RchiOBHm_Chr7g0238891
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0009034
Physical Location & Seq
Reverse (-)
64374705 .. 64375903
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21406

Sequence Viewer

Length: 909 bp
ATGGGAAAATCTCCTTGTTGTGATGAACCTGGACTCAAGAAAGGGCCCTGGACTCCCGAAGAGGATGAAAAGCTTGTGCAGTACATCCAACAACACGGTCATGGAAGCTGGCGAGCTCTTCCCAAGCTTGCAGGTCTCAACAGATGTGGCAAGAGCTGTAGGTTGAGATGGACAAATTACTTAAGACCTGATATAAAAAGAGGCCATTTTTCTCAAGAGGAGGAGCAGACCATTCTACATCTCCATTCCATCCTCGGAAACAAATGGTCAGCAATTGCAACACATCTAGACGGACGAACTGACAATGAGATCAAGAATTTCTGGAATACTCATTTGAAGAAAAAACTGATCCAGATGGGGATTGATCCGATGACCCATCAACCCAGAACTGACCTCTTCTCCAACCTCCAGGACCTTTTGCCGCTGCAATTTCAGACGTTGGATCAACTTGCTGCTACAACATTACATGATGCTGCAGAAGCTGTAGCTCAGTTGGTCAAGCTTCAATACCTGCACCAGCAATATGTACTCCAATCACATTTGTTAAACTCTAGTGTTGGCAGTTATGCTCCTCCTCCTATACAAGAAAACCTCCCAGTTTTAAATTCATCCCAACTGGTACTTGAAAATGCTAGCTCATCTTCTCAACCACTCCACTATGGAAGCTCAGTACCCCATCACAACAACCCACAAGTCCCTTTCAGTACTTTTGCAGTCCCTGAAATTGATGAAATGGGTCAATGCACGAACTTTACTTCAATGGTCAGTAGTCTCAGCCAAGCAGAGAAGAACCCACCTGAAATTTATGAATACTCCCCATACTCTTCTAATACTCCTACACCTGTGGCTGATACTTTAATTAACAATCCTGGAGATGCCAGCTGCAGCACTTCAGTAATGGAGGAATAA

Protein Analysis

302

Amino Acids

33.76

Weight (kDa)

5.84

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 3.9e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 8.9e-15 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 115 4.2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 122, 519
AciI CCGC 1 cut(s) 422
AclWI GGATC 3 cut(s) 343, 359, 450
AcsI RAATTY 3 cut(s) 316, 604, 801
AcuI CTGAAG 1 cut(s) 876
AfaI GTAC 5 cut(s) 83, 528, 621, 672, 706
AflII CTTAAG 1 cut(s) 181
AgsI TTSAA 4 cut(s) 337, 506, 626, 759
AjnI CCWGG 4 cut(s) 28, 47, 408, 868
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 2 cut(s) 140, 776
AlwI GGATC 3 cut(s) 343, 359, 450
AlwNI CAGNNNCTG 2 cut(s) 482, 719
AoxI GGCC 2 cut(s) 44, 202
ApaI GGGCCC 1 cut(s) 48
ApeKI GCWGC 5 cut(s) 424, 452, 473, 882, 885
ApoI RAATTY 3 cut(s) 316, 604, 801
AspS9I GGNCC 3 cut(s) 44, 45, 412
AsuNHI GCTAGC 1 cut(s) 632
AvaII GGWCC 1 cut(s) 412
BaeGI GKGCMC 1 cut(s) 48
BanII GRGCYC 2 cut(s) 48, 118
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 5 cut(s) 411, 439, 460, 869, 897
BccI CCATC 5 cut(s) 162, 257, 349, 384, 684
BciT130I CCWGG 4 cut(s) 30, 49, 410, 870
BcoDI GTCTC 2 cut(s) 140, 776
BfaI CTAG 3 cut(s) 287, 552, 633
BfmI CTRYAG 4 cut(s) 157, 474, 483, 883
BfrI CTTAAG 1 cut(s) 181
BfuAI ACCTGC 2 cut(s) 122, 519
BisI GCNGC 6 cut(s) 422, 425, 453, 474, 883, 886
BlsI GCNGC 6 cut(s) 423, 426, 454, 475, 884, 887
BmcAI AGTACT 1 cut(s) 706
Bme1390I CCNGG 4 cut(s) 30, 49, 410, 870
Bme18I GGWCC 1 cut(s) 412
BmgT120I GGNCC 3 cut(s) 44, 45, 412
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 4 cut(s) 30, 49, 410, 870
BmrI ACTGGG 1 cut(s) 590
BmsI GCATC 2 cut(s) 460, 865
BmtI GCTAGC 1 cut(s) 636
BmuI ACTGGG 1 cut(s) 590
BpmI CTGGAG 2 cut(s) 392, 891
BpuEI CTTGAG 2 cut(s) 20, 198
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 47, 253
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bse1I ACTGG 2 cut(s) 596, 621
BseBI CCWGG 4 cut(s) 30, 49, 410, 870
BseDI CCNNGG 2 cut(s) 47, 253
BseGI GGATG 4 cut(s) 70, 84, 249, 608
BseMII CTCAG 3 cut(s) 503, 681, 787
BseNI ACTGG 2 cut(s) 596, 621
BseRI GAGGAG 4 cut(s) 233, 236, 561, 564
BseSI GKGCMC 1 cut(s) 48
BseXI GCAGC 5 cut(s) 411, 439, 460, 869, 897
BsgI GTGCAG 2 cut(s) 98, 497
BshFI GGCC 2 cut(s) 46, 204
BsiHKAI GWGCWC 1 cut(s) 118
BslFI GGGAC 2 cut(s) 680, 701
BsmAI GTCTC 2 cut(s) 140, 776
BsmFI GGGAC 2 cut(s) 680, 701
BsnI GGCC 2 cut(s) 46, 204
Bso31I GGTCTC 1 cut(s) 140
Bsp120I GGGCCC 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 48, 118
Bsp143I GATC 4 cut(s) 309, 348, 364, 442
BspACI CCGC 1 cut(s) 422
BspANI GGCC 2 cut(s) 46, 204
BspCNI CTCAG 3 cut(s) 502, 680, 786
BspLI GGNNCC 1 cut(s) 46
BspMAI CTGCAG 2 cut(s) 478, 887
BspMI ACCTGC 2 cut(s) 122, 519
BspOI GCTAGC 1 cut(s) 636
BspPI GGATC 3 cut(s) 343, 359, 450
BspQI GCTCTTC 1 cut(s) 123
BspTI CTTAAG 1 cut(s) 181
BspTNI GGTCTC 1 cut(s) 140
BsrI ACTGG 2 cut(s) 596, 621
BssECI CCNNGG 2 cut(s) 47, 253
BssMI GATC 4 cut(s) 309, 348, 364, 442
Bst2UI CCWGG 4 cut(s) 30, 49, 410, 870
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 4 cut(s) 54, 123, 401, 829
BstAFI CTTAAG 1 cut(s) 181
BstC8I GCNNGC 5 cut(s) 110, 114, 129, 634, 880
BstDEI CTNAG 3 cut(s) 489, 667, 773
BstF5I GGATG 4 cut(s) 70, 84, 249, 608
BstKTI GATC 4 cut(s) 312, 351, 367, 445
BstMAI GTCTC 2 cut(s) 140, 776
BstMBI GATC 4 cut(s) 309, 348, 364, 442
BstMWI GCNNNNNNNGC 1 cut(s) 479
BstNI CCWGG 4 cut(s) 30, 49, 410, 870
BstSCI CCNGG 4 cut(s) 28, 47, 408, 868
BstSFI CTRYAG 4 cut(s) 157, 474, 483, 883
BstSLI GKGCMC 1 cut(s) 48
BstV1I GCAGC 5 cut(s) 411, 439, 460, 869, 897
BsuRI GGCC 2 cut(s) 46, 204
BtsCI GGATG 4 cut(s) 70, 84, 249, 608
BveI ACCTGC 2 cut(s) 122, 519
Cac8I GCNNGC 5 cut(s) 110, 114, 129, 634, 880
CaiI CAGNNNCTG 2 cut(s) 482, 719
Cfr13I GGNCC 3 cut(s) 44, 45, 412
Csp6I GTAC 5 cut(s) 82, 527, 620, 671, 705
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviAII CATG 2 cut(s) 101, 467
CviQI GTAC 5 cut(s) 82, 527, 620, 671, 705
DdeI CTNAG 3 cut(s) 489, 667, 773
DpnI GATC 4 cut(s) 311, 350, 366, 444
DpnII GATC 4 cut(s) 309, 348, 364, 442
DraI TTTAAA 1 cut(s) 603
Eam1104I CTCTTC 4 cut(s) 54, 123, 401, 829
EarI CTCTTC 4 cut(s) 54, 123, 401, 829
Ecl136II GAGCTC 1 cut(s) 116
Eco24I GRGCYC 2 cut(s) 48, 118
Eco31I GGTCTC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 412
Eco53kI GAGCTC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 876
EcoICRI GAGCTC 1 cut(s) 116
EcoO109I RGGNCCY 3 cut(s) 44, 45, 412
EcoRII CCWGG 4 cut(s) 28, 47, 408, 868
EcoT38I GRGCYC 2 cut(s) 48, 118
FaeI CATG 2 cut(s) 104, 470
FaiI YATR 9 cut(s) 102, 194, 468, 525, 567, 581, 660, 807, 820
FaqI GGGAC 2 cut(s) 680, 701
FatI CATG 2 cut(s) 100, 466
Fnu4HI GCNGC 6 cut(s) 422, 425, 453, 474, 883, 886
FokI GGATG 4 cut(s) 71, 77, 236, 595
FriOI GRGCYC 2 cut(s) 48, 118
Fsp4HI GCNGC 6 cut(s) 422, 425, 453, 474, 883, 886
FspBI CTAG 3 cut(s) 287, 552, 633
GluI GCNGC 6 cut(s) 422, 425, 453, 474, 883, 886
GsuI CTGGAG 2 cut(s) 392, 891
HaeIII GGCC 2 cut(s) 46, 204
Hin1II CATG 2 cut(s) 104, 470
HindIII AAGCTT 3 cut(s) 71, 125, 500
HinfI GANTC 2 cut(s) 33, 52
Hpy188I TCNGA 3 cut(s) 257, 369, 435
Hpy188III TCNNGA 7 cut(s) 37, 56, 215, 287, 313, 322, 352
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 437
HpyCH4V TGCA 9 cut(s) 79, 131, 278, 427, 476, 514, 713, 744, 885
HpyF10VI GCNNNNNNNGC 1 cut(s) 479
HpyF3I CTNAG 3 cut(s) 489, 667, 773
HpySE526I ACGT 1 cut(s) 437
Hsp92II CATG 2 cut(s) 104, 470
Kzo9I GATC 4 cut(s) 309, 348, 364, 442
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 2 cut(s) 223, 574
Lsp1109I GCAGC 5 cut(s) 411, 439, 460, 869, 897
LweI GCATC 2 cut(s) 460, 865
MaeI CTAG 3 cut(s) 287, 552, 633
MaeII ACGT 1 cut(s) 437
MalI GATC 4 cut(s) 311, 350, 366, 444
MboI GATC 4 cut(s) 309, 348, 364, 442
MboII GAAGA 7 cut(s) 71, 110, 349, 388, 633, 799, 816
MfeI CAATTG 1 cut(s) 273
MhlI GDGCHC 2 cut(s) 48, 118
MluCI AATT 8 cut(s) 175, 273, 316, 428, 604, 723, 801, 858
MlyI GAGTC 2 cut(s) 27, 46
MmeI TCCRAC 3 cut(s) 112, 420, 426
MseI TTAA 5 cut(s) 182, 545, 602, 857, 861
MslI CAYNNNNRTG 1 cut(s) 99
MspA1I CMGCKG 2 cut(s) 424, 882
MspCI CTTAAG 1 cut(s) 181
MspR9I CCNGG 4 cut(s) 30, 49, 410, 870
MunI CAATTG 1 cut(s) 273
MvaI CCWGG 4 cut(s) 30, 49, 410, 870
MwoI GCNNNNNNNGC 1 cut(s) 479
NdeII GATC 4 cut(s) 309, 348, 364, 442
NheI GCTAGC 1 cut(s) 632
NlaIII CATG 2 cut(s) 104, 470
NlaIV GGNNCC 1 cut(s) 46
PacI TTAATTAA 1 cut(s) 861
PciSI GCTCTTC 1 cut(s) 123
PfoI TCCNGGA 2 cut(s) 408, 868
PkrI GCNGC 6 cut(s) 423, 426, 454, 475, 884, 887
PleI GAGTC 2 cut(s) 27, 46
PpsI GAGTC 2 cut(s) 27, 46
PpuMI RGGWCCY 1 cut(s) 412
Psp124BI GAGCTC 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 412
Psp6I CCWGG 4 cut(s) 28, 47, 408, 868
PspGI CCWGG 4 cut(s) 28, 47, 408, 868
PspN4I GGNNCC 1 cut(s) 46
PspOMI GGGCCC 1 cut(s) 44
PspPI GGNCC 3 cut(s) 44, 45, 412
PspPPI RGGWCCY 1 cut(s) 412
PstI CTGCAG 2 cut(s) 478, 887
PstNI CAGNNNCTG 2 cut(s) 482, 719
PvuII CAGCTG 1 cut(s) 882
RsaI GTAC 5 cut(s) 83, 528, 621, 672, 706
RsaNI GTAC 5 cut(s) 82, 527, 620, 671, 705
RseI CAYNNNNRTG 1 cut(s) 99
SacI GAGCTC 1 cut(s) 118
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 5 cut(s) 182, 545, 602, 857, 861
SatI GCNGC 6 cut(s) 422, 425, 453, 474, 883, 886
Sau3AI GATC 4 cut(s) 309, 348, 364, 442
Sau96I GGNCC 3 cut(s) 44, 45, 412
ScaI AGTACT 1 cut(s) 706
SchI GAGTC 2 cut(s) 27, 46
ScrFI CCNGG 4 cut(s) 30, 49, 410, 870
SduI GDGCHC 2 cut(s) 48, 118
SfaNI GCATC 2 cut(s) 460, 865
SfcI CTRYAG 4 cut(s) 157, 474, 483, 883
SinI GGWCC 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 3 cut(s) 35, 181, 213
SmoI CTYRAG 3 cut(s) 35, 181, 213
Sse9I AATT 8 cut(s) 175, 273, 316, 428, 604, 723, 801, 858
SsiI CCGC 1 cut(s) 422
SspMI CTAG 3 cut(s) 287, 552, 633
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 4 cut(s) 28, 47, 408, 868
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 440
TasI AATT 8 cut(s) 175, 273, 316, 428, 604, 723, 801, 858
TatI WGTACW 3 cut(s) 81, 526, 704
TauI GCSGC 1 cut(s) 424
Tru1I TTAA 5 cut(s) 182, 545, 602, 857, 861
Tru9I TTAA 5 cut(s) 182, 545, 602, 857, 861
TseI GCWGC 5 cut(s) 424, 452, 473, 882, 885
TspDTI ATGAA 5 cut(s) 39, 81, 597, 744, 822
TspGWI ACGGA 1 cut(s) 306
Vha464I CTTAAG 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 412
XapI RAATTY 3 cut(s) 316, 604, 801
XbaI TCTAGA 1 cut(s) 286
XspI CTAG 3 cut(s) 287, 552, 633
ZrmI AGTACT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.