Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009034

Physical Location & Seq

Genomic Coordinates Reverse (-)

67039319 .. 67040517

Gene Structure 1199 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG478600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGGAAAATCTCCTTGTTGTGATGAACCTGGACTCAAGAAAGGGCCCTGGACTCCCGAAGAGGATGAAAAGCTTGTGCAGTACATCCAACAACACGGTCATGGAAGCTGGCGAGCTCTTCCCAAGCTTGCAGGTCTCAACAGATGTGGCAAGAGCTGTAGGTTGAGATGGACAAATTACTTAAGACCTGATATAAAAAGAGGCCATTTTTCTCAAGAGGAGGAGCAGACCATTCTACATCTCCATTCCATCCTCGGAAACAAATGGTCAGCAATTGCAACACATCTAGACGGACGAACTGACAATGAGATCAAGAATTTCTGGAATACTCATTTGAAGAAAAAACTGATCCAGATGGGGATTGATCCGATGACCCATCAACCCAGAACTGACCTCTTCTCCAACCTCCAGGACCTTTTGCCGCTGCAATTTCAGACGTTGGATCAACTTGCTGCTACAACATTACATGATGCTGCAGAAGCTGTAGCTCAGTTGGTCAAGCTTCAATACCTGCACCAGCAATATGTACTCCAATCACATTTGTTAAACTCTAGTGTTGGCAGTTATGCTCCTCCTCCTATACAAGAAAACCTCCCAGTTTTAAATTCATCCCAACTGGTACTTGAAAATGCTAGCTCATCTTCTCAACCACTCCACTATGGAAGCTCAGTACCCCATCACAACAACCCACAAGTCCCTTTCAGTACTTTTGCAGTCCCTGAAATTGATGAAATGGGTCAATGCACGAACTTTACTTCAATGGTCAGTAGTCTCAGCCAAGCAGAGAAGAACCCACCTGAAATTTATGAATACTCCCCATACTCTTCTAATACTCCTACACCTGTGGCTGATACTTTAATTAACAATCCTGGAGATGCCAGCTGCAGCACTTCAGTAATGGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048580 GO:0048581 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901332 GO:1901363 GO:1901700 GO:1903506 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

302

Amino Acids

33.76

Weight (kDa)

5.84

Isoelectric Point (pI)

51.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	3.9e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	8.9e-15	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.4e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 115	4.2e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34670
fragaria_vesca	FvH4_5g37310
malus_domestica	MD08G1183100.v1.1 MD15G1369700.v1.1
prunus_persica	Prupe.1G517400_v2.0.a1
pyrus_communis	pycom08g15690 pycom15g33080
rosa_chinensis	RchiOBHm_Chr7g0238891 RchiOBHm_Chr7g0238951
rosa_laevigata	RLG00000000795
rosa_multiflora	Rmu_sc0004132.1_g000011
rosa_roxburghii	Rroxscaffold_3G00221470
rosa_rugosa	Rorug07G0323900 Rorug07G0324100
rosa_samantha	Rh7AG478600 Rh7AG478900 Rh7BG451000 Rh7BG451400 Rh7CG496100 Rh7DG463600
rosa_wichuraiana	Rw7G039950 Rw7G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	122, 519
AciI	CCGC	1 cut(s)	422
AclWI	GGATC	3 cut(s)	343, 359, 450
AcsI	RAATTY	3 cut(s)	316, 604, 801
AcuI	CTGAAG	1 cut(s)	876
AfaI	GTAC	5 cut(s)	83, 528, 621, 672, 706
AflII	CTTAAG	1 cut(s)	181
AgsI	TTSAA	4 cut(s)	337, 506, 626, 759
AjnI	CCWGG	4 cut(s)	28, 47, 408, 868
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	2 cut(s)	140, 776
AlwI	GGATC	3 cut(s)	343, 359, 450
AlwNI	CAGNNNCTG	2 cut(s)	482, 719
AoxI	GGCC	2 cut(s)	44, 202
ApaI	GGGCCC	1 cut(s)	48
ApeKI	GCWGC	5 cut(s)	424, 452, 473, 882, 885
ApoI	RAATTY	3 cut(s)	316, 604, 801
AspS9I	GGNCC	3 cut(s)	44, 45, 412
AsuNHI	GCTAGC	1 cut(s)	632
AvaII	GGWCC	1 cut(s)	412
BaeGI	GKGCMC	1 cut(s)	48
BanII	GRGCYC	2 cut(s)	48, 118
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	5 cut(s)	411, 439, 460, 869, 897
BccI	CCATC	5 cut(s)	162, 257, 349, 384, 684
BciT130I	CCWGG	4 cut(s)	30, 49, 410, 870
BcoDI	GTCTC	2 cut(s)	140, 776
BfaI	CTAG	3 cut(s)	287, 552, 633
BfmI	CTRYAG	4 cut(s)	157, 474, 483, 883
BfrI	CTTAAG	1 cut(s)	181
BfuAI	ACCTGC	2 cut(s)	122, 519
BisI	GCNGC	6 cut(s)	422, 425, 453, 474, 883, 886
BlsI	GCNGC	6 cut(s)	423, 426, 454, 475, 884, 887
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	4 cut(s)	30, 49, 410, 870
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	3 cut(s)	44, 45, 412
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	4 cut(s)	30, 49, 410, 870
BmrI	ACTGGG	1 cut(s)	590
BmsI	GCATC	2 cut(s)	460, 865
BmtI	GCTAGC	1 cut(s)	636
BmuI	ACTGGG	1 cut(s)	590
BpmI	CTGGAG	2 cut(s)	392, 891
BpuEI	CTTGAG	2 cut(s)	20, 198
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	47, 253
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bse1I	ACTGG	2 cut(s)	596, 621
BseBI	CCWGG	4 cut(s)	30, 49, 410, 870
BseDI	CCNNGG	2 cut(s)	47, 253
BseGI	GGATG	4 cut(s)	70, 84, 249, 608
BseMII	CTCAG	3 cut(s)	503, 681, 787
BseNI	ACTGG	2 cut(s)	596, 621
BseRI	GAGGAG	4 cut(s)	233, 236, 561, 564
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	5 cut(s)	411, 439, 460, 869, 897
BsgI	GTGCAG	2 cut(s)	98, 497
BshFI	GGCC	2 cut(s)	46, 204
BsiHKAI	GWGCWC	1 cut(s)	118
BslFI	GGGAC	2 cut(s)	680, 701
BsmAI	GTCTC	2 cut(s)	140, 776
BsmFI	GGGAC	2 cut(s)	680, 701
BsnI	GGCC	2 cut(s)	46, 204
Bso31I	GGTCTC	1 cut(s)	140
Bsp120I	GGGCCC	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	48, 118
Bsp143I	GATC	4 cut(s)	309, 348, 364, 442
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	2 cut(s)	46, 204
BspCNI	CTCAG	3 cut(s)	502, 680, 786
BspLI	GGNNCC	1 cut(s)	46
BspMAI	CTGCAG	2 cut(s)	478, 887
BspMI	ACCTGC	2 cut(s)	122, 519
BspOI	GCTAGC	1 cut(s)	636
BspPI	GGATC	3 cut(s)	343, 359, 450
BspQI	GCTCTTC	1 cut(s)	123
BspTI	CTTAAG	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	596, 621
BssECI	CCNNGG	2 cut(s)	47, 253
BssMI	GATC	4 cut(s)	309, 348, 364, 442
Bst2UI	CCWGG	4 cut(s)	30, 49, 410, 870
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	4 cut(s)	54, 123, 401, 829
BstAFI	CTTAAG	1 cut(s)	181
BstC8I	GCNNGC	5 cut(s)	110, 114, 129, 634, 880
BstDEI	CTNAG	3 cut(s)	489, 667, 773
BstF5I	GGATG	4 cut(s)	70, 84, 249, 608
BstKTI	GATC	4 cut(s)	312, 351, 367, 445
BstMAI	GTCTC	2 cut(s)	140, 776
BstMBI	GATC	4 cut(s)	309, 348, 364, 442
BstMWI	GCNNNNNNNGC	1 cut(s)	479
BstNI	CCWGG	4 cut(s)	30, 49, 410, 870
BstSCI	CCNGG	4 cut(s)	28, 47, 408, 868
BstSFI	CTRYAG	4 cut(s)	157, 474, 483, 883
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	5 cut(s)	411, 439, 460, 869, 897
BsuRI	GGCC	2 cut(s)	46, 204
BtsCI	GGATG	4 cut(s)	70, 84, 249, 608
BveI	ACCTGC	2 cut(s)	122, 519
Cac8I	GCNNGC	5 cut(s)	110, 114, 129, 634, 880
CaiI	CAGNNNCTG	2 cut(s)	482, 719
Cfr13I	GGNCC	3 cut(s)	44, 45, 412
Csp6I	GTAC	5 cut(s)	82, 527, 620, 671, 705
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	2 cut(s)	101, 467
CviQI	GTAC	5 cut(s)	82, 527, 620, 671, 705
DdeI	CTNAG	3 cut(s)	489, 667, 773
DpnI	GATC	4 cut(s)	311, 350, 366, 444
DpnII	GATC	4 cut(s)	309, 348, 364, 442
DraI	TTTAAA	1 cut(s)	603
Eam1104I	CTCTTC	4 cut(s)	54, 123, 401, 829
EarI	CTCTTC	4 cut(s)	54, 123, 401, 829
Ecl136II	GAGCTC	1 cut(s)	116
Eco24I	GRGCYC	2 cut(s)	48, 118
Eco31I	GGTCTC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	412
Eco53kI	GAGCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	876
EcoICRI	GAGCTC	1 cut(s)	116
EcoO109I	RGGNCCY	3 cut(s)	44, 45, 412
EcoRII	CCWGG	4 cut(s)	28, 47, 408, 868
EcoT38I	GRGCYC	2 cut(s)	48, 118
FaeI	CATG	2 cut(s)	104, 470
FaiI	YATR	9 cut(s)	102, 194, 468, 525, 567, 581, 660, 807, 820
FaqI	GGGAC	2 cut(s)	680, 701
FatI	CATG	2 cut(s)	100, 466
Fnu4HI	GCNGC	6 cut(s)	422, 425, 453, 474, 883, 886
FokI	GGATG	4 cut(s)	71, 77, 236, 595
FriOI	GRGCYC	2 cut(s)	48, 118
Fsp4HI	GCNGC	6 cut(s)	422, 425, 453, 474, 883, 886
FspBI	CTAG	3 cut(s)	287, 552, 633
GluI	GCNGC	6 cut(s)	422, 425, 453, 474, 883, 886
GsuI	CTGGAG	2 cut(s)	392, 891
HaeIII	GGCC	2 cut(s)	46, 204
Hin1II	CATG	2 cut(s)	104, 470
HindIII	AAGCTT	3 cut(s)	71, 125, 500
HinfI	GANTC	2 cut(s)	33, 52
Hpy188I	TCNGA	3 cut(s)	257, 369, 435
Hpy188III	TCNNGA	7 cut(s)	37, 56, 215, 287, 313, 322, 352
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	9 cut(s)	79, 131, 278, 427, 476, 514, 713, 744, 885
HpyF10VI	GCNNNNNNNGC	1 cut(s)	479
HpyF3I	CTNAG	3 cut(s)	489, 667, 773
HpySE526I	ACGT	1 cut(s)	437
Hsp92II	CATG	2 cut(s)	104, 470
Kzo9I	GATC	4 cut(s)	309, 348, 364, 442
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	2 cut(s)	223, 574
Lsp1109I	GCAGC	5 cut(s)	411, 439, 460, 869, 897
LweI	GCATC	2 cut(s)	460, 865
MaeI	CTAG	3 cut(s)	287, 552, 633
MaeII	ACGT	1 cut(s)	437
MalI	GATC	4 cut(s)	311, 350, 366, 444
MboI	GATC	4 cut(s)	309, 348, 364, 442
MboII	GAAGA	7 cut(s)	71, 110, 349, 388, 633, 799, 816
MfeI	CAATTG	1 cut(s)	273
MhlI	GDGCHC	2 cut(s)	48, 118
MluCI	AATT	8 cut(s)	175, 273, 316, 428, 604, 723, 801, 858
MlyI	GAGTC	2 cut(s)	27, 46
MmeI	TCCRAC	3 cut(s)	112, 420, 426
MseI	TTAA	5 cut(s)	182, 545, 602, 857, 861
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	2 cut(s)	424, 882
MspCI	CTTAAG	1 cut(s)	181
MspR9I	CCNGG	4 cut(s)	30, 49, 410, 870
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	4 cut(s)	30, 49, 410, 870
MwoI	GCNNNNNNNGC	1 cut(s)	479
NdeII	GATC	4 cut(s)	309, 348, 364, 442
NheI	GCTAGC	1 cut(s)	632
NlaIII	CATG	2 cut(s)	104, 470
NlaIV	GGNNCC	1 cut(s)	46
PacI	TTAATTAA	1 cut(s)	861
PciSI	GCTCTTC	1 cut(s)	123
PfoI	TCCNGGA	2 cut(s)	408, 868
PkrI	GCNGC	6 cut(s)	423, 426, 454, 475, 884, 887
PleI	GAGTC	2 cut(s)	27, 46
PpsI	GAGTC	2 cut(s)	27, 46
PpuMI	RGGWCCY	1 cut(s)	412
Psp124BI	GAGCTC	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	412
Psp6I	CCWGG	4 cut(s)	28, 47, 408, 868
PspGI	CCWGG	4 cut(s)	28, 47, 408, 868
PspN4I	GGNNCC	1 cut(s)	46
PspOMI	GGGCCC	1 cut(s)	44
PspPI	GGNCC	3 cut(s)	44, 45, 412
PspPPI	RGGWCCY	1 cut(s)	412
PstI	CTGCAG	2 cut(s)	478, 887
PstNI	CAGNNNCTG	2 cut(s)	482, 719
PvuII	CAGCTG	1 cut(s)	882
RsaI	GTAC	5 cut(s)	83, 528, 621, 672, 706
RsaNI	GTAC	5 cut(s)	82, 527, 620, 671, 705
RseI	CAYNNNNRTG	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	5 cut(s)	182, 545, 602, 857, 861
SatI	GCNGC	6 cut(s)	422, 425, 453, 474, 883, 886
Sau3AI	GATC	4 cut(s)	309, 348, 364, 442
Sau96I	GGNCC	3 cut(s)	44, 45, 412
ScaI	AGTACT	1 cut(s)	706
SchI	GAGTC	2 cut(s)	27, 46
ScrFI	CCNGG	4 cut(s)	30, 49, 410, 870
SduI	GDGCHC	2 cut(s)	48, 118
SfaNI	GCATC	2 cut(s)	460, 865
SfcI	CTRYAG	4 cut(s)	157, 474, 483, 883
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	3 cut(s)	35, 181, 213
SmoI	CTYRAG	3 cut(s)	35, 181, 213
Sse9I	AATT	8 cut(s)	175, 273, 316, 428, 604, 723, 801, 858
SsiI	CCGC	1 cut(s)	422
SspMI	CTAG	3 cut(s)	287, 552, 633
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	4 cut(s)	28, 47, 408, 868
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	440
TasI	AATT	8 cut(s)	175, 273, 316, 428, 604, 723, 801, 858
TatI	WGTACW	3 cut(s)	81, 526, 704
TauI	GCSGC	1 cut(s)	424
Tru1I	TTAA	5 cut(s)	182, 545, 602, 857, 861
Tru9I	TTAA	5 cut(s)	182, 545, 602, 857, 861
TseI	GCWGC	5 cut(s)	424, 452, 473, 882, 885
TspDTI	ATGAA	5 cut(s)	39, 81, 597, 744, 822
TspGWI	ACGGA	1 cut(s)	306
Vha464I	CTTAAG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	3 cut(s)	316, 604, 801
XbaI	TCTAGA	1 cut(s)	286
XspI	CTAG	3 cut(s)	287, 552, 633
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.