Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015447

Physical Location & Seq

Genomic Coordinates Forward (+)

7865435 .. 7866176

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G22270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAGGTTGATAACGCACAACATGCTTTCCTGCAACATCAAAGGAGTCACCAGTGGATTTCCTCTACGGATCGAAGCTGGGAACGTGATTGAGAAGGAAGTCGATTTCAATCCCGATTTTATCAGGCACATGTTCGCGAAGATTGAGTGGAAAGCTCTGGTGGAAGGTGCGCGTTCCATGGGATACGCTGAGTTACCGGAGGAATCTCCGGACGCCGCGGTGCTGAAATCAGATGAGCCCTTCCTTAAGAAACTCCACCACGCGTTGCTCGAGCTCCACCTTGAGGAAGGCGCGCTTGTTTGCCCTGAGACTGGACGGAAGTTTCCGGTTAATAAAGGAATCCCAAATATGCTTCTCCATGAAGACGAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008213 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018364 GO:0019538 GO:0022613 GO:0030488 GO:0031167 GO:0032259 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0036265 GO:0040007 GO:0042127 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048589 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070475 GO:0070476 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trm112p

Protein Analysis

124

Amino Acids

13.96

Weight (kDa)

5.48

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trm112p	PF03966	3 - 113	1.2e-10	Trm112p-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22270
fragaria_vesca	FvH4_5g37330
malus_domestica	MD08G1182900.v1.1 MD15G1369300.v1.1
prunus_persica	Prupe.1G517100_v2.0.a1
pyrus_communis	pycom08g15670 pycom15g33060
rosa_chinensis	RchiOBHm_Chr7g0238971
rosa_multiflora	Rmu_sc0004132.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221430
rosa_rugosa	Rorug07G0324100
rosa_samantha	Rh7AG479100 Rh7BG451700 Rh7CG496400 Rh7DG463800
rosa_wichuraiana	Rw7G039990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	137, 172, 218, 263, 293
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	2 cut(s)	216, 218
AclWI	GGATC	1 cut(s)	77
AcyI	GRCGYC	1 cut(s)	213
AfiI	CCNNNNNNNGG	2 cut(s)	283, 311
AflII	CTTAAG	1 cut(s)	245
AflIII	ACRYGT	2 cut(s)	129, 261
AgsI	TTSAA	1 cut(s)	109
AluBI	AGCT	3 cut(s)	77, 155, 274
AluI	AGCT	3 cut(s)	77, 155, 274
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	269
Aor13HI	TCCGGA	1 cut(s)	208
AspLEI	GCGC	3 cut(s)	172, 293, 295
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	269
BanII	GRGCYC	2 cut(s)	240, 276
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	276
BciVI	GTATCC	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	302
BfrI	CTTAAG	1 cut(s)	245
BfuI	GTATCC	1 cut(s)	176
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	269
BpiI	GAAGAC	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	177, 216
BsaWI	WCCGGW	3 cut(s)	196, 208, 325
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 311
Bse1I	ACTGG	2 cut(s)	51, 316
Bse8I	GATNNNNATC	1 cut(s)	108
BseAI	TCCGGA	1 cut(s)	208
BseDI	CCNNGG	2 cut(s)	177, 216
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	2 cut(s)	283, 311
BseMII	CTCAG	2 cut(s)	180, 297
BseNI	ACTGG	2 cut(s)	51, 316
BsePI	GCGCGC	1 cut(s)	291
BseYI	CCCAGC	1 cut(s)	77
Bsh1236I	CGCG	5 cut(s)	137, 172, 218, 263, 293
BsiHKAI	GWGCWC	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	3 cut(s)	197, 209, 326
BslI	CCNNNNNNNGG	2 cut(s)	283, 311
BsmAI	GTCTC	1 cut(s)	302
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	2 cut(s)	240, 276
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	69
Bsp19I	CCATGG	1 cut(s)	177
Bsp68I	TCGCGA	1 cut(s)	137
BspACI	CCGC	2 cut(s)	216, 218
BspCNI	CTCAG	2 cut(s)	181, 298
BspEI	TCCGGA	1 cut(s)	208
BspFNI	CGCG	5 cut(s)	137, 172, 218, 263, 293
BspPI	GGATC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	51, 316
BssECI	CCNNGG	2 cut(s)	177, 216
BssHII	GCGCGC	1 cut(s)	291
BssMI	GATC	1 cut(s)	69
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	177
BstACI	GRCGYC	1 cut(s)	213
BstAFI	CTTAAG	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	2 cut(s)	189, 306
BstDSI	CCRYGG	2 cut(s)	177, 216
BstFNI	CGCG	5 cut(s)	137, 172, 218, 263, 293
BstHHI	GCGC	3 cut(s)	172, 293, 295
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNSI	RCATGY	2 cut(s)	25, 133
BstUI	CGCG	5 cut(s)	137, 172, 218, 263, 293
BstV2I	GAAGAC	1 cut(s)	369
BsuI	GTATCC	1 cut(s)	176
BtgI	CCRYGG	2 cut(s)	177, 216
BtsIMutI	CAGTG	1 cut(s)	58
BtuMI	TCGCGA	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	293
CfoI	GCGC	3 cut(s)	172, 293, 295
Cfr42I	CCGCGG	1 cut(s)	219
CseI	GACGC	1 cut(s)	221
CviAII	CATG	4 cut(s)	22, 130, 178, 359
CviJI	RGCY	4 cut(s)	77, 155, 238, 274
CviKI_1	RGCY	4 cut(s)	77, 155, 238, 274
DdeI	CTNAG	2 cut(s)	189, 306
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	2 cut(s)	240, 276
Eco53kI	GAGCTC	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	177
EcoT38I	GRGCYC	2 cut(s)	240, 276
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	4 cut(s)	25, 133, 181, 362
FaiI	YATR	5 cut(s)	23, 131, 179, 350, 360
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	4 cut(s)	21, 129, 177, 358
Fnu4HI	GCNGC	1 cut(s)	216
FriOI	GRGCYC	2 cut(s)	240, 276
Fsp4HI	GCNGC	1 cut(s)	216
GlaI	GCGC	3 cut(s)	171, 292, 294
GluI	GCNGC	1 cut(s)	216
GsaI	CCCAGC	1 cut(s)	81
HapII	CCGG	3 cut(s)	197, 209, 326
HgaI	GACGC	1 cut(s)	221
HhaI	GCGC	3 cut(s)	172, 293, 295
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	4 cut(s)	25, 133, 181, 362
Hin6I	GCGC	3 cut(s)	170, 291, 293
HinP1I	GCGC	3 cut(s)	170, 291, 293
HinfI	GANTC	3 cut(s)	45, 203, 339
HpaII	CCGG	3 cut(s)	197, 209, 326
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	3 cut(s)	113, 136, 209
HpyAV	CCTTC	4 cut(s)	88, 158, 250, 281
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	2 cut(s)	189, 306
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	4 cut(s)	25, 133, 181, 362
HspAI	GCGC	3 cut(s)	170, 291, 293
Kpn2I	TCCGGA	1 cut(s)	208
KspI	CCGCGG	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	279
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	46, 192
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	2 cut(s)	151, 374
MhlI	GDGCHC	2 cut(s)	240, 276
MluI	ACGCGT	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	4 cut(s)	72, 193, 277, 361
MroI	TCCGGA	1 cut(s)	208
MseI	TTAA	3 cut(s)	246, 330, 373
MspA1I	CMGCKG	1 cut(s)	218
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	3 cut(s)	197, 209, 326
MvnI	CGCG	5 cut(s)	137, 172, 218, 263, 293
MwoI	GCNNNNNNNGC	1 cut(s)	22
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	4 cut(s)	25, 133, 181, 362
NmuCI	GTSAC	1 cut(s)	46
NruI	TCGCGA	1 cut(s)	137
NspI	RCATGY	2 cut(s)	25, 133
PaeR7I	CTCGAG	1 cut(s)	269
PauI	GCGCGC	1 cut(s)	291
PciI	ACATGT	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	203, 339
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PscI	ACATGT	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	276
PspFI	CCCAGC	1 cut(s)	77
PspXI	VCTCGAGB	1 cut(s)	269
PteI	GCGCGC	1 cut(s)	291
RruI	TCGCGA	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	276
SacII	CCGCGG	1 cut(s)	219
SaqAI	TTAA	3 cut(s)	246, 330, 373
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	1 cut(s)	69
SchI	GAGTC	1 cut(s)	54
SduI	GDGCHC	2 cut(s)	240, 276
SetI	ASST	8 cut(s)	8, 79, 87, 157, 169, 276, 282, 372
Sfr274I	CTCGAG	1 cut(s)	269
Sfr303I	CCGCGG	1 cut(s)	219
SgrBI	CCGCGG	1 cut(s)	219
SlaI	CTCGAG	1 cut(s)	269
SmlI	CTYRAG	3 cut(s)	245, 269, 281
SmoI	CTYRAG	3 cut(s)	245, 269, 281
SsiI	CCGC	2 cut(s)	216, 218
SstI	GAGCTC	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	177
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	72, 102, 270
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	2 cut(s)	203, 339
Tru1I	TTAA	3 cut(s)	246, 330, 373
Tru9I	TTAA	3 cut(s)	246, 330, 373
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	375
TspGWI	ACGGA	2 cut(s)	82, 331
TspRI	CASTG	1 cut(s)	58
Vha464I	CTTAAG	1 cut(s)	245
XceI	RCATGY	2 cut(s)	25, 133
XhoI	CTCGAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.