Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009034

Physical Location & Seq

Genomic Coordinates Reverse (-)

67105904 .. 67107188

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG478900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGGAAAATCTCTTTGTTGTGATGAACCTGGACTCAAGAAAGGACCCTGGACTCCCGAAGAGGATCAAAAGCTTGTGCAGTACATCCAACAACACGGTCATGGAAGCTGGCGAGCTCTTCCCAAGCTTGCAGGTCTCAACAGATGTGGCAAGAGCTGTAGGTTGAGATGGACAAATTACTTAAGACCTGATATAAAAAGAGGCAATTTTTCTCAAGAGGAGGAGCAGACCATTCTACATCTCCATTCTATCCTCGGAAACAAATGGTCAGCAATTGCAACACATCTAGACGGACGAACTGACAATGAGATCAAGAATTTCTGGAATACTCATTTGAAGAAAAAACTGATCCAGATGGGGATTGATCCGATGACCCATCAACCCAGAACTGACCTCTTCTCCAACCTCCAGGACCTTTTGCCGCCGCAATATCAGCTGTTGGATCAACATGCTGCAACAACATTACATGGTGCTGCAGAGGCTGTAGCTCAGTTGGTCAAGCTTCAATACCTGCAGCAGCAATATGTACTCCAATCACATTTGTTAAACCCGAGTGTTGGTAGTTATGCTCCTCCTCCCATAAAAGAAAACCTCCCAGTTTTAAATTCATCCCATGTAGTACTTGAAAATCCTAGCTCATTTTCTCAACCACTCCACTATGGAACCTTGGAACCCCATCAGGACGACCCACAAGTCCGTTTCAGTACTTTTGCAGTACCTGAAATTGATGAGATGGGTCAAGGCTCCAAATTTACTCCAATGGTCAGTAGTCTCTGCCAAGCAGAGAAGAACCCACTTGAAATTGATGAATACTGTCCATGGTTTCTTCAGTACTCTTCTAATATTCCTACACCTTTGGGTAGTACTTTAATTAACAATCCTGGAGATGCCAGCTGCAGCACTTCTAGTAATGGAGGAATAAGAAGTAGTACTTCTTCTTCCTACTGGCCCGAGCTTTTTCTTGAGGAAACCAAAACCAATTATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048580 GO:0048581 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901332 GO:1901363 GO:1901700 GO:1903506 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

329

Amino Acids

37.02

Weight (kDa)

6.0

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	4.8e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	2.2e-15	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	7.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 115	4.6e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34670
fragaria_vesca	FvH4_5g37310
malus_domestica	MD08G1183100.v1.1 MD15G1369700.v1.1
prunus_persica	Prupe.1G517400_v2.0.a1
pyrus_communis	pycom08g15690 pycom15g33080
rosa_chinensis	RchiOBHm_Chr7g0238891 RchiOBHm_Chr7g0238951
rosa_laevigata	RLG00000000795
rosa_multiflora	Rmu_sc0004132.1_g000011
rosa_roxburghii	Rroxscaffold_3G00221470
rosa_rugosa	Rorug07G0323900 Rorug07G0324100
rosa_samantha	Rh7AG478600 Rh7AG478900 Rh7BG451000 Rh7BG451400 Rh7CG496100 Rh7DG463600
rosa_wichuraiana	Rw7G039950 Rw7G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	692
Acc36I	ACCTGC	2 cut(s)	122, 519
AciI	CCGC	2 cut(s)	422, 425
AclWI	GGATC	4 cut(s)	72, 343, 359, 450
AcsI	RAATTY	3 cut(s)	316, 604, 749
AcuI	CTGAAG	1 cut(s)	812
AfaI	GTAC	8 cut(s)	83, 528, 621, 706, 717, 833, 865, 931
AfiI	CCNNNNNNNGG	1 cut(s)	557
AflII	CTTAAG	1 cut(s)	181
AgsI	TTSAA	4 cut(s)	337, 506, 626, 800
AjnI	CCWGG	4 cut(s)	28, 47, 408, 880
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	2 cut(s)	140, 776
AlwI	GGATC	4 cut(s)	72, 343, 359, 450
AlwNI	CAGNNNCTG	2 cut(s)	482, 719
Ama87I	CYCGRG	2 cut(s)	550, 950
AoxI	GGCC	1 cut(s)	947
ApeKI	GCWGC	6 cut(s)	452, 473, 514, 517, 894, 897
ApoI	RAATTY	3 cut(s)	316, 604, 749
AspS9I	GGNCC	3 cut(s)	44, 412, 948
AvaI	CYCGRG	2 cut(s)	550, 950
AvaII	GGWCC	2 cut(s)	44, 412
BanII	GRGCYC	1 cut(s)	118
BarI	GAAGNNNNNNTAC	4 cut(s)	919, 922, 951, 954
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	6 cut(s)	439, 460, 526, 529, 881, 909
BccI	CCATC	5 cut(s)	162, 349, 384, 684, 727
BciT130I	CCWGG	4 cut(s)	30, 49, 410, 882
BcoDI	GTCTC	2 cut(s)	140, 776
BfaI	CTAG	3 cut(s)	287, 633, 906
BfmI	CTRYAG	5 cut(s)	157, 474, 483, 512, 895
BfrI	CTTAAG	1 cut(s)	181
BfuAI	ACCTGC	2 cut(s)	122, 519
BisI	GCNGC	8 cut(s)	422, 425, 453, 474, 515, 518, 895, 898
BlsI	GCNGC	8 cut(s)	423, 426, 454, 475, 516, 519, 896, 899
BmcAI	AGTACT	5 cut(s)	621, 706, 833, 865, 931
Bme1390I	CCNGG	4 cut(s)	30, 49, 410, 882
Bme18I	GGWCC	2 cut(s)	44, 412
BmeT110I	CYCGRG	2 cut(s)	550, 950
BmgT120I	GGNCC	3 cut(s)	44, 412, 948
BmiI	GGNNCC	4 cut(s)	46, 664, 672, 745
BmrFI	CCNGG	4 cut(s)	30, 49, 410, 882
BmrI	ACTGGG	1 cut(s)	590
BmsI	GCATC	1 cut(s)	877
BmuI	ACTGGG	1 cut(s)	590
BpmI	CTGGAG	2 cut(s)	392, 903
BpuEI	CTTGAG	3 cut(s)	20, 198, 983
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	4 cut(s)	47, 253, 666, 818
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse1I	ACTGG	2 cut(s)	596, 950
BseBI	CCWGG	4 cut(s)	30, 49, 410, 882
BseDI	CCNNGG	4 cut(s)	47, 253, 666, 818
BseGI	GGATG	2 cut(s)	84, 608
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMII	CTCAG	1 cut(s)	503
BseNI	ACTGG	2 cut(s)	596, 950
BseRI	GAGGAG	4 cut(s)	233, 236, 561, 564
BseXI	GCAGC	6 cut(s)	439, 460, 526, 529, 881, 909
BsgI	GTGCAG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	949
BsiHKAI	GWGCWC	1 cut(s)	118
BsiHKCI	CYCGRG	2 cut(s)	550, 950
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmAI	GTCTC	2 cut(s)	140, 776
BsnI	GGCC	1 cut(s)	949
Bso31I	GGTCTC	1 cut(s)	140
BsoBI	CYCGRG	2 cut(s)	550, 950
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	5 cut(s)	64, 309, 348, 364, 442
Bsp19I	CCATGG	1 cut(s)	818
BspACI	CCGC	2 cut(s)	422, 425
BspANI	GGCC	1 cut(s)	949
BspCNI	CTCAG	1 cut(s)	502
BspLI	GGNNCC	4 cut(s)	46, 664, 672, 745
BspMAI	CTGCAG	3 cut(s)	478, 516, 899
BspMI	ACCTGC	2 cut(s)	122, 519
BspPI	GGATC	4 cut(s)	72, 343, 359, 450
BspQI	GCTCTTC	1 cut(s)	123
BspTI	CTTAAG	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	596, 950
BssECI	CCNNGG	4 cut(s)	47, 253, 666, 818
BssMI	GATC	5 cut(s)	64, 309, 348, 364, 442
BssT1I	CCWWGG	2 cut(s)	666, 818
Bst2UI	CCWGG	4 cut(s)	30, 49, 410, 882
Bst4CI	ACNGT	2 cut(s)	98, 815
Bst6I	CTCTTC	4 cut(s)	54, 123, 401, 841
BstAFI	CTTAAG	1 cut(s)	181
BstC8I	GCNNGC	4 cut(s)	110, 114, 129, 892
BstDEI	CTNAG	1 cut(s)	489
BstDSI	CCRYGG	1 cut(s)	818
BstF5I	GGATG	2 cut(s)	84, 608
BstKTI	GATC	5 cut(s)	67, 312, 351, 367, 445
BstMAI	GTCTC	2 cut(s)	140, 776
BstMBI	GATC	5 cut(s)	64, 309, 348, 364, 442
BstMWI	GCNNNNNNNGC	2 cut(s)	433, 479
BstNI	CCWGG	4 cut(s)	30, 49, 410, 882
BstNSI	RCATGY	1 cut(s)	452
BstSCI	CCNGG	4 cut(s)	28, 47, 408, 880
BstSFI	CTRYAG	5 cut(s)	157, 474, 483, 512, 895
BstV1I	GCAGC	6 cut(s)	439, 460, 526, 529, 881, 909
BsuRI	GGCC	1 cut(s)	949
BtgI	CCRYGG	1 cut(s)	818
BtsCI	GGATG	2 cut(s)	84, 608
BveI	ACCTGC	2 cut(s)	122, 519
Cac8I	GCNNGC	4 cut(s)	110, 114, 129, 892
CaiI	CAGNNNCTG	2 cut(s)	482, 719
Cfr13I	GGNCC	3 cut(s)	44, 412, 948
Csp6I	GTAC	8 cut(s)	82, 527, 620, 705, 716, 832, 864, 930
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	5 cut(s)	101, 449, 467, 614, 819
CviQI	GTAC	8 cut(s)	82, 527, 620, 705, 716, 832, 864, 930
DdeI	CTNAG	1 cut(s)	489
DpnI	GATC	5 cut(s)	66, 311, 350, 366, 444
DpnII	GATC	5 cut(s)	64, 309, 348, 364, 442
DraI	TTTAAA	1 cut(s)	603
DrdI	GACNNNNNNGTC	1 cut(s)	692
DseDI	GACNNNNNNGTC	1 cut(s)	692
Eam1104I	CTCTTC	4 cut(s)	54, 123, 401, 841
EarI	CTCTTC	4 cut(s)	54, 123, 401, 841
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	2 cut(s)	666, 818
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	140
Eco47I	GGWCC	2 cut(s)	44, 412
Eco53kI	GAGCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	812
Eco88I	CYCGRG	2 cut(s)	550, 950
EcoICRI	GAGCTC	1 cut(s)	116
EcoO109I	RGGNCCY	2 cut(s)	44, 412
EcoRII	CCWGG	4 cut(s)	28, 47, 408, 880
EcoT14I	CCWWGG	2 cut(s)	666, 818
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	2 cut(s)	666, 818
FaeI	CATG	5 cut(s)	104, 452, 470, 617, 822
FalI	AAGNNNNNCTT	2 cut(s)	916, 948
FatI	CATG	5 cut(s)	100, 448, 466, 613, 818
Fnu4HI	GCNGC	8 cut(s)	422, 425, 453, 474, 515, 518, 895, 898
FokI	GGATG	2 cut(s)	71, 595
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	8 cut(s)	422, 425, 453, 474, 515, 518, 895, 898
FspBI	CTAG	3 cut(s)	287, 633, 906
GluI	GCNGC	8 cut(s)	422, 425, 453, 474, 515, 518, 895, 898
GsuI	CTGGAG	2 cut(s)	392, 903
HaeIII	GGCC	1 cut(s)	949
Hin1II	CATG	5 cut(s)	104, 452, 470, 617, 822
HindIII	AAGCTT	3 cut(s)	71, 125, 500
HinfI	GANTC	2 cut(s)	33, 52
Hpy188I	TCNGA	2 cut(s)	257, 369
Hpy188III	TCNNGA	9 cut(s)	37, 56, 215, 287, 313, 322, 352, 680, 962
HpyCH4III	ACNGT	2 cut(s)	98, 815
HpyCH4V	TGCA	8 cut(s)	79, 131, 278, 455, 476, 514, 713, 897
HpyF10VI	GCNNNNNNNGC	2 cut(s)	433, 479
HpyF3I	CTNAG	1 cut(s)	489
Hsp92II	CATG	5 cut(s)	104, 452, 470, 617, 822
Kzo9I	GATC	5 cut(s)	64, 309, 348, 364, 442
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	3 cut(s)	223, 574, 749
Lsp1109I	GCAGC	6 cut(s)	439, 460, 526, 529, 881, 909
LweI	GCATC	1 cut(s)	877
MaeI	CTAG	3 cut(s)	287, 633, 906
MalI	GATC	5 cut(s)	66, 311, 350, 366, 444
MboI	GATC	5 cut(s)	64, 309, 348, 364, 442
MboII	GAAGA	9 cut(s)	71, 110, 349, 388, 799, 818, 828, 927, 930
MfeI	CAATTG	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	118
MlyI	GAGTC	2 cut(s)	27, 46
MmeI	TCCRAC	3 cut(s)	112, 420, 426
MseI	TTAA	5 cut(s)	182, 545, 602, 869, 873
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	2 cut(s)	436, 894
MspCI	CTTAAG	1 cut(s)	181
MspR9I	CCNGG	4 cut(s)	30, 49, 410, 882
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	4 cut(s)	30, 49, 410, 882
MwoI	GCNNNNNNNGC	2 cut(s)	433, 479
NcoI	CCATGG	1 cut(s)	818
NdeII	GATC	5 cut(s)	64, 309, 348, 364, 442
NlaIII	CATG	5 cut(s)	104, 452, 470, 617, 822
NlaIV	GGNNCC	4 cut(s)	46, 664, 672, 745
NspI	RCATGY	1 cut(s)	452
PacI	TTAATTAA	1 cut(s)	873
PciSI	GCTCTTC	1 cut(s)	123
PfoI	TCCNGGA	2 cut(s)	408, 880
PkrI	GCNGC	8 cut(s)	423, 426, 454, 475, 516, 519, 896, 899
PleI	GAGTC	2 cut(s)	27, 46
PpsI	GAGTC	2 cut(s)	27, 46
PpuMI	RGGWCCY	2 cut(s)	44, 412
Psp124BI	GAGCTC	1 cut(s)	118
Psp5II	RGGWCCY	2 cut(s)	44, 412
Psp6I	CCWGG	4 cut(s)	28, 47, 408, 880
PspGI	CCWGG	4 cut(s)	28, 47, 408, 880
PspN4I	GGNNCC	4 cut(s)	46, 664, 672, 745
PspPI	GGNCC	3 cut(s)	44, 412, 948
PspPPI	RGGWCCY	2 cut(s)	44, 412
PstI	CTGCAG	3 cut(s)	478, 516, 899
PstNI	CAGNNNCTG	2 cut(s)	482, 719
PvuII	CAGCTG	2 cut(s)	436, 894
RsaI	GTAC	8 cut(s)	83, 528, 621, 706, 717, 833, 865, 931
RsaNI	GTAC	8 cut(s)	82, 527, 620, 705, 716, 832, 864, 930
RseI	CAYNNNNRTG	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	5 cut(s)	182, 545, 602, 869, 873
SatI	GCNGC	8 cut(s)	422, 425, 453, 474, 515, 518, 895, 898
Sau3AI	GATC	5 cut(s)	64, 309, 348, 364, 442
Sau96I	GGNCC	3 cut(s)	44, 412, 948
ScaI	AGTACT	5 cut(s)	621, 706, 833, 865, 931
SchI	GAGTC	2 cut(s)	27, 46
ScrFI	CCNGG	4 cut(s)	30, 49, 410, 882
SduI	GDGCHC	1 cut(s)	118
SfaNI	GCATC	1 cut(s)	877
SfcI	CTRYAG	5 cut(s)	157, 474, 483, 512, 895
SinI	GGWCC	2 cut(s)	44, 412
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	4 cut(s)	35, 181, 213, 962
SmoI	CTYRAG	4 cut(s)	35, 181, 213, 962
SsiI	CCGC	2 cut(s)	422, 425
SspI	AATATT	1 cut(s)	844
SspMI	CTAG	3 cut(s)	287, 633, 906
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	4 cut(s)	28, 47, 408, 880
StyI	CCWWGG	2 cut(s)	666, 818
TaaI	ACNGT	2 cut(s)	98, 815
TatI	WGTACW	7 cut(s)	81, 526, 619, 704, 831, 863, 929
TauI	GCSGC	2 cut(s)	424, 427
Tru1I	TTAA	5 cut(s)	182, 545, 602, 869, 873
Tru9I	TTAA	5 cut(s)	182, 545, 602, 869, 873
TseI	GCWGC	6 cut(s)	452, 473, 514, 517, 894, 897
TspDTI	ATGAA	3 cut(s)	39, 597, 822
TspGWI	ACGGA	2 cut(s)	306, 686
Vha464I	CTTAAG	1 cut(s)	181
VpaK11BI	GGWCC	2 cut(s)	44, 412
XapI	RAATTY	3 cut(s)	316, 604, 749
XbaI	TCTAGA	1 cut(s)	286
XceI	RCATGY	1 cut(s)	452
XspI	CTAG	3 cut(s)	287, 633, 906
ZrmI	AGTACT	5 cut(s)	621, 706, 833, 865, 931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.