Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009034

Physical Location & Seq

Genomic Coordinates Forward (+)

33550963 .. 33557145

Gene Structure 6183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0324100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGCATCTGCTGGCAGTTCCAGGTCTGCGAATGGCTTCAAGAGTTCGTCGTCTAGTTCGGTTGACTGGCTTGGTAGGGAGATGCTTGAGATGCGATTGAAGGACAAGTCGGATCATCATCACGATGAGGATAGGGATAGTGAACCTGATATAATCGATGGTGCCGGTGCTGAAACAGGACATGTAATACGCACAACTGTTGGTGGTCGAGGTGGTCAATCTAGACAGACAGTGAGTTATATTTCAGAACATGTGGTTGGAACTGGCTCTTTTGGGGTTGTTTTCCAGGCGAAATGTAGAGAAACTGGAGAGATTGTTGCTATCAAGAAGGTTCTCCAAGACAAGCGTTACAAGAACCGGGAGTTACAGATTATGCAAATGTTGGATCACCCAAACATTGTTTCCCTAAAACATTGCTTCTTTTCAACTACAGACAAAGAAGAGGTTTACTTGAATCTCGTACTTGAATTTGTTCCTGAAACTGTTTACCGTATCGCAAGGAACTATAGCAGGATCAACCAGCGGATGCCTTTAATATATGTTAAACTTTATACCTACCAGATCTGTCGGGCACTTGCTTATATACATAATGGCATTGGCATCTGTCACCGTGACATCAAGCCTCAAAATTTACTTGTAAATCCACACACACATCAGCTGAAACTTTGTGATTTTGGGAGTGCAAAAGTCTTGGTAAAAGGAGAACCCAATGTGTCTTATATCTGCTCAAGATACTATCGTGCTCCAGAATTGATATTTGGTGCCACTGAGTACACAAGTGCTATTGATATTTGGTCTACAGGTTGTGTGATGGCTGAATTGCTTCTTGGACAGCCCCTGTTTCCTGGTGAAAGTGGAGTTGACCAACTAGTTGAGATCATTAAGGTTTTGGGAACTCCAACAAGGGAGGAGATAAAGTGCATGAATCCAAACTATACTGAATTTAAGTTCCCACAGATAAAGCCTCATCCATGGCACAAGGTGTTTCAAAAACGCTTGCCCCCAGAAGCAGTAGATCTTGTTTGTAGGTTTTTTCAGTATTCGCCCAATTTGCGATGCACTGCTTTGGAAGCTTGCATTCACCCTTTCTTTGATGAATTGAGAGACCCAAATACCCGCCTTCCTAATGGCCGCCCTCTCCCTCCTCTGTTTAATTTCAAAACCCAAGAGCTTCAAGGAATTGCACCTGATATTGTCGATCGACTTATTCCAGAGCATGCCCGTAAGCAGAACTTATTTATGGCTTTGCATACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048580 GO:0048581 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901332 GO:1901363 GO:1901700 GO:1903506 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

418

Amino Acids

47.55

Weight (kDa)

8.21

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	81 - 364	2e-61	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	84 - 282	1.9e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34670
fragaria_vesca	FvH4_5g37310
malus_domestica	MD08G1183100.v1.1 MD15G1369700.v1.1
prunus_persica	Prupe.1G517400_v2.0.a1
pyrus_communis	pycom08g15690 pycom15g33080
rosa_chinensis	RchiOBHm_Chr7g0238891 RchiOBHm_Chr7g0238951
rosa_laevigata	RLG00000000795
rosa_multiflora	Rmu_sc0004132.1_g000011
rosa_roxburghii	Rroxscaffold_3G00221470
rosa_rugosa	Rorug07G0323900 Rorug07G0324100
rosa_samantha	Rh7AG478600 Rh7AG478900 Rh7BG451000 Rh7BG451400 Rh7CG496100 Rh7DG463600
rosa_wichuraiana	Rw7G039950 Rw7G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	161, 761
AccI	GTMKAC	1 cut(s)	797
AciI	CCGC	3 cut(s)	523, 1117, 1132
AclWI	GGATC	3 cut(s)	120, 393, 521
AcoI	YGGCCR	1 cut(s)	1129
AcsI	RAATTY	3 cut(s)	467, 628, 941
AdeI	CACNNNGTG	1 cut(s)	982
AfaI	GTAC	2 cut(s)	462, 773
AflIII	ACRYGT	2 cut(s)	181, 250
AgsI	TTSAA	8 cut(s)	40, 100, 426, 454, 467, 989, 1159, 1175
AhlI	ACTAGT	1 cut(s)	868
AjnI	CCWGG	3 cut(s)	20, 285, 844
AjuI	GAANNNNNNNTTGG	8 cut(s)	240, 272, 385, 417, 741, 773, 810, 842
AluBI	AGCT	3 cut(s)	658, 1073, 1171
AluI	AGCT	3 cut(s)	658, 1073, 1171
Alw21I	GWGCWC	1 cut(s)	745
Alw26I	GTCTC	1 cut(s)	1098
AlwI	GGATC	3 cut(s)	120, 393, 521
AlwNI	CAGNNNCTG	1 cut(s)	838
AoxI	GGCC	1 cut(s)	1129
ApoI	RAATTY	3 cut(s)	467, 628, 941
Asp700I	GAANNNNTTC	3 cut(s)	35, 471, 822
AsuC2I	CCSGG	1 cut(s)	359
AsuHPI	GGTGA	4 cut(s)	380, 599, 860, 1073
BaeGI	GKGCMC	1 cut(s)	574
BaeI	ACNNNNGTAYC	2 cut(s)	724, 757
BanI	GGYRCC	2 cut(s)	161, 761
Bbv12I	GWGCWC	1 cut(s)	745
BccI	CCATC	2 cut(s)	152, 805
BciT130I	CCWGG	3 cut(s)	22, 287, 846
BcnI	CCSGG	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	1098
BcuI	ACTAGT	1 cut(s)	868
BfaI	CTAG	4 cut(s)	54, 222, 869, 1255
BfmI	CTRYAG	3 cut(s)	429, 505, 798
BglII	AGATCT	2 cut(s)	561, 1015
BisI	GCNGC	1 cut(s)	1132
BlsI	GCNGC	1 cut(s)	1133
Bme1390I	CCNGG	4 cut(s)	22, 287, 359, 846
BmiI	GGNNCC	2 cut(s)	163, 763
BmrFI	CCNGG	4 cut(s)	22, 287, 359, 846
BmsI	GCATC	6 cut(s)	14, 72, 81, 516, 609, 1046
BpmI	CTGGAG	2 cut(s)	327, 729
BpuEI	CTTGAG	2 cut(s)	107, 712
BpuMI	CCSGG	1 cut(s)	359
Bsa29I	ATCGAT	1 cut(s)	156
BsaBI	GATNNNNATC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	1098
BsaJI	CCNNGG	1 cut(s)	971
BsaXI	ACNNNNNCTCC	4 cut(s)	300, 330, 902, 932
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	3 cut(s)	71, 268, 310
Bse3DI	GCAATG	1 cut(s)	412
Bse8I	GATNNNNATC	1 cut(s)	117
BseBI	CCWGG	3 cut(s)	22, 287, 846
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	971
BseGI	GGATG	2 cut(s)	531, 967
BseJI	GATNNNNATC	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	1 cut(s)	759
BseNI	ACTGG	3 cut(s)	71, 268, 310
BseRI	GAGGAG	2 cut(s)	923, 1134
BseSI	GKGCMC	1 cut(s)	574
Bsh1285I	CGRYCG	1 cut(s)	1201
BshFI	GGCC	1 cut(s)	1131
BshNI	GGYRCC	2 cut(s)	161, 761
BshVI	ATCGAT	1 cut(s)	156
BsiEI	CGRYCG	1 cut(s)	1201
BsiHKAI	GWGCWC	1 cut(s)	745
BsiSI	CCGG	2 cut(s)	165, 358
BsmAI	GTCTC	1 cut(s)	1098
BsmI	GAATGC	1 cut(s)	1077
BsnI	GGCC	1 cut(s)	1131
Bso31I	GGTCTC	1 cut(s)	1098
Bsp1286I	GDGCHC	2 cut(s)	574, 745
Bsp143I	GATC	7 cut(s)	112, 385, 513, 561, 876, 1015, 1198
Bsp19I	CCATGG	1 cut(s)	971
BspACI	CCGC	3 cut(s)	523, 1117, 1132
BspANI	GGCC	1 cut(s)	1131
BspCNI	CTCAG	1 cut(s)	760
BspDI	ATCGAT	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	163, 763
BspPI	GGATC	3 cut(s)	120, 393, 521
BspT107I	GGYRCC	2 cut(s)	161, 761
BspTNI	GGTCTC	1 cut(s)	1098
BsrDI	GCAATG	1 cut(s)	412
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	3 cut(s)	71, 268, 310
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	971
BssMI	GATC	7 cut(s)	112, 385, 513, 561, 876, 1015, 1198
BssT1I	CCWWGG	1 cut(s)	971
Bst2UI	CCWGG	3 cut(s)	22, 287, 846
Bst4CI	ACNGT	5 cut(s)	199, 232, 484, 491, 611
Bst6I	CTCTTC	1 cut(s)	435
BstC8I	GCNNGC	4 cut(s)	13, 998, 1075, 1218
BstDEI	CTNAG	1 cut(s)	768
BstDSI	CCRYGG	1 cut(s)	971
BstF5I	GGATG	2 cut(s)	531, 967
BstKTI	GATC	7 cut(s)	115, 388, 516, 564, 879, 1018, 1201
BstMAI	GTCTC	1 cut(s)	1098
BstMBI	GATC	7 cut(s)	112, 385, 513, 561, 876, 1015, 1198
BstMCI	CGRYCG	1 cut(s)	1201
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 1051, 1070
BstNI	CCWGG	3 cut(s)	22, 287, 846
BstNSI	RCATGY	3 cut(s)	185, 254, 1220
BstSCI	CCNGG	4 cut(s)	20, 285, 357, 844
BstSFI	CTRYAG	3 cut(s)	429, 505, 798
BstSLI	GKGCMC	1 cut(s)	574
BstX2I	RGATCY	2 cut(s)	561, 1015
BstYI	RGATCY	2 cut(s)	561, 1015
Bsu15I	ATCGAT	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	1131
BsuTUI	ATCGAT	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	971
BtgZI	GCGATG	1 cut(s)	1069
BtsCI	GGATG	2 cut(s)	531, 967
BtsI	GCAGTG	1 cut(s)	1059
BtsIMutI	CAGTG	3 cut(s)	237, 765, 1059
Cac8I	GCNNGC	4 cut(s)	13, 998, 1075, 1218
CaiI	CAGNNNCTG	1 cut(s)	838
Cfr10I	RCCGGY	1 cut(s)	164
ClaI	ATCGAT	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	461, 772
CviAII	CATG	5 cut(s)	182, 251, 922, 972, 1217
CviQI	GTAC	2 cut(s)	461, 772
DdeI	CTNAG	1 cut(s)	768
DpnI	GATC	7 cut(s)	114, 387, 515, 563, 878, 1017, 1200
DpnII	GATC	7 cut(s)	112, 385, 513, 561, 876, 1015, 1198
DraIII	CACNNNGTG	1 cut(s)	982
EaeI	YGGCCR	1 cut(s)	1129
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Eco130I	CCWWGG	1 cut(s)	971
Eco31I	GGTCTC	1 cut(s)	1098
EcoRII	CCWGG	3 cut(s)	20, 285, 844
EcoT14I	CCWWGG	1 cut(s)	971
ErhI	CCWWGG	1 cut(s)	971
FaeI	CATG	5 cut(s)	185, 254, 925, 975, 1220
FalI	AAGNNNNNCTT	2 cut(s)	1217, 1249
FatI	CATG	5 cut(s)	181, 250, 921, 971, 1216
FauI	CCCGC	1 cut(s)	1124
FblI	GTMKAC	1 cut(s)	797
Fnu4HI	GCNGC	1 cut(s)	1132
FokI	GGATG	2 cut(s)	538, 954
Fsp4HI	GCNGC	1 cut(s)	1132
FspBI	CTAG	4 cut(s)	54, 222, 869, 1255
GluI	GCNGC	1 cut(s)	1132
GsuI	CTGGAG	2 cut(s)	327, 729
HaeIII	GGCC	1 cut(s)	1131
HapII	CCGG	2 cut(s)	165, 358
Hin1II	CATG	5 cut(s)	185, 254, 925, 975, 1220
HincII	GTYRAC	2 cut(s)	64, 862
HindII	GTYRAC	2 cut(s)	64, 862
HindIII	AAGCTT	1 cut(s)	1071
HinfI	GANTC	2 cut(s)	454, 925
HpaII	CCGG	2 cut(s)	165, 358
HphI	GGTGA	4 cut(s)	380, 599, 860, 1073
Hpy166II	GTNNAC	7 cut(s)	64, 143, 448, 487, 774, 798, 862
Hpy188I	TCNGA	2 cut(s)	112, 247
Hpy188III	TCNNGA	8 cut(s)	40, 122, 222, 325, 476, 729, 746, 1211
Hpy8I	GTNNAC	7 cut(s)	64, 143, 448, 487, 774, 798, 862
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	94, 322, 1130
HpyCH4III	ACNGT	5 cut(s)	199, 232, 484, 491, 611
HpyCH4V	TGCA	7 cut(s)	376, 683, 921, 1059, 1077, 1184, 1249
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 1051, 1070
HpyF3I	CTNAG	1 cut(s)	768
Hsp92II	CATG	5 cut(s)	185, 254, 925, 975, 1220
Kzo9I	GATC	7 cut(s)	112, 385, 513, 561, 876, 1015, 1198
LmnI	GCTCC	1 cut(s)	748
LweI	GCATC	6 cut(s)	14, 72, 81, 516, 609, 1046
MaeI	CTAG	4 cut(s)	54, 222, 869, 1255
MaeIII	GTNAC	4 cut(s)	347, 363, 605, 611
MalI	GATC	7 cut(s)	114, 387, 515, 563, 878, 1017, 1200
MboI	GATC	7 cut(s)	112, 385, 513, 561, 876, 1015, 1198
MboII	GAAGA	1 cut(s)	452
MflI	RGATCY	2 cut(s)	561, 1015
MhlI	GDGCHC	2 cut(s)	574, 745
MluCI	AATT	9 cut(s)	467, 628, 749, 818, 941, 1048, 1097, 1153, 1179
MmeI	TCCRAC	4 cut(s)	90, 238, 363, 923
MnlI	CCTC	9 cut(s)	121, 203, 436, 633, 901, 975, 1146, 1152, 1155
MroXI	GAANNNNTTC	3 cut(s)	35, 471, 822
MseI	TTAA	5 cut(s)	533, 543, 882, 945, 1152
MslI	CAYNNNNRTG	1 cut(s)	123
MspA1I	CMGCKG	2 cut(s)	523, 658
MspI	CCGG	2 cut(s)	165, 358
MspR9I	CCNGG	4 cut(s)	22, 287, 359, 846
Mva1269I	GAATGC	1 cut(s)	1077
MvaI	CCWGG	3 cut(s)	22, 287, 846
MwoI	GCNNNNNNNGC	3 cut(s)	91, 1051, 1070
NciI	CCSGG	1 cut(s)	359
NcoI	CCATGG	1 cut(s)	971
NdeII	GATC	7 cut(s)	112, 385, 513, 561, 876, 1015, 1198
NlaIII	CATG	5 cut(s)	185, 254, 925, 975, 1220
NlaIV	GGNNCC	2 cut(s)	163, 763
NmuCI	GTSAC	2 cut(s)	605, 611
NspI	RCATGY	3 cut(s)	185, 254, 1220
PaeI	GCATGC	1 cut(s)	1220
PciI	ACATGT	2 cut(s)	181, 250
PctI	GAATGC	1 cut(s)	1077
PdmI	GAANNNNTTC	3 cut(s)	35, 471, 822
PfeI	GAWTC	2 cut(s)	454, 925
PkrI	GCNGC	1 cut(s)	1133
Ple19I	CGATCG	1 cut(s)	1201
PscI	ACATGT	2 cut(s)	181, 250
Psp6I	CCWGG	3 cut(s)	20, 285, 844
PspGI	CCWGG	3 cut(s)	20, 285, 844
PspN4I	GGNNCC	2 cut(s)	163, 763
PstNI	CAGNNNCTG	1 cut(s)	838
PsuI	RGATCY	2 cut(s)	561, 1015
PvuI	CGATCG	1 cut(s)	1201
PvuII	CAGCTG	1 cut(s)	658
RsaI	GTAC	2 cut(s)	462, 773
RsaNI	GTAC	2 cut(s)	461, 772
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	5 cut(s)	533, 543, 882, 945, 1152
SatI	GCNGC	1 cut(s)	1132
Sau3AI	GATC	7 cut(s)	112, 385, 513, 561, 876, 1015, 1198
ScrFI	CCNGG	4 cut(s)	22, 287, 359, 846
SduI	GDGCHC	2 cut(s)	574, 745
SfaNI	GCATC	6 cut(s)	14, 72, 81, 516, 609, 1046
SfcI	CTRYAG	3 cut(s)	429, 505, 798
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	2 cut(s)	86, 727
SmoI	CTYRAG	2 cut(s)	86, 727
SpeI	ACTAGT	1 cut(s)	868
SphI	GCATGC	1 cut(s)	1220
Sse9I	AATT	9 cut(s)	467, 628, 749, 818, 941, 1048, 1097, 1153, 1179
SsiI	CCGC	3 cut(s)	523, 1117, 1132
SspMI	CTAG	4 cut(s)	54, 222, 869, 1255
StyD4I	CCNGG	4 cut(s)	20, 285, 357, 844
StyI	CCWWGG	1 cut(s)	971
TaaI	ACNGT	5 cut(s)	199, 232, 484, 491, 611
TaqI	TCGA	4 cut(s)	156, 208, 1197, 1201
TasI	AATT	9 cut(s)	467, 628, 749, 818, 941, 1048, 1097, 1153, 1179
TatI	WGTACW	1 cut(s)	771
TauI	GCSGC	1 cut(s)	1134
TfiI	GAWTC	2 cut(s)	454, 925
Tru1I	TTAA	5 cut(s)	533, 543, 882, 945, 1152
Tru9I	TTAA	5 cut(s)	533, 543, 882, 945, 1152
TscAI	CASTG	3 cut(s)	237, 772, 1066
TseFI	GTSAC	2 cut(s)	605, 611
Tsp45I	GTSAC	2 cut(s)	605, 611
TspDTI	ATGAA	2 cut(s)	938, 1110
TspRI	CASTG	3 cut(s)	237, 772, 1066
XapI	RAATTY	3 cut(s)	467, 628, 941
XbaI	TCTAGA	1 cut(s)	221
XceI	RCATGY	3 cut(s)	185, 254, 1220
XmiI	GTMKAC	1 cut(s)	797
XmnI	GAANNNNTTC	3 cut(s)	35, 471, 822
XspI	CTAG	4 cut(s)	54, 222, 869, 1255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.