pycom15g33080
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
32423023 .. 32424443
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g33080.1

Sequence Viewer

Length: 1065 bp
ATGGGAAGATCTCCCTGTTGTGATGAAAGTGGTCTCAAGAAAGGACCCTGGACTCCTGAAGAGGATCAAAAGCTTGTGCAATACATTGAACAACATGGACATGGAAGTTGGAGAGCTCTTCCAAAGCTTGCAGGTCTCAATAGATGTGGGAAGAGTTGCAGGCTAAGATGGACAAACTACTTAAGACCCGATATCAAAAGAGGCAAATTTTCTGAAGAAGAGGAGCAAACAATTCTACATCTCCATTCTATCCTTGGAAACAAATGGTCAACAATTGCAACACACTTAGACGGCCGAACGGACAATGAAATCAAGAACTTCTGGAACACACATTTGAAGAAAAAGCTGATCCAGATGGGTTTTGATCCAATGACCCATCAGCCAAGAACTGACCTATTTTCCAACTTGTCTCAGCTTTTAGCCCTAGCTAACCTGCAGGATCTCATGCAGCAATATCAGCCATTGGAACACATTAATCAACATGCGGCAACATTACACGCAGATCAAGCCGTTCAATTGGCCAAGCTTCAATATATCCAGCATTTACTCCAATCCGTAGCTTATACAAGCAACAATGACAGTTATACCCAGAACAGAAGCACAGAGATGGAAATGGATGATCAGGCCTTTAATTTGTTAAACTCGATTAATATTCCTCCTATCAAAGAAAATCCGAATTTTAATTCACTACAACTGGAAAATCCAAGCTCATTTTCTCATGGATATGGTGGTAATTCTTCTCAACTACTCCACCATCATCAAACCCTACTGCCTCATGACCTAGCAGACCCACAAGTCCCTTTCAGTTCTCTACCATCTTTGAATAAGATCGATCATGAAATGGGCCAGGGCTCCAACTTTACAGTGGTCCGTAGTCAAGAAAATAACCCATCTGATGAATCTCCATGGTTTAATAATCTTCTATCTCCTACTGCTCCTTCTAATCCTCCAACCAGCAATGTTCCTGGAGATGCGTGCTGCAGCAGGTCTAGCTATGGAGGAAGAAGTAGTGATTCTTCATCCTACTGGCCTGACCTTTTTCTTGAGGACGCCAATTATGGTTGA

Protein Analysis

355

Amino Acids

39.97

Weight (kDa)

5.91

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 6e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 4e-15 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 6.6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 116 7.8e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 794
Acc36I ACCTGC 3 cut(s) 122, 441, 975
AciI CCGC 1 cut(s) 485
AclWI GGATC 4 cut(s) 72, 343, 359, 447
AcoI YGGCCR 2 cut(s) 292, 519
AcsI RAATTY 2 cut(s) 206, 676
AcuI CTGAAG 2 cut(s) 78, 234
AcyI GRCGYC 1 cut(s) 1050
AflII CTTAAG 1 cut(s) 181
AgsI TTSAA 5 cut(s) 89, 337, 515, 530, 823
AjnI CCWGG 3 cut(s) 47, 846, 964
AjuI GAANNNNNNNTTGG 2 cut(s) 697, 729
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 3 cut(s) 38, 140, 414
AlwI GGATC 4 cut(s) 72, 343, 359, 447
AoxI GGCC 5 cut(s) 292, 519, 624, 844, 1028
ApeKI GCWGC 3 cut(s) 448, 978, 981
ApoI RAATTY 2 cut(s) 206, 676
AseI ATTAAT 2 cut(s) 474, 648
AspS9I GGNCC 3 cut(s) 44, 844, 868
AvaII GGWCC 2 cut(s) 44, 868
BalI TGGCCA 1 cut(s) 521
BanII GRGCYC 2 cut(s) 118, 854
BarI GAAGNNNNNNTAC 2 cut(s) 1000, 1032
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 3 cut(s) 460, 965, 993
BccI CCATC 7 cut(s) 162, 349, 384, 601, 762, 823, 898
BceAI ACGGC 2 cut(s) 307, 494
BciT130I CCWGG 3 cut(s) 49, 848, 966
BclI TGATCA 1 cut(s) 619
BcoDI GTCTC 3 cut(s) 38, 140, 414
BfaI CTAG 3 cut(s) 425, 782, 990
BfmI CTRYAG 2 cut(s) 434, 979
BfrI CTTAAG 1 cut(s) 181
BfuAI ACCTGC 3 cut(s) 122, 441, 975
BglII AGATCT 1 cut(s) 8
BisI GCNGC 4 cut(s) 449, 486, 979, 982
BlsI GCNGC 4 cut(s) 450, 487, 980, 983
Bme1390I CCNGG 3 cut(s) 49, 848, 966
Bme18I GGWCC 2 cut(s) 44, 868
BmgT120I GGNCC 3 cut(s) 44, 844, 868
BmiI GGNNCC 2 cut(s) 46, 853
BmrFI CCNGG 3 cut(s) 49, 848, 966
BmsI GCATC 1 cut(s) 961
BpmI CTGGAG 1 cut(s) 987
BpuEI CTTGAG 2 cut(s) 20, 1064
Bsa29I ATCGAT 1 cut(s) 831
BsaHI GRCGYC 1 cut(s) 1050
BsaI GGTCTC 2 cut(s) 38, 140
BsaJI CCNNGG 4 cut(s) 47, 253, 847, 905
Bse1I ACTGG 2 cut(s) 699, 1031
Bse3DI GCAATG 1 cut(s) 964
BseBI CCWGG 3 cut(s) 49, 848, 966
BseCI ATCGAT 1 cut(s) 831
BseDI CCNNGG 4 cut(s) 47, 253, 847, 905
BseGI GGATG 2 cut(s) 622, 1019
BseMI GCAATG 1 cut(s) 964
BseMII CTCAG 1 cut(s) 425
BseNI ACTGG 2 cut(s) 699, 1031
BseRI GAGGAG 1 cut(s) 236
BseX3I CGGCCG 1 cut(s) 292
BseXI GCAGC 3 cut(s) 460, 965, 993
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 5 cut(s) 294, 521, 626, 846, 1030
BshVI ATCGAT 1 cut(s) 831
BsiEI CGRYCG 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 118
BslFI GGGAC 1 cut(s) 782
BsmAI GTCTC 3 cut(s) 38, 140, 414
BsmFI GGGAC 1 cut(s) 782
BsnI GGCC 5 cut(s) 294, 521, 626, 846, 1030
Bso31I GGTCTC 2 cut(s) 38, 140
Bsp1286I GDGCHC 2 cut(s) 118, 854
Bsp143I GATC 9 cut(s) 8, 64, 348, 364, 439, 502, 619, 828, 832
Bsp19I CCATGG 1 cut(s) 905
BspACI CCGC 1 cut(s) 485
BspANI GGCC 5 cut(s) 294, 521, 626, 846, 1030
BspCNI CTCAG 1 cut(s) 424
BspDI ATCGAT 1 cut(s) 831
BspHI TCATGA 2 cut(s) 775, 835
BspLI GGNNCC 2 cut(s) 46, 853
BspMAI CTGCAG 2 cut(s) 438, 983
BspMI ACCTGC 3 cut(s) 122, 441, 975
BspPI GGATC 4 cut(s) 72, 343, 359, 447
BspQI GCTCTTC 1 cut(s) 123
BspTI CTTAAG 1 cut(s) 181
BspTNI GGTCTC 2 cut(s) 38, 140
BsrDI GCAATG 1 cut(s) 964
BsrI ACTGG 2 cut(s) 699, 1031
BssECI CCNNGG 4 cut(s) 47, 253, 847, 905
BssMI GATC 9 cut(s) 8, 64, 348, 364, 439, 502, 619, 828, 832
BssNI GRCGYC 1 cut(s) 1050
BssT1I CCWWGG 2 cut(s) 253, 905
Bst2UI CCWGG 3 cut(s) 49, 848, 966
Bst4CI ACNGT 2 cut(s) 581, 865
Bst6I CTCTTC 4 cut(s) 54, 123, 146, 213
BstACI GRCGYC 1 cut(s) 1050
BstAFI CTTAAG 1 cut(s) 181
BstC8I GCNNGC 3 cut(s) 129, 161, 976
BstDEI CTNAG 3 cut(s) 164, 286, 411
BstDSI CCRYGG 1 cut(s) 905
BstF5I GGATG 2 cut(s) 622, 1019
BstKTI GATC 9 cut(s) 11, 67, 351, 367, 442, 505, 622, 831, 835
BstMAI GTCTC 3 cut(s) 38, 140, 414
BstMBI GATC 9 cut(s) 8, 64, 348, 364, 439, 502, 619, 828, 832
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 3 cut(s) 457, 506, 990
BstNI CCWGG 3 cut(s) 49, 848, 966
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 3 cut(s) 47, 846, 964
BstSFI CTRYAG 2 cut(s) 434, 979
BstV1I GCAGC 3 cut(s) 460, 965, 993
BstX2I RGATCY 2 cut(s) 8, 439
BstYI RGATCY 2 cut(s) 8, 439
BstZI CGGCCG 1 cut(s) 292
Bsu15I ATCGAT 1 cut(s) 831
BsuRI GGCC 5 cut(s) 294, 521, 626, 846, 1030
BsuTUI ATCGAT 1 cut(s) 831
BtgI CCRYGG 1 cut(s) 905
BtsCI GGATG 2 cut(s) 622, 1019
BtsIMutI CAGTG 1 cut(s) 870
BveI ACCTGC 3 cut(s) 122, 441, 975
Cac8I GCNNGC 3 cut(s) 129, 161, 976
CciI TCATGA 2 cut(s) 775, 835
Cfr13I GGNCC 3 cut(s) 44, 844, 868
ClaI ATCGAT 1 cut(s) 831
CseI GACGC 1 cut(s) 1058
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviAII CATG 8 cut(s) 95, 101, 445, 482, 719, 776, 836, 906
DdeI CTNAG 3 cut(s) 164, 286, 411
DpnI GATC 9 cut(s) 10, 66, 350, 366, 441, 504, 621, 830, 834
DpnII GATC 9 cut(s) 8, 64, 348, 364, 439, 502, 619, 828, 832
DrdI GACNNNNNNGTC 1 cut(s) 794
DseDI GACNNNNNNGTC 1 cut(s) 794
EaeI YGGCCR 2 cut(s) 292, 519
EagI CGGCCG 1 cut(s) 292
Eam1104I CTCTTC 4 cut(s) 54, 123, 146, 213
EarI CTCTTC 4 cut(s) 54, 123, 146, 213
Ecl136II GAGCTC 1 cut(s) 116
EclXI CGGCCG 1 cut(s) 292
Eco130I CCWWGG 2 cut(s) 253, 905
Eco147I AGGCCT 1 cut(s) 626
Eco24I GRGCYC 2 cut(s) 118, 854
Eco31I GGTCTC 2 cut(s) 38, 140
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 2 cut(s) 44, 868
Eco52I CGGCCG 1 cut(s) 292
Eco53kI GAGCTC 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 78, 234
EcoICRI GAGCTC 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 3 cut(s) 47, 846, 964
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 2 cut(s) 253, 905
EcoT38I GRGCYC 2 cut(s) 118, 854
ErhI CCWWGG 2 cut(s) 253, 905
FaeI CATG 8 cut(s) 98, 104, 448, 485, 722, 779, 839, 909
FaqI GGGAC 1 cut(s) 782
FatI CATG 8 cut(s) 94, 100, 444, 481, 718, 775, 835, 905
FbaI TGATCA 1 cut(s) 619
Fnu4HI GCNGC 4 cut(s) 449, 486, 979, 982
FokI GGATG 2 cut(s) 629, 1006
FriOI GRGCYC 2 cut(s) 118, 854
Fsp4HI GCNGC 4 cut(s) 449, 486, 979, 982
FspBI CTAG 3 cut(s) 425, 782, 990
GluI GCNGC 4 cut(s) 449, 486, 979, 982
GsuI CTGGAG 1 cut(s) 987
HaeIII GGCC 5 cut(s) 294, 521, 626, 846, 1030
HgaI GACGC 1 cut(s) 1058
Hin1I GRCGYC 1 cut(s) 1050
Hin1II CATG 8 cut(s) 98, 104, 448, 485, 722, 779, 839, 909
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HindIII AAGCTT 3 cut(s) 71, 125, 524
HinfI GANTC 3 cut(s) 52, 899, 1013
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 3 cut(s) 214, 675, 895
Hpy188III TCNNGA 9 cut(s) 37, 56, 313, 322, 352, 776, 836, 878, 1043
Hpy8I GTNNAC 1 cut(s) 270
HpyAV CCTTC 1 cut(s) 948
HpyCH4III ACNGT 2 cut(s) 581, 865
HpyCH4V TGCA 7 cut(s) 79, 131, 159, 278, 436, 448, 981
HpyF10VI GCNNNNNNNGC 3 cut(s) 457, 506, 990
HpyF3I CTNAG 3 cut(s) 164, 286, 411
Hsp92I GRCGYC 1 cut(s) 1050
Hsp92II CATG 8 cut(s) 98, 104, 448, 485, 722, 779, 839, 909
Ksp22I TGATCA 1 cut(s) 619
Kzo9I GATC 9 cut(s) 8, 64, 348, 364, 439, 502, 619, 828, 832
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 3 cut(s) 223, 857, 940
Lsp1109I GCAGC 3 cut(s) 460, 965, 993
LweI GCATC 1 cut(s) 961
MaeI CTAG 3 cut(s) 425, 782, 990
MalI GATC 9 cut(s) 10, 66, 350, 366, 441, 504, 621, 830, 834
MboI GATC 9 cut(s) 8, 64, 348, 364, 439, 502, 619, 828, 832
MfeI CAATTG 2 cut(s) 273, 515
MflI RGATCY 2 cut(s) 8, 439
MhlI GDGCHC 2 cut(s) 118, 854
MlsI TGGCCA 1 cut(s) 521
MluCI AATT 9 cut(s) 206, 231, 273, 515, 631, 676, 682, 733, 1054
MluNI TGGCCA 1 cut(s) 521
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 4 cut(s) 89, 426, 879, 974
MnlI CCTC 8 cut(s) 55, 194, 214, 666, 783, 957, 992, 1039
Mox20I TGGCCA 1 cut(s) 521
MscI TGGCCA 1 cut(s) 521
MseI TTAA 7 cut(s) 182, 474, 630, 638, 648, 681, 912
MslI CAYNNNNRTG 3 cut(s) 99, 605, 723
Msp20I TGGCCA 1 cut(s) 521
MspCI CTTAAG 1 cut(s) 181
MspR9I CCNGG 3 cut(s) 49, 848, 966
MunI CAATTG 2 cut(s) 273, 515
MvaI CCWGG 3 cut(s) 49, 848, 966
MwoI GCNNNNNNNGC 3 cut(s) 457, 506, 990
NcoI CCATGG 1 cut(s) 905
NdeII GATC 9 cut(s) 8, 64, 348, 364, 439, 502, 619, 828, 832
NlaIII CATG 8 cut(s) 98, 104, 448, 485, 722, 779, 839, 909
NlaIV GGNNCC 2 cut(s) 46, 853
NspI RCATGY 1 cut(s) 485
PagI TCATGA 2 cut(s) 775, 835
PceI AGGCCT 1 cut(s) 626
PciSI GCTCTTC 1 cut(s) 123
PfeI GAWTC 2 cut(s) 899, 1013
PfoI TCCNGGA 1 cut(s) 964
PkrI GCNGC 4 cut(s) 450, 487, 980, 983
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PpuMI RGGWCCY 1 cut(s) 44
PshBI ATTAAT 2 cut(s) 474, 648
Psp124BI GAGCTC 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 3 cut(s) 47, 846, 964
PspGI CCWGG 3 cut(s) 47, 846, 964
PspN4I GGNNCC 2 cut(s) 46, 853
PspPI GGNCC 3 cut(s) 44, 844, 868
PspPPI RGGWCCY 1 cut(s) 44
PstI CTGCAG 2 cut(s) 438, 983
PsuI RGATCY 2 cut(s) 8, 439
RseI CAYNNNNRTG 3 cut(s) 99, 605, 723
SacI GAGCTC 1 cut(s) 118
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 7 cut(s) 182, 474, 630, 638, 648, 681, 912
SatI GCNGC 4 cut(s) 449, 486, 979, 982
Sau3AI GATC 9 cut(s) 8, 64, 348, 364, 439, 502, 619, 828, 832
Sau96I GGNCC 3 cut(s) 44, 844, 868
SbfI CCTGCAGG 1 cut(s) 438
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 3 cut(s) 49, 848, 966
SdaI CCTGCAGG 1 cut(s) 438
SduI GDGCHC 2 cut(s) 118, 854
SfaNI GCATC 1 cut(s) 961
SfcI CTRYAG 2 cut(s) 434, 979
SinI GGWCC 2 cut(s) 44, 868
SmiMI CAYNNNNRTG 3 cut(s) 99, 605, 723
SmlI CTYRAG 3 cut(s) 35, 181, 1043
SmoI CTYRAG 3 cut(s) 35, 181, 1043
Sse8387I CCTGCAGG 1 cut(s) 438
Sse9I AATT 9 cut(s) 206, 231, 273, 515, 631, 676, 682, 733, 1054
SseBI AGGCCT 1 cut(s) 626
SsiI CCGC 1 cut(s) 485
SspI AATATT 1 cut(s) 652
SspMI CTAG 3 cut(s) 425, 782, 990
SstI GAGCTC 1 cut(s) 118
StuI AGGCCT 1 cut(s) 626
StyD4I CCNGG 3 cut(s) 47, 846, 964
StyI CCWWGG 2 cut(s) 253, 905
TaaI ACNGT 2 cut(s) 581, 865
TaqI TCGA 2 cut(s) 644, 831
TasI AATT 9 cut(s) 206, 231, 273, 515, 631, 676, 682, 733, 1054
TauI GCSGC 1 cut(s) 488
TfiI GAWTC 2 cut(s) 899, 1013
Tru1I TTAA 7 cut(s) 182, 474, 630, 638, 648, 681, 912
Tru9I TTAA 7 cut(s) 182, 474, 630, 638, 648, 681, 912
TscAI CASTG 1 cut(s) 870
TseI GCWGC 3 cut(s) 448, 978, 981
TspDTI ATGAA 5 cut(s) 39, 321, 852, 912, 1008
TspGWI ACGGA 3 cut(s) 314, 544, 860
TspRI CASTG 1 cut(s) 870
Vha464I CTTAAG 1 cut(s) 181
VpaK11BI GGWCC 2 cut(s) 44, 868
VspI ATTAAT 2 cut(s) 474, 648
XapI RAATTY 2 cut(s) 206, 676
XceI RCATGY 1 cut(s) 485
XcmI CCANNNNNNNNNTGG 2 cut(s) 251, 862
XspI CTAG 3 cut(s) 425, 782, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.