	92, 494
SatI	GCNGC	3 cut(s)	104, 381, 441
Sau96I	GGNCC	3 cut(s)	190, 571, 578
SchI	GAGTC	2 cut(s)	386, 622
ScrFI	CCNGG	2 cut(s)	456, 756
SduI	GDGCHC	1 cut(s)	756
SfaNI	GCATC	1 cut(s)	35
SinI	GGWCC	2 cut(s)	190, 571
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
SphI	GCATGC	1 cut(s)	90
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	2 cut(s)	193, 484
StyD4I	CCNGG	2 cut(s)	454, 754
StyI	CCWWGG	2 cut(s)	185, 384
TaaI	ACNGT	3 cut(s)	472, 505, 537
TaqI	TCGA	1 cut(s)	40
TasI	AATT	1 cut(s)	331
TfiI	GAWTC	3 cut(s)	300, 480, 721
Tru1I	TTAA	2 cut(s)	92, 494
Tru9I	TTAA	2 cut(s)	92, 494
TscAI	CASTG	4 cut(s)	202, 241, 409, 510
TseFI	GTSAC	2 cut(s)	505, 537
TseI	GCWGC	3 cut(s)	103, 380, 440
Tsp45I	GTSAC	2 cut(s)	505, 537
TspDTI	ATGAA	4 cut(s)	147, 324, 383, 676
TspGWI	ACGGA	3 cut(s)	365, 563, 681
TspRI	CASTG	4 cut(s)	202, 241, 409, 510
VpaK11BI	GGWCC	2 cut(s)	190, 571
XapI	RAATTY	1 cut(s)	331
XceI	RCATGY	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.