Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0009034

Physical Location & Seq

Genomic Coordinates Forward (+)

15443202 .. 15444814

Gene Structure 1613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGGAGATCTCCCTGTAGTGATGAAAGTGGTCTCAAGAAAGGACCTTGGACTCCAGAAGATGATCAAAAGCTTGTGCAATATATTGAACAACATGGCCATGGAAGTTGGAGAGCTCTTCCAAAGCTTGCAGGTCTCAATAGATGTGGCAAGAGTTGCAGGCTAAGATGGACGAACTACTTAAGACCTGATATCAAAAGAGGCAAATTTTCTGAAGAAGAGGAGCAAACAATTCTTCATCTCCATTCTATCCTTGGAAACAAATGGTCAGCAATTGCAACACACTTAGACGGCCGAACGGACAATGAAATCAAGAACTTCTGGAACACACATTTGAAGAAGAAGCTGATCGATCAGATCGCTTTTGATCCAATGACCCATCAGCCAAGAACTGATCTATTTTCCAGCTTATCTCAGCTTTTAGCCCTAGCTAACCTGCAGGATCTCATGCAGCAATATCAGCCCGTAGATCACATTAATCAACATGCTGCAACATTACAAGCAGATCAAGCAGTTCAGTTGTCCAAGCTTCACTACATGCAGCATTTACTTCAATCCGTACCTTATACAAGCAACACTGACAATTACAGGCACAACAGAAACACCGAGATGGAAATGGAAATGGATGATCAGGCTTTTAATTTGCTAAACTCAATTAATATTTCTCCCATCAAAGAAAACCCAAATTTTAATTCACCACAACTGGAAAATCCAAGCTCATTTTCTGATCACGGATATGGTCGTAATTCTTCTCAACCACTCCACCAACATCAAACCCTACTGCCTTATGACCTAGCAGACCCACAAGTCCCTTTCAGTTCTCTACCATCTTTGAATAACAGCGATCATGAAATGGGCCAGGGCTCCAACTTTAAAATGGTCAGTAGTCAAGAAAATAACCTACCCGATGAATCTCCATGGTTTAATAATCTTTTATCTCCTACTGCTCCCTCTATTCCTCCCTCTATTCCTCCAACCAGCAATGTTCCTGGAGATGCGTGCTGCAGCAGTTCTACCTATGGAGGCAGAAGTAGTACTTCTTCATCCTACTGGCCTGAACTATTTCTTGAGGACGCCAATTATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048580 GO:0048581 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901332 GO:1901363 GO:1901700 GO:1903506 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

363

Amino Acids

40.9

Weight (kDa)

5.69

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	4.5e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	9.3e-15	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	6.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 115	2.4e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34670
fragaria_vesca	FvH4_5g37310
malus_domestica	MD08G1183100.v1.1 MD15G1369700.v1.1
prunus_persica	Prupe.1G517400_v2.0.a1
pyrus_communis	pycom08g15690 pycom15g33080
rosa_chinensis	RchiOBHm_Chr7g0238891 RchiOBHm_Chr7g0238951
rosa_laevigata	RLG00000000795
rosa_multiflora	Rmu_sc0004132.1_g000011
rosa_roxburghii	Rroxscaffold_3G00221470
rosa_rugosa	Rorug07G0323900 Rorug07G0324100
rosa_samantha	Rh7AG478600 Rh7AG478900 Rh7BG451000 Rh7BG451400 Rh7CG496100 Rh7DG463600
rosa_wichuraiana	Rw7G039950 Rw7G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	806
Acc36I	ACCTGC	2 cut(s)	122, 444
AclWI	GGATC	2 cut(s)	362, 450
AcoI	YGGCCR	2 cut(s)	97, 292
AcsI	RAATTY	2 cut(s)	206, 685
AcuI	CTGAAG	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	1074
AfaI	GTAC	2 cut(s)	561, 1036
AflII	CTTAAG	1 cut(s)	181
AgsI	TTSAA	4 cut(s)	89, 337, 554, 835
AjnI	CCWGG	2 cut(s)	858, 988
AjuI	GAANNNNNNNTTGG	4 cut(s)	676, 706, 708, 738
AluBI	AGCT	9 cut(s)	73, 116, 127, 346, 408, 418, 431, 529, 717
AluI	AGCT	9 cut(s)	73, 116, 127, 346, 408, 418, 431, 529, 717
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	2 cut(s)	38, 140
AlwI	GGATC	2 cut(s)	362, 450
AoxI	GGCC	4 cut(s)	97, 292, 856, 1052
ApeKI	GCWGC	5 cut(s)	451, 488, 541, 1002, 1005
ApoI	RAATTY	2 cut(s)	206, 685
AseI	ATTAAT	2 cut(s)	477, 657
Asp700I	GAANNNNTTC	1 cut(s)	1062
AspS9I	GGNCC	2 cut(s)	44, 856
AsuHPI	GGTGA	1 cut(s)	687
AvaII	GGWCC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	2 cut(s)	118, 866
BarI	GAAGNNNNNNTAC	2 cut(s)	1024, 1056
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	5 cut(s)	463, 475, 553, 989, 1017
BccI	CCATC	5 cut(s)	162, 387, 604, 677, 835
BceAI	ACGGC	1 cut(s)	307
BciT130I	CCWGG	2 cut(s)	860, 990
BclI	TGATCA	3 cut(s)	64, 628, 727
BcoDI	GTCTC	2 cut(s)	38, 140
BfaI	CTAG	2 cut(s)	428, 794
BfmI	CTRYAG	3 cut(s)	16, 437, 1003
BfrI	CTTAAG	1 cut(s)	181
BfuAI	ACCTGC	2 cut(s)	122, 444
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	5 cut(s)	452, 489, 542, 1003, 1006
BlsI	GCNGC	5 cut(s)	453, 490, 543, 1004, 1007
BmcAI	AGTACT	1 cut(s)	1036
Bme1390I	CCNGG	2 cut(s)	860, 990
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	44, 856
BmiI	GGNNCC	1 cut(s)	865
BmrFI	CCNGG	2 cut(s)	860, 990
BmsI	GCATC	1 cut(s)	985
BpmI	CTGGAG	2 cut(s)	39, 1011
BpuEI	CTTGAG	2 cut(s)	20, 1088
Bsa29I	ATCGAT	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	1074
BsaI	GGTCTC	2 cut(s)	38, 140
BsaJI	CCNNGG	5 cut(s)	47, 100, 253, 859, 917
Bse1I	ACTGG	2 cut(s)	708, 1055
Bse3DI	GCAATG	1 cut(s)	988
BseBI	CCWGG	2 cut(s)	860, 990
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	5 cut(s)	47, 100, 253, 859, 917
BseGI	GGATG	2 cut(s)	631, 1043
BseMI	GCAATG	1 cut(s)	988
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	2 cut(s)	708, 1055
BseRI	GAGGAG	1 cut(s)	236
BseX3I	CGGCCG	1 cut(s)	292
BseXI	GCAGC	5 cut(s)	463, 475, 553, 989, 1017
Bsh1285I	CGRYCG	1 cut(s)	295
BshFI	GGCC	4 cut(s)	99, 294, 858, 1054
BshVI	ATCGAT	1 cut(s)	351
BsiEI	CGRYCG	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	794
BsmAI	GTCTC	2 cut(s)	38, 140
BsmFI	GGGAC	1 cut(s)	794
BsnI	GGCC	4 cut(s)	99, 294, 858, 1054
Bso31I	GGTCTC	2 cut(s)	38, 140
Bsp1286I	GDGCHC	2 cut(s)	118, 866
Bsp19I	CCATGG	2 cut(s)	100, 917
BspANI	GGCC	4 cut(s)	99, 294, 858, 1054
BspCNI	CTCAG	1 cut(s)	427
BspDI	ATCGAT	1 cut(s)	351
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	1 cut(s)	865
BspMAI	CTGCAG	2 cut(s)	441, 1007
BspMI	ACCTGC	2 cut(s)	122, 444
BspPI	GGATC	2 cut(s)	362, 450
BspQI	GCTCTTC	1 cut(s)	123
BspTI	CTTAAG	1 cut(s)	181
BspTNI	GGTCTC	2 cut(s)	38, 140
BsrDI	GCAATG	1 cut(s)	988
BsrI	ACTGG	2 cut(s)	708, 1055
BssECI	CCNNGG	5 cut(s)	47, 100, 253, 859, 917
BssNI	GRCGYC	1 cut(s)	1074
BssT1I	CCWWGG	4 cut(s)	47, 100, 253, 917
Bst2UI	CCWGG	2 cut(s)	860, 990
Bst6I	CTCTTC	2 cut(s)	123, 213
BstACI	GRCGYC	1 cut(s)	1074
BstAFI	CTTAAG	1 cut(s)	181
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstC8I	GCNNGC	3 cut(s)	129, 161, 1000
BstDEI	CTNAG	3 cut(s)	164, 286, 414
BstDSI	CCRYGG	2 cut(s)	100, 917
BstF5I	GGATG	2 cut(s)	631, 1043
BstMAI	GTCTC	2 cut(s)	38, 140
BstMCI	CGRYCG	1 cut(s)	295
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 460, 509
BstNI	CCWGG	2 cut(s)	860, 990
BstNSI	RCATGY	2 cut(s)	488, 541
BstSCI	CCNGG	2 cut(s)	858, 988
BstSFI	CTRYAG	3 cut(s)	16, 437, 1003
BstV1I	GCAGC	5 cut(s)	463, 475, 553, 989, 1017
BstX2I	RGATCY	2 cut(s)	8, 442
BstYI	RGATCY	2 cut(s)	8, 442
BstZI	CGGCCG	1 cut(s)	292
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	4 cut(s)	99, 294, 858, 1054
BsuTUI	ATCGAT	1 cut(s)	351
BtgI	CCRYGG	2 cut(s)	100, 917
BtsCI	GGATG	2 cut(s)	631, 1043
BtsIMutI	CAGTG	1 cut(s)	576
BveI	ACCTGC	2 cut(s)	122, 444
Cac8I	GCNNGC	3 cut(s)	129, 161, 1000
CciI	TCATGA	1 cut(s)	847
Cfr13I	GGNCC	2 cut(s)	44, 856
ClaI	ATCGAT	1 cut(s)	351
CseI	GACGC	1 cut(s)	1082
Csp6I	GTAC	2 cut(s)	560, 1035
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	7 cut(s)	95, 101, 448, 485, 538, 848, 918
CviQI	GTAC	2 cut(s)	560, 1035
DdeI	CTNAG	3 cut(s)	164, 286, 414
DraI	TTTAAA	1 cut(s)	874
DrdI	GACNNNNNNGTC	1 cut(s)	806
DseDI	GACNNNNNNGTC	1 cut(s)	806
EaeI	YGGCCR	2 cut(s)	97, 292
EagI	CGGCCG	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	123, 213
EarI	CTCTTC	2 cut(s)	123, 213
Ecl136II	GAGCTC	1 cut(s)	116
EclXI	CGGCCG	1 cut(s)	292
Eco130I	CCWWGG	4 cut(s)	47, 100, 253, 917
Eco24I	GRGCYC	2 cut(s)	118, 866
Eco31I	GGTCTC	2 cut(s)	38, 140
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	44
Eco52I	CGGCCG	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	858, 988
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	4 cut(s)	47, 100, 253, 917
EcoT38I	GRGCYC	2 cut(s)	118, 866
ErhI	CCWWGG	4 cut(s)	47, 100, 253, 917
FaeI	CATG	7 cut(s)	98, 104, 451, 488, 541, 851, 921
FalI	AAGNNNNNCTT	2 cut(s)	1021, 1053
FaqI	GGGAC	1 cut(s)	794
FatI	CATG	7 cut(s)	94, 100, 447, 484, 537, 847, 917
FbaI	TGATCA	3 cut(s)	64, 628, 727
Fnu4HI	GCNGC	5 cut(s)	452, 489, 542, 1003, 1006
FokI	GGATG	2 cut(s)	638, 1030
FriOI	GRGCYC	2 cut(s)	118, 866
Fsp4HI	GCNGC	5 cut(s)	452, 489, 542, 1003, 1006
FspBI	CTAG	2 cut(s)	428, 794
GluI	GCNGC	5 cut(s)	452, 489, 542, 1003, 1006
GsuI	CTGGAG	2 cut(s)	39, 1011
HaeIII	GGCC	4 cut(s)	99, 294, 858, 1054
HgaI	GACGC	1 cut(s)	1082
Hin1I	GRCGYC	1 cut(s)	1074
Hin1II	CATG	7 cut(s)	98, 104, 451, 488, 541, 851, 921
HindIII	AAGCTT	3 cut(s)	71, 125, 527
HinfI	GANTC	2 cut(s)	52, 911
HphI	GGTGA	1 cut(s)	687
Hpy188I	TCNGA	3 cut(s)	214, 357, 727
Hpy188III	TCNNGA	7 cut(s)	37, 56, 313, 322, 848, 890, 1067
HpyCH4V	TGCA	9 cut(s)	79, 131, 159, 278, 439, 451, 491, 541, 1005
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 460, 509
HpyF3I	CTNAG	3 cut(s)	164, 286, 414
Hsp92I	GRCGYC	1 cut(s)	1074
Hsp92II	CATG	7 cut(s)	98, 104, 451, 488, 541, 851, 921
Ksp22I	TGATCA	3 cut(s)	64, 628, 727
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	3 cut(s)	223, 869, 952
Lsp1109I	GCAGC	5 cut(s)	463, 475, 553, 989, 1017
LweI	GCATC	1 cut(s)	985
MaeI	CTAG	2 cut(s)	428, 794
MboII	GAAGA	9 cut(s)	71, 110, 227, 227, 230, 349, 352, 741, 1032
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	2 cut(s)	8, 442
MhlI	GDGCHC	2 cut(s)	118, 866
MlsI	TGGCCA	1 cut(s)	99
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	3 cut(s)	89, 891, 998
MnlI	CCTC	8 cut(s)	194, 214, 961, 969, 973, 981, 1016, 1063
Mox20I	TGGCCA	1 cut(s)	99
MroXI	GAANNNNTTC	1 cut(s)	1062
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	7 cut(s)	182, 477, 639, 657, 690, 873, 924
MslI	CAYNNNNRTG	3 cut(s)	99, 608, 735
Msp20I	TGGCCA	1 cut(s)	99
MspCI	CTTAAG	1 cut(s)	181
MspR9I	CCNGG	2 cut(s)	860, 990
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	2 cut(s)	860, 990
MwoI	GCNNNNNNNGC	3 cut(s)	156, 460, 509
NcoI	CCATGG	2 cut(s)	100, 917
NlaIII	CATG	7 cut(s)	98, 104, 451, 488, 541, 851, 921
NlaIV	GGNNCC	1 cut(s)	865
NspI	RCATGY	2 cut(s)	488, 541
PagI	TCATGA	1 cut(s)	847
PciSI	GCTCTTC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	1062
PfeI	GAWTC	1 cut(s)	911
PfoI	TCCNGGA	1 cut(s)	988
PkrI	GCNGC	5 cut(s)	453, 490, 543, 1004, 1007
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PpuMI	RGGWCCY	1 cut(s)	44
PshBI	ATTAAT	2 cut(s)	477, 657
Psp124BI	GAGCTC	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	858, 988
PspGI	CCWGG	2 cut(s)	858, 988
PspN4I	GGNNCC	1 cut(s)	865
PspPI	GGNCC	2 cut(s)	44, 856
PspPPI	RGGWCCY	1 cut(s)	44
PstI	CTGCAG	2 cut(s)	441, 1007
PsuI	RGATCY	2 cut(s)	8, 442
RsaI	GTAC	2 cut(s)	561, 1036
RsaNI	GTAC	2 cut(s)	560, 1035
RseI	CAYNNNNRTG	3 cut(s)	99, 608, 735
SacI	GAGCTC	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	7 cut(s)	182, 477, 639, 657, 690, 873, 924
SatI	GCNGC	5 cut(s)	452, 489, 542, 1003, 1006
Sau96I	GGNCC	2 cut(s)	44, 856
SbfI	CCTGCAGG	1 cut(s)	441
ScaI	AGTACT	1 cut(s)	1036
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	860, 990
SdaI	CCTGCAGG	1 cut(s)	441
SduI	GDGCHC	2 cut(s)	118, 866
SfaNI	GCATC	1 cut(s)	985
SfcI	CTRYAG	3 cut(s)	16, 437, 1003
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	3 cut(s)	99, 608, 735
SmlI	CTYRAG	3 cut(s)	35, 181, 1067
SmoI	CTYRAG	3 cut(s)	35, 181, 1067
Sse8387I	CCTGCAGG	1 cut(s)	441
SspI	AATATT	1 cut(s)	661
SspMI	CTAG	2 cut(s)	428, 794
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	2 cut(s)	858, 988
StyI	CCWWGG	4 cut(s)	47, 100, 253, 917
TaqI	TCGA	1 cut(s)	351
TatI	WGTACW	1 cut(s)	1034
TfiI	GAWTC	1 cut(s)	911
Tru1I	TTAA	7 cut(s)	182, 477, 639, 657, 690, 873, 924
Tru9I	TTAA	7 cut(s)	182, 477, 639, 657, 690, 873, 924
TscAI	CASTG	1 cut(s)	583
TseI	GCWGC	5 cut(s)	451, 488, 541, 1002, 1005
TspDTI	ATGAA	6 cut(s)	39, 227, 321, 864, 924, 1032
TspGWI	ACGGA	3 cut(s)	314, 547, 747
TspRI	CASTG	1 cut(s)	583
Vha464I	CTTAAG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	44
VspI	ATTAAT	2 cut(s)	477, 657
XapI	RAATTY	2 cut(s)	206, 685
XceI	RCATGY	2 cut(s)	488, 541
XcmI	CCANNNNNNNNNTGG	2 cut(s)	251, 874
XmnI	GAANNNNTTC	1 cut(s)	1062
XspI	CTAG	2 cut(s)	428, 794
ZrmI	AGTACT	1 cut(s)	1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.