Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014345

Physical Location & Seq

Genomic Coordinates Reverse (-)

21595123 .. 21600262

Gene Structure 5140 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g27090.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCTTCAGATTTTGCATTCAAAGTTCCAGCTGAACTTGAAACGGCTTTGCGGTTAAATTCAGTTCATCACTATGTGACGAAGAGGCCGTGGCTTGATCTTTATGGAGTCAATGTGAGACCTGTTGCACCATTTGGAAGTATGAGTAGAAAACCGAATGTTGATCCATCATTGTTACACCGGTACTTGCCGGATGAGCTGCTGTTTGAGGTCTTTGTACGAATGACTCCATACGACATGGGAAGGGCATCATGTGTTTGTCGAAAATGGAGATACACTATCCGTAACCCTGTGTTTTGGCGCATTGCGTGCTTAAAAGCGTGGCAGCTTTCTGGAGTGGTTGAAAACTATAAGATTTTACAAGCAAAATATGAGAGTTCATGGAGGAAAATGTGGCTTCTAAGACCAAGGGTCCGCACTGATGGTCTGTATGTGAGTAGGAATACCTATATTCGCACTGGCGTTGCAGAATGGAAGGTCTCTAACCCAGTTCACTTGGTCTGCTACTATCGCTACATCAGATTCTATCCTTCTGGCAGATTTCTTTATAAGAATTCATCTCTAAAAGTAAAGGATGTGGCAAAAATTATGAACATCCGTGCAGCCAAGACAGACTCTGTTTTCAGTGGCCATTACACATTGTCAGATGATAAGGTTGAAGCTGCAGTTTTGTATCCAGGAAGGCGTCCGACAGTGTTGAGAATCCGCCTAAGGTTGAGAGGAACAGTAACAGGGGCAAACAATCGTATGGATTTACTGTCACTTGTTACAAGTGGTATTAACGATAATGAGATCCGTGGCCCTGATGAGGATATCCTCGGGATGGTTGAAGGATGGCAGGATGATGAGACTCACAACCCAGATGTGCCAGCTGTCTCACACAAGAGGGGTCTAACACCTTTTGTTTTCATTCCATTTGAAGAGGTGGATACATCATTTCTGAATCTACCTGTGGAGAAGATGGACTATTTTGTGCCCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006417 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

328

Amino Acids

37.88

Weight (kDa)

9.54

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	62 - 105	2.8e-11	F-box-like
F-box	PF00646	63 - 101	4.9e-11	F-box domain
FBO_C	PF19270	117 - 241	1.1e-60	F-box only protein C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21760 AT1G21760
fragaria_vesca	FvH4_2g27090 FvH4_2g27090 FvH4_2g27090 FvH4_2g27090
malus_domestica	MD15G1347000.v1.1
prunus_persica	Prupe.1G494700_v2.0.a1
pyrus_communis	pycom15g31130
rosa_chinensis	RchiOBHm_Chr6g0295971
rosa_laevigata	RLG00000011751
rosa_multiflora	Rmu_sc0016143.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172010
rosa_rugosa	Rorug06G0255500
rosa_samantha	Rh6AG369200 Rh6DG369700
rosa_wichuraiana	Rw6G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
AciI	CCGC	3 cut(s)	52, 415, 706
AclWI	GGATC	2 cut(s)	158, 787
AcoI	YGGCCR	1 cut(s)	628
AcsI	RAATTY	2 cut(s)	58, 553
AcyI	GRCGYC	1 cut(s)	685
AdeI	CACNNNGTG	1 cut(s)	76
AfaI	GTAC	2 cut(s)	185, 219
AfiI	CCNNNNNNNGG	2 cut(s)	808, 823
AgeI	ACCGGT	1 cut(s)	180
AgsI	TTSAA	6 cut(s)	22, 41, 344, 659, 830, 920
AhdI	GACNNNNNGTC	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	676
AluBI	AGCT	5 cut(s)	32, 199, 328, 662, 872
AluI	AGCT	5 cut(s)	32, 199, 328, 662, 872
Alw26I	GTCTC	4 cut(s)	112, 484, 842, 880
AlwI	GGATC	2 cut(s)	158, 787
AlwNI	CAGNNNCTG	1 cut(s)	617
Ama87I	CYCGRG	1 cut(s)	818
AoxI	GGCC	3 cut(s)	86, 628, 799
ApeKI	GCWGC	4 cut(s)	199, 325, 602, 662
ApoI	RAATTY	2 cut(s)	58, 553
AsiGI	ACCGGT	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	2 cut(s)	412, 800
AsuC2I	CCSGG	1 cut(s)	978
AvaI	CYCGRG	1 cut(s)	818
AvaII	GGWCC	1 cut(s)	412
AxyI	CCTNAGG	1 cut(s)	710
BaeGI	GKGCMC	1 cut(s)	978
BalI	TGGCCA	1 cut(s)	630
BbvI	GCAGC	4 cut(s)	186, 337, 614, 649
BccI	CCATC	5 cut(s)	175, 416, 817, 828, 955
BceAI	ACGGC	2 cut(s)	60, 73
BciT130I	CCWGG	1 cut(s)	678
BciVI	GTATCC	2 cut(s)	684, 922
BcnI	CCSGG	1 cut(s)	978
BcoDI	GTCTC	4 cut(s)	112, 484, 842, 880
BfmI	CTRYAG	1 cut(s)	663
BfuI	GTATCC	2 cut(s)	684, 922
BisI	GCNGC	4 cut(s)	200, 326, 603, 663
BlsI	GCNGC	4 cut(s)	201, 327, 604, 664
Bme1390I	CCNGG	2 cut(s)	678, 978
Bme18I	GGWCC	1 cut(s)	412
BmeRI	GACNNNNNGTC	1 cut(s)	410
BmeT110I	CYCGRG	1 cut(s)	818
BmgT120I	GGNCC	2 cut(s)	412, 800
BmiI	GGNNCC	1 cut(s)	413
BmrFI	CCNGG	2 cut(s)	678, 978
BmrI	ACTGGG	1 cut(s)	482
BmsI	GCATC	1 cut(s)	257
BmuI	ACTGGG	1 cut(s)	482
BpmI	CTGGAG	1 cut(s)	354
BpuMI	CCSGG	1 cut(s)	978
BsaHI	GRCGYC	1 cut(s)	685
BsaI	GGTCTC	2 cut(s)	112, 484
BsaJI	CCNNGG	4 cut(s)	89, 407, 796, 817
BsaWI	WCCGGW	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	2 cut(s)	808, 823
Bse118I	RCCGGY	1 cut(s)	180
Bse1I	ACTGG	2 cut(s)	463, 488
Bse21I	CCTNAGG	1 cut(s)	710
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	678
BseDI	CCNNGG	4 cut(s)	89, 407, 796, 817
BseGI	GGATG	6 cut(s)	199, 580, 594, 828, 839, 847
BseLI	CCNNNNNNNGG	2 cut(s)	808, 823
BseMI	GCAATG	1 cut(s)	303
BseNI	ACTGG	2 cut(s)	463, 488
BseSI	GKGCMC	1 cut(s)	978
BseXI	GCAGC	4 cut(s)	186, 337, 614, 649
BsgI	GTGCAG	1 cut(s)	621
BshFI	GGCC	3 cut(s)	88, 630, 801
BshTI	ACCGGT	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	818
BsiSI	CCGG	3 cut(s)	181, 191, 978
BslI	CCNNNNNNNGG	2 cut(s)	808, 823
BsmAI	GTCTC	4 cut(s)	112, 484, 842, 880
BsmI	GAATGC	1 cut(s)	17
BsnI	GGCC	3 cut(s)	88, 630, 801
Bso31I	GGTCTC	2 cut(s)	112, 484
BsoBI	CYCGRG	1 cut(s)	818
Bsp1286I	GDGCHC	1 cut(s)	978
Bsp143I	GATC	3 cut(s)	97, 163, 792
BspACI	CCGC	3 cut(s)	52, 415, 706
BspANI	GGCC	3 cut(s)	88, 630, 801
BspLI	GGNNCC	1 cut(s)	413
BspMAI	CTGCAG	1 cut(s)	667
BspPI	GGATC	2 cut(s)	158, 787
BspTNI	GGTCTC	2 cut(s)	112, 484
BsrDI	GCAATG	1 cut(s)	303
BsrFI	RCCGGY	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	463, 488
BssAI	RCCGGY	1 cut(s)	180
BssECI	CCNNGG	4 cut(s)	89, 407, 796, 817
BssMI	GATC	3 cut(s)	97, 163, 792
BssNI	GRCGYC	1 cut(s)	685
BssT1I	CCWWGG	1 cut(s)	407
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	3 cut(s)	694, 727, 759
Bst6I	CTCTTC	2 cut(s)	77, 915
BstACI	GRCGYC	1 cut(s)	685
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstC8I	GCNNGC	2 cut(s)	310, 870
BstDEI	CTNAG	2 cut(s)	401, 710
BstDSI	CCRYGG	2 cut(s)	89, 796
BstF5I	GGATG	6 cut(s)	199, 580, 594, 828, 839, 847
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	3 cut(s)	100, 166, 795
BstMAI	GTCTC	4 cut(s)	112, 484, 842, 880
BstMBI	GATC	3 cut(s)	97, 163, 792
BstMWI	GCNNNNNNNGC	3 cut(s)	196, 309, 510
BstNI	CCWGG	1 cut(s)	678
BstSCI	CCNGG	2 cut(s)	676, 976
BstSFI	CTRYAG	1 cut(s)	663
BstSLI	GKGCMC	1 cut(s)	978
BstV1I	GCAGC	4 cut(s)	186, 337, 614, 649
BstX2I	RGATCY	1 cut(s)	792
BstYI	RGATCY	1 cut(s)	792
Bsu36I	CCTNAGG	1 cut(s)	710
BsuI	GTATCC	2 cut(s)	684, 922
BsuRI	GGCC	3 cut(s)	88, 630, 801
BtgI	CCRYGG	2 cut(s)	89, 796
BtsCI	GGATG	6 cut(s)	199, 580, 594, 828, 839, 847
BtsIMutI	CAGTG	4 cut(s)	417, 456, 631, 699
Cac8I	GCNNGC	2 cut(s)	310, 870
CaiI	CAGNNNCTG	1 cut(s)	617
CfoI	GCGC	1 cut(s)	303
Cfr10I	RCCGGY	1 cut(s)	180
Cfr13I	GGNCC	2 cut(s)	412, 800
CseI	GACGC	1 cut(s)	674
Csp6I	GTAC	2 cut(s)	184, 218
CspAI	ACCGGT	1 cut(s)	180
CviAII	CATG	3 cut(s)	238, 252, 381
CviQI	GTAC	2 cut(s)	184, 218
DdeI	CTNAG	2 cut(s)	401, 710
DpnI	GATC	3 cut(s)	99, 165, 794
DpnII	GATC	3 cut(s)	97, 163, 792
DraIII	CACNNNGTG	1 cut(s)	76
DriI	GACNNNNNGTC	1 cut(s)	410
EaeI	YGGCCR	1 cut(s)	628
Eam1104I	CTCTTC	2 cut(s)	77, 915
Eam1105I	GACNNNNNGTC	1 cut(s)	410
EarI	CTCTTC	2 cut(s)	77, 915
EciI	GGCGGA	1 cut(s)	695
Eco130I	CCWWGG	1 cut(s)	407
Eco31I	GGTCTC	2 cut(s)	112, 484
Eco32I	GATATC	1 cut(s)	814
Eco47I	GGWCC	1 cut(s)	412
Eco81I	CCTNAGG	1 cut(s)	710
Eco88I	CYCGRG	1 cut(s)	818
EcoRI	GAATTC	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	676
EcoRV	GATATC	1 cut(s)	814
EcoT14I	CCWWGG	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	407
FaeI	CATG	3 cut(s)	241, 255, 384
FatI	CATG	3 cut(s)	237, 251, 380
Fnu4HI	GCNGC	4 cut(s)	200, 326, 603, 663
FokI	GGATG	6 cut(s)	206, 581, 587, 835, 846, 854
Fsp4HI	GCNGC	4 cut(s)	200, 326, 603, 663
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	4 cut(s)	200, 326, 603, 663
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	3 cut(s)	88, 630, 801
HapII	CCGG	3 cut(s)	181, 191, 978
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	1 cut(s)	303
Hin1I	GRCGYC	1 cut(s)	685
Hin1II	CATG	3 cut(s)	241, 255, 384
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HinfI	GANTC	7 cut(s)	108, 226, 522, 614, 702, 850, 943
HpaII	CCGG	3 cut(s)	181, 191, 978
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	5 cut(s)	10, 521, 646, 690, 942
Hpy188III	TCNNGA	2 cut(s)	333, 820
Hpy8I	GTNNAC	1 cut(s)	493
HpyAV	CCTTC	5 cut(s)	237, 469, 540, 675, 824
HpyCH4III	ACNGT	3 cut(s)	694, 727, 759
HpyCH4V	TGCA	5 cut(s)	17, 128, 467, 602, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	196, 309, 510
HpyF3I	CTNAG	2 cut(s)	401, 710
Hsp92I	GRCGYC	1 cut(s)	685
Hsp92II	CATG	3 cut(s)	241, 255, 384
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	97, 163, 792
Lsp1109I	GCAGC	4 cut(s)	186, 337, 614, 649
LweI	GCATC	1 cut(s)	257
MaeIII	GTNAC	6 cut(s)	76, 174, 284, 727, 759, 766
MalI	GATC	3 cut(s)	99, 165, 794
MboI	GATC	3 cut(s)	97, 163, 792
MboII	GAAGA	3 cut(s)	94, 932, 970
MflI	RGATCY	1 cut(s)	792
MhlI	GDGCHC	1 cut(s)	978
MlsI	TGGCCA	1 cut(s)	630
MluCI	AATT	3 cut(s)	58, 553, 585
MluNI	TGGCCA	1 cut(s)	630
MlyI	GAGTC	4 cut(s)	117, 220, 608, 844
MmeI	TCCRAC	1 cut(s)	713
MnlI	CCTC	8 cut(s)	78, 202, 378, 713, 802, 827, 879, 916
Mox20I	TGGCCA	1 cut(s)	630
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	3 cut(s)	56, 314, 780
MslI	CAYNNNNRTG	1 cut(s)	72
Msp20I	TGGCCA	1 cut(s)	630
MspA1I	CMGCKG	2 cut(s)	32, 872
MspI	CCGG	3 cut(s)	181, 191, 978
MspR9I	CCNGG	2 cut(s)	678, 978
Mva1269I	GAATGC	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	678
MwoI	GCNNNNNNNGC	3 cut(s)	196, 309, 510
NciI	CCSGG	1 cut(s)	978
NdeII	GATC	3 cut(s)	97, 163, 792
NlaIII	CATG	3 cut(s)	241, 255, 384
NlaIV	GGNNCC	1 cut(s)	413
NmuCI	GTSAC	2 cut(s)	76, 759
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PctI	GAATGC	1 cut(s)	17
PfeI	GAWTC	3 cut(s)	522, 702, 943
PfoI	TCCNGGA	1 cut(s)	676
PinAI	ACCGGT	1 cut(s)	180
PkrI	GCNGC	4 cut(s)	201, 327, 604, 664
PleI	GAGTC	4 cut(s)	116, 220, 608, 844
PpsI	GAGTC	4 cut(s)	116, 220, 608, 844
PsiI	TTATAA	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	676
PspGI	CCWGG	1 cut(s)	676
PspN4I	GGNNCC	1 cut(s)	413
PspPI	GGNCC	2 cut(s)	412, 800
PstI	CTGCAG	1 cut(s)	667
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	792
PvuII	CAGCTG	2 cut(s)	32, 872
RsaI	GTAC	2 cut(s)	185, 219
RsaNI	GTAC	2 cut(s)	184, 218
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	3 cut(s)	56, 314, 780
SatI	GCNGC	4 cut(s)	200, 326, 603, 663
Sau3AI	GATC	3 cut(s)	97, 163, 792
Sau96I	GGNCC	2 cut(s)	412, 800
SchI	GAGTC	4 cut(s)	117, 220, 608, 844
ScrFI	CCNGG	2 cut(s)	678, 978
SduI	GDGCHC	1 cut(s)	978
SfaNI	GCATC	1 cut(s)	257
SfcI	CTRYAG	1 cut(s)	663
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	72
Sse9I	AATT	3 cut(s)	58, 553, 585
SsiI	CCGC	3 cut(s)	52, 415, 706
StyD4I	CCNGG	2 cut(s)	676, 976
StyI	CCWWGG	1 cut(s)	407
TaaI	ACNGT	3 cut(s)	694, 727, 759
TaqI	TCGA	1 cut(s)	262
TasI	AATT	3 cut(s)	58, 553, 585
TfiI	GAWTC	3 cut(s)	522, 702, 943
Tru1I	TTAA	3 cut(s)	56, 314, 780
Tru9I	TTAA	3 cut(s)	56, 314, 780
TscAI	CASTG	4 cut(s)	424, 463, 631, 699
TseFI	GTSAC	2 cut(s)	76, 759
TseI	GCWGC	4 cut(s)	199, 325, 602, 662
Tsp45I	GTSAC	2 cut(s)	76, 759
TspDTI	ATGAA	5 cut(s)	56, 369, 546, 605, 898
TspGWI	ACGGA	3 cut(s)	272, 587, 785
TspRI	CASTG	4 cut(s)	424, 463, 631, 699
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	2 cut(s)	58, 553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.