Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0014345

Physical Location & Seq

Genomic Coordinates Forward (+)

41055693 .. 41059879

Gene Structure 4187 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1347000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCTTCAGATTTTGCCCTGAAGGTTCCTGCTGAACTCGAATCGGCTTTGCGGTTGAACGCGGTTCAGTACTATATAACCAAGAGGCCGTGGCTTGATCTTTATGGAATCAATGTGAGACCTGTTGCACCGATTGGAAGTACGAGTAGAAAAGTACAAGTCGATTCATCGCTTTTACACCGTTGCTTGCCGGATGAGCTGCTGCTTGAGGTTTTTGCACGAATGACCCCATATGACTTGGGAAGGGCAGCTTGTGTTTGTCGAAAATGGAGATACACTATCCGTAACCCTGTGTTTTGGCGCAGTGCCTGCTTAAAGGCTTGGCAGCTCTCTGGGGTGGTTGAAAACTTTAAGATTTTACAAGCAAACTACGACACTTCATGGAGAAAAATGTGGCTTCTAAGACCAAGGGTTCGCACTGATGGTCTGTATGTGAGCAGGAATACCTATATCCGTGCCGGAATTGCAGAATGGAAGATCAATAACCCAGTTCACTTGGTGTGCTATTACCGTTACATGCGATTGTTTCCTTCTGGCCGATTTCTCTACAAGAATTCATCTCAAAAACTCAAGGATGTAGCGAAGTTCATGAACTTCCGTGGAGCCAGGGCAGACTCTGTTTTCAGTGGCCATTACACTTTGTCAGATGATAAGGTTGAAGCTGCTGTTCTGTATCCAGGAATGCGTCCTACTGTGTTGAGAATCCGACTAAGGTTAAGAGGAACAACAACAGGAGCAAACAATAGGATGGATTTACTGTCACTTGTTACAAGTGGTGTAAACAATAACGAGGTTGGCGGCCCTGATGAGGATATCCTCGGGGTGGTTGAAGGTTGGCAGGACGATGAGACTCACAACCCAGATGTGCCGGCTGTCTCGCACAAGAGGGGTCTAACACCTTTTGTCTTTGTTCCTTTTGAGGAGGTAGAGACATCGTTTCTGAATCTGCCGGTGGAGAAGATGGATTATTTTGTACCAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006417 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

328

Amino Acids

37.48

Weight (kDa)

9.42

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	62 - 105	2.1e-13	F-box-like
F-box	PF00646	62 - 101	7.2e-13	F-box domain
FBO_C	PF19270	118 - 327	4.7e-104	F-box only protein C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21760 AT1G21760
fragaria_vesca	FvH4_2g27090 FvH4_2g27090 FvH4_2g27090 FvH4_2g27090
malus_domestica	MD15G1347000.v1.1
prunus_persica	Prupe.1G494700_v2.0.a1
pyrus_communis	pycom15g31130
rosa_chinensis	RchiOBHm_Chr6g0295971
rosa_laevigata	RLG00000011751
rosa_multiflora	Rmu_sc0016143.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172010
rosa_rugosa	Rorug06G0255500
rosa_samantha	Rh6AG369200 Rh6DG369700
rosa_wichuraiana	Rw6G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	62
AciI	CCGC	3 cut(s)	52, 62, 798
AcoI	YGGCCR	2 cut(s)	535, 628
AcsI	RAATTY	1 cut(s)	553
AcuI	CTGAAG	1 cut(s)	41
AdeI	CACNNNGTG	1 cut(s)	499
AfaI	GTAC	4 cut(s)	71, 142, 156, 975
AfiI	CCNNNNNNNGG	2 cut(s)	808, 823
AgsI	TTSAA	4 cut(s)	58, 344, 659, 830
AjnI	CCWGG	3 cut(s)	605, 676, 976
AluBI	AGCT	4 cut(s)	199, 251, 328, 662
AluI	AGCT	4 cut(s)	199, 251, 328, 662
Alw26I	GTCTC	4 cut(s)	112, 842, 880, 923
AlwNI	CAGNNNCTG	2 cut(s)	309, 617
Ama87I	CYCGRG	1 cut(s)	818
AoxI	GGCC	4 cut(s)	86, 535, 628, 799
ApeKI	GCWGC	5 cut(s)	199, 202, 248, 325, 662
ApoI	RAATTY	1 cut(s)	553
ArsI	GACNNNNNNTTYG	2 cut(s)	396, 428
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	800
AvaI	CYCGRG	1 cut(s)	818
BalI	TGGCCA	1 cut(s)	630
BbvI	GCAGC	5 cut(s)	186, 189, 260, 337, 649
BccI	CCATC	3 cut(s)	416, 742, 955
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	3 cut(s)	607, 678, 978
BciVI	GTATCC	1 cut(s)	684
BcoDI	GTCTC	4 cut(s)	112, 842, 880, 923
BfuI	GTATCC	1 cut(s)	684
BisI	GCNGC	6 cut(s)	200, 203, 249, 326, 663, 799
BlsI	GCNGC	6 cut(s)	201, 204, 250, 327, 664, 800
BmcAI	AGTACT	1 cut(s)	71
Bme1390I	CCNGG	3 cut(s)	607, 678, 978
BmeT110I	CYCGRG	1 cut(s)	818
BmgT120I	GGNCC	1 cut(s)	800
BmiI	GGNNCC	2 cut(s)	27, 604
BmrFI	CCNGG	3 cut(s)	607, 678, 978
BmrI	ACTGGG	1 cut(s)	482
BmuI	ACTGGG	1 cut(s)	482
BpuEI	CTTGAG	2 cut(s)	227, 554
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	5 cut(s)	89, 407, 598, 606, 817
Bsc4I	CCNNNNNNNGG	2 cut(s)	808, 823
Bse118I	RCCGGY	2 cut(s)	868, 949
Bse1I	ACTGG	1 cut(s)	488
BseBI	CCWGG	3 cut(s)	607, 678, 978
BseDI	CCNNGG	5 cut(s)	89, 407, 598, 606, 817
BseGI	GGATG	3 cut(s)	199, 580, 753
BseLI	CCNNNNNNNGG	2 cut(s)	808, 823
BseNI	ACTGG	1 cut(s)	488
BseRI	GAGGAG	1 cut(s)	935
BseXI	GCAGC	5 cut(s)	186, 189, 260, 337, 649
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	4 cut(s)	88, 537, 630, 801
BsiHKCI	CYCGRG	1 cut(s)	818
BsiSI	CCGG	4 cut(s)	191, 459, 869, 950
BslI	CCNNNNNNNGG	2 cut(s)	808, 823
BsmAI	GTCTC	4 cut(s)	112, 842, 880, 923
BsmI	GAATGC	1 cut(s)	687
BsnI	GGCC	4 cut(s)	88, 537, 630, 801
Bso31I	GGTCTC	1 cut(s)	112
BsoBI	CYCGRG	1 cut(s)	818
Bsp143I	GATC	2 cut(s)	97, 477
BspACI	CCGC	3 cut(s)	52, 62, 798
BspANI	GGCC	4 cut(s)	88, 537, 630, 801
BspFNI	CGCG	1 cut(s)	62
BspHI	TCATGA	1 cut(s)	588
BspLI	GGNNCC	2 cut(s)	27, 604
BspTNI	GGTCTC	1 cut(s)	112
BsrFI	RCCGGY	2 cut(s)	868, 949
BsrI	ACTGG	1 cut(s)	488
BssAI	RCCGGY	2 cut(s)	868, 949
BssECI	CCNNGG	5 cut(s)	89, 407, 598, 606, 817
BssMI	GATC	2 cut(s)	97, 477
BssT1I	CCWWGG	1 cut(s)	407
Bst2UI	CCWGG	3 cut(s)	607, 678, 978
Bst4CI	ACNGT	4 cut(s)	182, 512, 694, 759
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstC8I	GCNNGC	3 cut(s)	188, 310, 870
BstDEI	CTNAG	2 cut(s)	401, 710
BstDSI	CCRYGG	2 cut(s)	89, 598
BstF5I	GGATG	3 cut(s)	199, 580, 753
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	2 cut(s)	100, 480
BstMAI	GTCTC	4 cut(s)	112, 842, 880, 923
BstMBI	GATC	2 cut(s)	97, 477
BstMWI	GCNNNNNNNGC	3 cut(s)	196, 309, 464
BstNI	CCWGG	3 cut(s)	607, 678, 978
BstNSI	RCATGY	1 cut(s)	520
BstSCI	CCNGG	3 cut(s)	605, 676, 976
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	5 cut(s)	186, 189, 260, 337, 649
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	4 cut(s)	88, 537, 630, 801
BtgI	CCRYGG	2 cut(s)	89, 598
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	3 cut(s)	199, 580, 753
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	3 cut(s)	310, 417, 631
Cac8I	GCNNGC	3 cut(s)	188, 310, 870
CaiI	CAGNNNCTG	2 cut(s)	309, 617
CciI	TCATGA	1 cut(s)	588
CfoI	GCGC	1 cut(s)	303
Cfr10I	RCCGGY	2 cut(s)	868, 949
Cfr13I	GGNCC	1 cut(s)	800
CseI	GACGC	1 cut(s)	674
Csp6I	GTAC	4 cut(s)	70, 141, 155, 974
CviAII	CATG	3 cut(s)	381, 517, 589
CviQI	GTAC	4 cut(s)	70, 141, 155, 974
DdeI	CTNAG	2 cut(s)	401, 710
DpnI	GATC	2 cut(s)	99, 479
DpnII	GATC	2 cut(s)	97, 477
DraIII	CACNNNGTG	1 cut(s)	499
EaeI	YGGCCR	2 cut(s)	535, 628
Eco130I	CCWWGG	1 cut(s)	407
Eco31I	GGTCTC	1 cut(s)	112
Eco32I	GATATC	1 cut(s)	814
Eco57I	CTGAAG	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	818
EcoRI	GAATTC	1 cut(s)	553
EcoRII	CCWGG	3 cut(s)	605, 676, 976
EcoRV	GATATC	1 cut(s)	814
EcoT14I	CCWWGG	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	407
FaeI	CATG	3 cut(s)	384, 520, 592
FalI	AAGNNNNNCTT	2 cut(s)	235, 267
FatI	CATG	3 cut(s)	380, 516, 588
FauNDI	CATATG	1 cut(s)	232
Fnu4HI	GCNGC	6 cut(s)	200, 203, 249, 326, 663, 799
FokI	GGATG	3 cut(s)	206, 587, 760
Fsp4HI	GCNGC	6 cut(s)	200, 203, 249, 326, 663, 799
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	6 cut(s)	200, 203, 249, 326, 663, 799
HaeIII	GGCC	4 cut(s)	88, 537, 630, 801
HapII	CCGG	4 cut(s)	191, 459, 869, 950
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	3 cut(s)	384, 520, 592
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HinfI	GANTC	7 cut(s)	41, 108, 164, 614, 702, 850, 943
HpaII	CCGG	4 cut(s)	191, 459, 869, 950
Hpy166II	GTNNAC	2 cut(s)	493, 781
Hpy188I	TCNGA	4 cut(s)	10, 646, 707, 942
Hpy188III	TCNNGA	1 cut(s)	589
Hpy8I	GTNNAC	2 cut(s)	493, 781
HpyAV	CCTTC	4 cut(s)	16, 237, 540, 824
HpyCH4III	ACNGT	4 cut(s)	182, 512, 694, 759
HpyCH4V	TGCA	3 cut(s)	128, 218, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	196, 309, 464
HpyF3I	CTNAG	2 cut(s)	401, 710
Hsp92II	CATG	3 cut(s)	384, 520, 592
HspAI	GCGC	1 cut(s)	301
KroI	GCCGGC	1 cut(s)	868
KroNI	GCCGGC	1 cut(s)	870
Kzo9I	GATC	2 cut(s)	97, 477
LmnI	GCTCC	2 cut(s)	602, 734
Lsp1109I	GCAGC	5 cut(s)	186, 189, 260, 337, 649
MaeIII	GTNAC	4 cut(s)	284, 512, 759, 766
MalI	GATC	2 cut(s)	99, 479
MboI	GATC	2 cut(s)	97, 477
MboII	GAAGA	2 cut(s)	487, 970
MlsI	TGGCCA	1 cut(s)	630
MluCI	AATT	2 cut(s)	462, 553
MluNI	TGGCCA	1 cut(s)	630
MlyI	GAGTC	2 cut(s)	608, 844
MmeI	TCCRAC	1 cut(s)	730
MnlI	CCTC	9 cut(s)	78, 202, 713, 784, 802, 827, 879, 913, 916
Mox20I	TGGCCA	1 cut(s)	630
MroNI	GCCGGC	1 cut(s)	868
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	3 cut(s)	314, 351, 716
Msp20I	TGGCCA	1 cut(s)	630
MspI	CCGG	4 cut(s)	191, 459, 869, 950
MspR9I	CCNGG	3 cut(s)	607, 678, 978
Mva1269I	GAATGC	1 cut(s)	687
MvaI	CCWGG	3 cut(s)	607, 678, 978
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	3 cut(s)	196, 309, 464
NaeI	GCCGGC	1 cut(s)	870
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	2 cut(s)	97, 477
NgoMIV	GCCGGC	1 cut(s)	868
NlaIII	CATG	3 cut(s)	384, 520, 592
NlaIV	GGNNCC	2 cut(s)	27, 604
NmuCI	GTSAC	1 cut(s)	759
NspI	RCATGY	1 cut(s)	520
PagI	TCATGA	1 cut(s)	588
PctI	GAATGC	1 cut(s)	687
PdiI	GCCGGC	1 cut(s)	870
PfeI	GAWTC	5 cut(s)	41, 108, 164, 702, 943
PfoI	TCCNGGA	1 cut(s)	676
PkrI	GCNGC	6 cut(s)	201, 204, 250, 327, 664, 800
PleI	GAGTC	2 cut(s)	608, 844
PpsI	GAGTC	2 cut(s)	608, 844
Psp6I	CCWGG	3 cut(s)	605, 676, 976
PspGI	CCWGG	3 cut(s)	605, 676, 976
PspN4I	GGNNCC	2 cut(s)	27, 604
PspPI	GGNCC	1 cut(s)	800
PstNI	CAGNNNCTG	2 cut(s)	309, 617
RsaI	GTAC	4 cut(s)	71, 142, 156, 975
RsaNI	GTAC	4 cut(s)	70, 141, 155, 974
SaqAI	TTAA	3 cut(s)	314, 351, 716
SatI	GCNGC	6 cut(s)	200, 203, 249, 326, 663, 799
Sau3AI	GATC	2 cut(s)	97, 477
Sau96I	GGNCC	1 cut(s)	800
ScaI	AGTACT	1 cut(s)	71
SchI	GAGTC	2 cut(s)	608, 844
ScrFI	CCNGG	3 cut(s)	607, 678, 978
SmlI	CTYRAG	2 cut(s)	206, 569
SmoI	CTYRAG	2 cut(s)	206, 569
Sse9I	AATT	2 cut(s)	462, 553
SsiI	CCGC	3 cut(s)	52, 62, 798
StyD4I	CCNGG	3 cut(s)	605, 676, 976
StyI	CCWWGG	1 cut(s)	407
TaaI	ACNGT	4 cut(s)	182, 512, 694, 759
TaqI	TCGA	3 cut(s)	39, 162, 262
TasI	AATT	2 cut(s)	462, 553
TatI	WGTACW	2 cut(s)	69, 154
TauI	GCSGC	1 cut(s)	801
TfiI	GAWTC	5 cut(s)	41, 108, 164, 702, 943
Tru1I	TTAA	3 cut(s)	314, 351, 716
Tru9I	TTAA	3 cut(s)	314, 351, 716
TscAI	CASTG	3 cut(s)	310, 424, 631
TseFI	GTSAC	1 cut(s)	759
TseI	GCWGC	5 cut(s)	199, 202, 248, 325, 662
Tsp45I	GTSAC	1 cut(s)	759
TspDTI	ATGAA	5 cut(s)	156, 369, 546, 577, 605
TspGWI	ACGGA	3 cut(s)	272, 443, 587
TspRI	CASTG	3 cut(s)	310, 424, 631
XapI	RAATTY	1 cut(s)	553
XceI	RCATGY	1 cut(s)	520
ZrmI	AGTACT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.