Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0014345

Physical Location & Seq

Genomic Coordinates Reverse (-)

56275538 .. 56279364

Gene Structure 3827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G032200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCTTCAGATTTTGCTTTCAAAGTTCCAGCTGAACTTGAAGCGGCTTTGCGGTTGAACTCAGTTCATCACTATGTGACAAAAAGGCCGTGGCTTGACCTTTATGGAGTCAATGTTAGACCTGTTGCACCATTTGGAAGTATGAGTAGAAAAGCAAATGTTGATCCAGCACTGTTACACCAGTACCTGCCTGATGAGTTGCTCTTTGAGGTGTTTGCACGAATGACTCCATATGACATGGGAAGGGCATCTTGTGTTTGTCGAAAATGGAGATACACTATCCGTAATCCTGTGTTTTGGCGCATTGCATGCTTAAAAGCTTGGCAGCTTTCTGGAGTTGTTGAAAACTATAAGATTTTACAAGCAAAATATGAGAGTTCATGGAGAAAAATGTGGCTTCTAAGACCAAGGGTCCGCACTGATGGTCTGTATGTGAGTAGGAATACTTATATTCGCACTGGAGTTGCAGAATGGAAGGTCTCTAACCCAGTTCACTTGGTCTGCTACTATCGCTACATCAGATTCTATCCTTCTGTCAAGGATGTGGCAAAAATCATGAATATCCGTGCAGCCAAGGCAGACTCGGTTTTCAGTGGCCATTACTCATTATCAGATGATAAGGTTGAAGCAGCAGTTTTGTATCCAGGCAGGCGTCCAACTGTGTTGAGAATCCGCCTAAGGTTAAGAGGAACAGTAACAGGGGCAAACAATCGTATGGATTTACTGTCACTTGTTACAAGTGGTGTGAACGATGATGAGGTCCGTGGCCCTGATGAGGATATCCTTGAGGTGGTTGAAGGATGGCAGGATGATGAGACTCACAACCCAGATGTGCCAGCTGTCTCACACACGAGGGGTCTAACACCTTTTGTCTTCATTCCGTTTGAAGAGGTGGATACATCATTTCTGAATCTACCTGTGGAAAAGATGGATTATTTTGTGCCCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006417 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

316

Amino Acids

36.4

Weight (kDa)

9.03

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	62 - 105	1.7e-11	F-box-like
F-box	PF00646	63 - 101	6.9e-12	F-box domain
FBO_C	PF19270	117 - 316	2.2e-92	F-box only protein C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21760 AT1G21760
fragaria_vesca	FvH4_2g27090 FvH4_2g27090 FvH4_2g27090 FvH4_2g27090
malus_domestica	MD15G1347000.v1.1
prunus_persica	Prupe.1G494700_v2.0.a1
pyrus_communis	pycom15g31130
rosa_chinensis	RchiOBHm_Chr6g0295971
rosa_laevigata	RLG00000011751
rosa_multiflora	Rmu_sc0016143.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172010
rosa_rugosa	Rorug06G0255500
rosa_samantha	Rh6AG369200 Rh6DG369700
rosa_wichuraiana	Rw6G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	195
AciI	CCGC	4 cut(s)	44, 52, 415, 673
AclWI	GGATC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	595
AcyI	GRCGYC	1 cut(s)	652
AdeI	CACNNNGTG	1 cut(s)	76
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	2 cut(s)	775, 790
AgsI	TTSAA	7 cut(s)	22, 41, 58, 344, 626, 797, 887
AhdI	GACNNNNNGTC	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	643
AluBI	AGCT	4 cut(s)	32, 320, 328, 839
AluI	AGCT	4 cut(s)	32, 320, 328, 839
Alw26I	GTCTC	3 cut(s)	484, 809, 847
AlwI	GGATC	1 cut(s)	158
AlwNI	CAGNNNCTG	1 cut(s)	187
AoxI	GGCC	3 cut(s)	86, 595, 766
ApeKI	GCWGC	3 cut(s)	325, 569, 629
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	3 cut(s)	412, 760, 767
AsuC2I	CCSGG	1 cut(s)	945
AvaII	GGWCC	2 cut(s)	412, 760
AxyI	CCTNAGG	1 cut(s)	677
BaeGI	GKGCMC	1 cut(s)	945
BaeI	ACNNNNGTAYC	2 cut(s)	167, 200
BalI	TGGCCA	1 cut(s)	597
BauI	CACGAG	1 cut(s)	850
BbsI	GAAGAC	1 cut(s)	865
BbvI	GCAGC	3 cut(s)	337, 581, 641
BccI	CCATC	3 cut(s)	416, 795, 922
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	645
BciVI	GTATCC	2 cut(s)	651, 889
BcnI	CCSGG	1 cut(s)	945
BcoDI	GTCTC	3 cut(s)	484, 809, 847
BfuAI	ACCTGC	1 cut(s)	195
BfuI	GTATCC	2 cut(s)	651, 889
BisI	GCNGC	4 cut(s)	45, 326, 570, 630
BlsI	GCNGC	4 cut(s)	46, 327, 571, 631
Bme1390I	CCNGG	2 cut(s)	645, 945
Bme18I	GGWCC	2 cut(s)	412, 760
BmeRI	GACNNNNNGTC	1 cut(s)	410
BmgT120I	GGNCC	3 cut(s)	412, 760, 767
BmiI	GGNNCC	1 cut(s)	413
BmrFI	CCNGG	2 cut(s)	645, 945
BmrI	ACTGGG	1 cut(s)	482
BmsI	GCATC	1 cut(s)	257
BmuI	ACTGGG	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	865
BpmI	CTGGAG	2 cut(s)	354, 480
BpuEI	CTTGAG	1 cut(s)	806
BpuMI	CCSGG	1 cut(s)	945
BsaHI	GRCGYC	1 cut(s)	652
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	4 cut(s)	89, 407, 573, 763
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	2 cut(s)	775, 790
Bse1I	ACTGG	3 cut(s)	181, 463, 488
Bse21I	CCTNAGG	1 cut(s)	677
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	645
BseDI	CCNNGG	4 cut(s)	89, 407, 573, 763
BseGI	GGATG	3 cut(s)	547, 806, 814
BseLI	CCNNNNNNNGG	2 cut(s)	775, 790
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	3 cut(s)	181, 463, 488
BseSI	GKGCMC	1 cut(s)	945
BseXI	GCAGC	3 cut(s)	337, 581, 641
BsgI	GTGCAG	1 cut(s)	588
BshFI	GGCC	3 cut(s)	88, 597, 768
BsiSI	CCGG	1 cut(s)	945
BslI	CCNNNNNNNGG	2 cut(s)	775, 790
BsmAI	GTCTC	3 cut(s)	484, 809, 847
BsnI	GGCC	3 cut(s)	88, 597, 768
Bso31I	GGTCTC	1 cut(s)	484
Bsp1286I	GDGCHC	1 cut(s)	945
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	4 cut(s)	44, 52, 415, 673
BspANI	GGCC	3 cut(s)	88, 597, 768
BspCNI	CTCAG	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	555
BspLI	GGNNCC	1 cut(s)	413
BspMI	ACCTGC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	484
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	3 cut(s)	181, 463, 488
BssECI	CCNNGG	4 cut(s)	89, 407, 573, 763
BssMI	GATC	1 cut(s)	163
BssNI	GRCGYC	1 cut(s)	652
BssSI	CACGAG	1 cut(s)	850
BssT1I	CCWWGG	2 cut(s)	407, 573
Bst2BI	CACGAG	1 cut(s)	850
Bst2UI	CCWGG	1 cut(s)	645
Bst4CI	ACNGT	4 cut(s)	174, 661, 694, 726
Bst6I	CTCTTC	1 cut(s)	882
BstACI	GRCGYC	1 cut(s)	652
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstC8I	GCNNGC	3 cut(s)	310, 650, 837
BstDEI	CTNAG	3 cut(s)	61, 401, 677
BstDSI	CCRYGG	2 cut(s)	89, 763
BstF5I	GGATG	3 cut(s)	547, 806, 814
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	3 cut(s)	484, 809, 847
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	3 cut(s)	309, 510, 575
BstNI	CCWGG	1 cut(s)	645
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	2 cut(s)	643, 943
BstSLI	GKGCMC	1 cut(s)	945
BstV1I	GCAGC	3 cut(s)	337, 581, 641
BstV2I	GAAGAC	1 cut(s)	865
Bsu36I	CCTNAGG	1 cut(s)	677
BsuI	GTATCC	2 cut(s)	651, 889
BsuRI	GGCC	3 cut(s)	88, 597, 768
BtgI	CCRYGG	2 cut(s)	89, 763
BtsCI	GGATG	3 cut(s)	547, 806, 814
BtsIMutI	CAGTG	4 cut(s)	170, 417, 456, 598
BveI	ACCTGC	1 cut(s)	195
Cac8I	GCNNGC	3 cut(s)	310, 650, 837
CaiI	CAGNNNCTG	1 cut(s)	187
CciI	TCATGA	1 cut(s)	555
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	3 cut(s)	412, 760, 767
CseI	GACGC	1 cut(s)	641
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	4 cut(s)	238, 309, 381, 556
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	3 cut(s)	61, 401, 677
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
DraIII	CACNNNGTG	1 cut(s)	76
DriI	GACNNNNNGTC	1 cut(s)	410
EaeI	YGGCCR	1 cut(s)	595
Eam1104I	CTCTTC	1 cut(s)	882
Eam1105I	GACNNNNNGTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	882
EciI	GGCGGA	1 cut(s)	662
Eco130I	CCWWGG	2 cut(s)	407, 573
Eco31I	GGTCTC	1 cut(s)	484
Eco32I	GATATC	1 cut(s)	781
Eco47I	GGWCC	2 cut(s)	412, 760
Eco81I	CCTNAGG	1 cut(s)	677
EcoRII	CCWGG	1 cut(s)	643
EcoRV	GATATC	1 cut(s)	781
EcoT14I	CCWWGG	2 cut(s)	407, 573
ErhI	CCWWGG	2 cut(s)	407, 573
FaeI	CATG	4 cut(s)	241, 312, 384, 559
FalI	AAGNNNNNCTT	2 cut(s)	235, 267
FatI	CATG	4 cut(s)	237, 308, 380, 555
FauNDI	CATATG	1 cut(s)	232
Fnu4HI	GCNGC	4 cut(s)	45, 326, 570, 630
FokI	GGATG	3 cut(s)	554, 813, 821
Fsp4HI	GCNGC	4 cut(s)	45, 326, 570, 630
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	4 cut(s)	45, 326, 570, 630
GsuI	CTGGAG	2 cut(s)	354, 480
HaeIII	GGCC	3 cut(s)	88, 597, 768
HapII	CCGG	1 cut(s)	945
HgaI	GACGC	1 cut(s)	641
HhaI	GCGC	1 cut(s)	303
Hin1I	GRCGYC	1 cut(s)	652
Hin1II	CATG	4 cut(s)	241, 312, 384, 559
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	7 cut(s)	108, 226, 522, 581, 669, 817, 910
HpaII	CCGG	1 cut(s)	945
Hpy166II	GTNNAC	2 cut(s)	493, 748
Hpy188I	TCNGA	4 cut(s)	10, 521, 613, 909
Hpy188III	TCNNGA	2 cut(s)	333, 556
Hpy8I	GTNNAC	2 cut(s)	493, 748
HpyAV	CCTTC	4 cut(s)	237, 469, 540, 791
HpyCH4III	ACNGT	4 cut(s)	174, 661, 694, 726
HpyCH4V	TGCA	5 cut(s)	128, 218, 308, 467, 569
HpyF10VI	GCNNNNNNNGC	3 cut(s)	309, 510, 575
HpyF3I	CTNAG	3 cut(s)	61, 401, 677
Hsp92I	GRCGYC	1 cut(s)	652
Hsp92II	CATG	4 cut(s)	241, 312, 384, 559
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	163
Lsp1109I	GCAGC	3 cut(s)	337, 581, 641
LweI	GCATC	1 cut(s)	257
MaeIII	GTNAC	5 cut(s)	76, 174, 694, 726, 733
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	2 cut(s)	865, 899
MhlI	GDGCHC	1 cut(s)	945
MlsI	TGGCCA	1 cut(s)	597
MluNI	TGGCCA	1 cut(s)	597
MlyI	GAGTC	4 cut(s)	117, 220, 575, 811
MmeI	TCCRAC	1 cut(s)	680
MnlI	CCTC	7 cut(s)	202, 680, 751, 769, 781, 846, 883
Mox20I	TGGCCA	1 cut(s)	597
MscI	TGGCCA	1 cut(s)	597
MseI	TTAA	2 cut(s)	314, 683
MslI	CAYNNNNRTG	1 cut(s)	72
Msp20I	TGGCCA	1 cut(s)	597
MspA1I	CMGCKG	2 cut(s)	32, 839
MspI	CCGG	1 cut(s)	945
MspR9I	CCNGG	2 cut(s)	645, 945
MvaI	CCWGG	1 cut(s)	645
MwoI	GCNNNNNNNGC	3 cut(s)	309, 510, 575
NciI	CCSGG	1 cut(s)	945
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	4 cut(s)	241, 312, 384, 559
NlaIV	GGNNCC	1 cut(s)	413
NmuCI	GTSAC	2 cut(s)	76, 726
NspI	RCATGY	1 cut(s)	312
PaeI	GCATGC	1 cut(s)	312
PagI	TCATGA	1 cut(s)	555
PfeI	GAWTC	3 cut(s)	522, 669, 910
PkrI	GCNGC	4 cut(s)	46, 327, 571, 631
PleI	GAGTC	4 cut(s)	116, 220, 575, 811
PpsI	GAGTC	4 cut(s)	116, 220, 575, 811
Psp6I	CCWGG	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	643
PspN4I	GGNNCC	1 cut(s)	413
PspPI	GGNCC	3 cut(s)	412, 760, 767
PstNI	CAGNNNCTG	1 cut(s)	187
PvuII	CAGCTG	2 cut(s)	32, 839
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	314, 683
SatI	GCNGC	4 cut(s)	45, 326, 570, 630
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	3 cut(s)	412, 760, 767
SchI	GAGTC	4 cut(s)	117, 220, 575, 811
ScrFI	CCNGG	2 cut(s)	645, 945
SduI	GDGCHC	1 cut(s)	945
SfaNI	GCATC	1 cut(s)	257
SinI	GGWCC	2 cut(s)	412, 760
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	785
SmoI	CTYRAG	1 cut(s)	785
SphI	GCATGC	1 cut(s)	312
SsiI	CCGC	4 cut(s)	44, 52, 415, 673
StyD4I	CCNGG	2 cut(s)	643, 943
StyI	CCWWGG	2 cut(s)	407, 573
TaaI	ACNGT	4 cut(s)	174, 661, 694, 726
TaqI	TCGA	1 cut(s)	262
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	3 cut(s)	522, 669, 910
Tru1I	TTAA	2 cut(s)	314, 683
Tru9I	TTAA	2 cut(s)	314, 683
TscAI	CASTG	4 cut(s)	177, 424, 463, 598
TseFI	GTSAC	2 cut(s)	76, 726
TseI	GCWGC	3 cut(s)	325, 569, 629
Tsp45I	GTSAC	2 cut(s)	76, 726
TspDTI	ATGAA	4 cut(s)	56, 369, 572, 865
TspGWI	ACGGA	4 cut(s)	272, 554, 752, 870
TspRI	CASTG	4 cut(s)	177, 424, 463, 598
VpaK11BI	GGWCC	2 cut(s)	412, 760
XceI	RCATGY	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.