Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009034

Physical Location & Seq

Genomic Coordinates Reverse (-)

27432943 .. 27435275

Gene Structure 2333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g37310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGAAAATCTCATTGTTGTGATGAGTCTGGACTCAAGAAAGGACCATGGACTCCCGAAGAGGATCAAAAACTTGTGCAGTACATCCAAGAACACGGCCATGGAAGCTGGCGAGCTCTCCCCAAGCTTGCAGGTCTCAACAGATGTGGCAAAAGCTGTAGGTTAAGATGGACAAATTACTTGAGACCTGATATCAAACGAGGCAATTTTTCTCAAGAGGAGGAGCAGACCATTCTACATCTACATTCTCTCCTCGGAAACAAATGGTCAGCGATTGCAACACATCTAAGCGGACGAACTGACAATGAGATCAAGAATTTCTGGAACACTCATTTGAAGAAAAAACTGATCCAGATGGGGATTGATCCGATGACTCATCAACCCAGAACCGACCTCTTCTCCAATCTCCAGGACCTTTTGCCGCTGCAATATCAGTCGTTGGATCAACATGGTGCTACTTCATTACATGATGCTGCAGAGGCTGTGGCTCAGTTGGTTAAGCTTCAATACCTGCACCAGCAATATGTGCTCCAATCACATTTGTTAAACACTAATGTTGGTAGTTATGATCCTCCTCCTCCTATAAAAGAAAACCTCCCAGTTTTAAATTCATCCCATTTAGTAATCGAAAGTCCAAGCTCATTTTCTCAACCACTCCATTATGGAACCTTAGTACCTCATCACGAAAACCCACAAGTCCCTTTCAGTAGCTTTGCAGTCTCTGAAATTGATCCAATGGTCAGTAGTCTCAGCCAAGCAGAGGAGAAGAACCCACCTGAAATGTATGAATACTCTCCATCGTTTCTTCAGTACTCTTCTAATATTCCTACACCTTTGGCTGATCCTCTAATTAACAATCCTGGAGAAGCGAGCTGCAGCACTTCCAGTAATGGAGGAATAAGAAGTACTACTTCTTCTTCCTACTGGTCCGAGCTTCTTATCGAGGAAACCAAAACCAATTATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048580 GO:0048581 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901332 GO:1901363 GO:1901700 GO:1903506 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

323

Amino Acids

36.21

Weight (kDa)

5.95

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	6.4e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	3.9e-15	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.8e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 115	9.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34670
fragaria_vesca	FvH4_5g37310
malus_domestica	MD08G1183100.v1.1 MD15G1369700.v1.1
prunus_persica	Prupe.1G517400_v2.0.a1
pyrus_communis	pycom08g15690 pycom15g33080
rosa_chinensis	RchiOBHm_Chr7g0238891 RchiOBHm_Chr7g0238951
rosa_laevigata	RLG00000000795
rosa_multiflora	Rmu_sc0004132.1_g000011
rosa_roxburghii	Rroxscaffold_3G00221470
rosa_rugosa	Rorug07G0323900 Rorug07G0324100
rosa_samantha	Rh7AG478600 Rh7AG478900 Rh7BG451000 Rh7BG451400 Rh7CG496100 Rh7DG463600
rosa_wichuraiana	Rw7G039950 Rw7G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	122, 519
AciI	CCGC	2 cut(s)	291, 422
AclWI	GGATC	7 cut(s)	72, 343, 359, 450, 563, 725, 836
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	316, 607
AcuI	CTGAAG	1 cut(s)	791
AfaI	GTAC	4 cut(s)	83, 675, 812, 907
AfiI	CCNNNNNNNGG	1 cut(s)	760
AgsI	TTSAA	2 cut(s)	337, 506
AjnI	CCWGG	2 cut(s)	408, 859
AjuI	GAANNNNNNNTTGG	2 cut(s)	628, 660
AluBI	AGCT	9 cut(s)	108, 116, 127, 156, 502, 639, 711, 873, 934
AluI	AGCT	9 cut(s)	108, 116, 127, 156, 502, 639, 711, 873, 934
Alw21I	GWGCWC	2 cut(s)	118, 531
Alw26I	GTCTC	4 cut(s)	140, 178, 724, 752
AlwI	GGATC	7 cut(s)	72, 343, 359, 450, 563, 725, 836
AlwNI	CAGNNNCTG	2 cut(s)	482, 722
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	4 cut(s)	424, 473, 873, 876
ApoI	RAATTY	2 cut(s)	316, 607
AspS9I	GGNCC	3 cut(s)	44, 412, 927
AvaII	GGWCC	3 cut(s)	44, 412, 927
BaeI	ACNNNNGTAYC	2 cut(s)	657, 690
BanII	GRGCYC	1 cut(s)	118
BarI	GAAGNNNNNNTAC	2 cut(s)	898, 930
Bbv12I	GWGCWC	2 cut(s)	118, 531
BbvI	GCAGC	4 cut(s)	411, 460, 860, 888
BccI	CCATC	3 cut(s)	162, 349, 805
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	2 cut(s)	410, 861
BcoDI	GTCTC	4 cut(s)	140, 178, 724, 752
BfmI	CTRYAG	3 cut(s)	157, 474, 874
BfuAI	ACCTGC	2 cut(s)	122, 519
BisI	GCNGC	5 cut(s)	422, 425, 474, 874, 877
BlsI	GCNGC	5 cut(s)	423, 426, 475, 875, 878
BmcAI	AGTACT	2 cut(s)	812, 907
Bme1390I	CCNGG	2 cut(s)	410, 861
Bme18I	GGWCC	3 cut(s)	44, 412, 927
BmgT120I	GGNCC	3 cut(s)	44, 412, 927
BmiI	GGNNCC	1 cut(s)	667
BmrFI	CCNGG	2 cut(s)	410, 861
BmrI	ACTGGG	1 cut(s)	593
BmsI	GCATC	1 cut(s)	460
BmuI	ACTGGG	1 cut(s)	593
BpmI	CTGGAG	2 cut(s)	392, 882
BpuEI	CTTGAG	3 cut(s)	20, 198, 202
BsaI	GGTCTC	2 cut(s)	140, 178
BsaJI	CCNNGG	3 cut(s)	47, 100, 253
BsaXI	ACNNNNNCTCC	4 cut(s)	234, 264, 383, 413
Bsc4I	CCNNNNNNNGG	1 cut(s)	760
Bse1I	ACTGG	3 cut(s)	599, 885, 929
BseBI	CCWGG	2 cut(s)	410, 861
BseDI	CCNNGG	3 cut(s)	47, 100, 253
BseGI	GGATG	2 cut(s)	84, 611
BseLI	CCNNNNNNNGG	1 cut(s)	760
BseMII	CTCAG	2 cut(s)	503, 763
BseNI	ACTGG	3 cut(s)	599, 885, 929
BseRI	GAGGAG	6 cut(s)	233, 236, 242, 564, 567, 776
BseXI	GCAGC	4 cut(s)	411, 460, 860, 888
BsgI	GTGCAG	2 cut(s)	98, 497
BshFI	GGCC	1 cut(s)	99
BsiHKAI	GWGCWC	2 cut(s)	118, 531
BslFI	GGGAC	1 cut(s)	683
BslI	CCNNNNNNNGG	1 cut(s)	760
BsmAI	GTCTC	4 cut(s)	140, 178, 724, 752
BsmFI	GGGAC	1 cut(s)	683
BsnI	GGCC	1 cut(s)	99
Bso31I	GGTCTC	2 cut(s)	140, 178
Bsp1286I	GDGCHC	2 cut(s)	118, 531
Bsp143I	GATC	8 cut(s)	64, 309, 348, 364, 442, 568, 730, 841
Bsp19I	CCATGG	2 cut(s)	47, 100
BspACI	CCGC	2 cut(s)	291, 422
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	2 cut(s)	502, 762
BspLI	GGNNCC	1 cut(s)	667
BspMAI	CTGCAG	2 cut(s)	478, 878
BspMI	ACCTGC	2 cut(s)	122, 519
BspPI	GGATC	7 cut(s)	72, 343, 359, 450, 563, 725, 836
BspTNI	GGTCTC	2 cut(s)	140, 178
BsrI	ACTGG	3 cut(s)	599, 885, 929
BssECI	CCNNGG	3 cut(s)	47, 100, 253
BssMI	GATC	8 cut(s)	64, 309, 348, 364, 442, 568, 730, 841
BssT1I	CCWWGG	2 cut(s)	47, 100
Bst2UI	CCWGG	2 cut(s)	410, 861
Bst6I	CTCTTC	3 cut(s)	54, 401, 820
BstAPI	GCANNNNNTGC	1 cut(s)	526
BstC8I	GCNNGC	4 cut(s)	110, 114, 129, 871
BstDEI	CTNAG	4 cut(s)	287, 489, 670, 749
BstDSI	CCRYGG	2 cut(s)	47, 100
BstF5I	GGATG	2 cut(s)	84, 611
BstKTI	GATC	8 cut(s)	67, 312, 351, 367, 445, 571, 733, 844
BstMAI	GTCTC	4 cut(s)	140, 178, 724, 752
BstMBI	GATC	8 cut(s)	64, 309, 348, 364, 442, 568, 730, 841
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 479, 526
BstNI	CCWGG	2 cut(s)	410, 861
BstSCI	CCNGG	2 cut(s)	408, 859
BstSFI	CTRYAG	3 cut(s)	157, 474, 874
BstV1I	GCAGC	4 cut(s)	411, 460, 860, 888
BsuRI	GGCC	1 cut(s)	99
BtgI	CCRYGG	2 cut(s)	47, 100
BtsCI	GGATG	2 cut(s)	84, 611
BveI	ACCTGC	2 cut(s)	122, 519
Cac8I	GCNNGC	4 cut(s)	110, 114, 129, 871
CaiI	CAGNNNCTG	2 cut(s)	482, 722
Cfr13I	GGNCC	3 cut(s)	44, 412, 927
Csp6I	GTAC	4 cut(s)	82, 674, 811, 906
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	4 cut(s)	48, 101, 449, 467
CviQI	GTAC	4 cut(s)	82, 674, 811, 906
DdeI	CTNAG	4 cut(s)	287, 489, 670, 749
DpnI	GATC	8 cut(s)	66, 311, 350, 366, 444, 570, 732, 843
DpnII	GATC	8 cut(s)	64, 309, 348, 364, 442, 568, 730, 841
DraI	TTTAAA	1 cut(s)	606
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	3 cut(s)	54, 401, 820
EarI	CTCTTC	3 cut(s)	54, 401, 820
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	2 cut(s)	47, 100
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	2 cut(s)	140, 178
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	3 cut(s)	44, 412, 927
Eco53kI	GAGCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	791
EcoICRI	GAGCTC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	412
EcoRII	CCWGG	2 cut(s)	408, 859
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	47, 100
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	2 cut(s)	47, 100
FaeI	CATG	4 cut(s)	51, 104, 452, 470
FalI	AAGNNNNNCTT	2 cut(s)	895, 927
FaqI	GGGAC	1 cut(s)	683
FatI	CATG	4 cut(s)	47, 100, 448, 466
Fnu4HI	GCNGC	5 cut(s)	422, 425, 474, 874, 877
FokI	GGATG	2 cut(s)	71, 598
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	5 cut(s)	422, 425, 474, 874, 877
GluI	GCNGC	5 cut(s)	422, 425, 474, 874, 877
GsuI	CTGGAG	2 cut(s)	392, 882
HaeIII	GGCC	1 cut(s)	99
Hin1II	CATG	4 cut(s)	51, 104, 452, 470
HindIII	AAGCTT	2 cut(s)	125, 500
HinfI	GANTC	4 cut(s)	26, 33, 52, 373
Hpy188I	TCNGA	4 cut(s)	257, 369, 724, 931
Hpy188III	TCNNGA	8 cut(s)	30, 37, 56, 215, 313, 322, 352, 683
HpyCH4V	TGCA	8 cut(s)	79, 131, 278, 427, 476, 514, 716, 876
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 479, 526
HpyF3I	CTNAG	4 cut(s)	287, 489, 670, 749
Hsp92II	CATG	4 cut(s)	51, 104, 452, 470
Kzo9I	GATC	8 cut(s)	64, 309, 348, 364, 442, 568, 730, 841
LmnI	GCTCC	2 cut(s)	223, 534
Lsp1109I	GCAGC	4 cut(s)	411, 460, 860, 888
LweI	GCATC	1 cut(s)	460
MalI	GATC	8 cut(s)	66, 311, 350, 366, 444, 570, 732, 843
MboI	GATC	8 cut(s)	64, 309, 348, 364, 442, 568, 730, 841
MboII	GAAGA	8 cut(s)	71, 349, 388, 778, 797, 807, 906, 909
MhlI	GDGCHC	2 cut(s)	118, 531
MluCI	AATT	7 cut(s)	175, 205, 316, 607, 726, 849, 958
MlyI	GAGTC	4 cut(s)	27, 35, 46, 367
MmeI	TCCRAC	1 cut(s)	420
MseI	TTAA	5 cut(s)	164, 498, 545, 605, 852
MslI	CAYNNNNRTG	2 cut(s)	18, 99
MspA1I	CMGCKG	1 cut(s)	424
MspR9I	CCNGG	2 cut(s)	410, 861
MvaI	CCWGG	2 cut(s)	410, 861
MwoI	GCNNNNNNNGC	3 cut(s)	105, 479, 526
NcoI	CCATGG	2 cut(s)	47, 100
NdeII	GATC	8 cut(s)	64, 309, 348, 364, 442, 568, 730, 841
NlaIII	CATG	4 cut(s)	51, 104, 452, 470
NlaIV	GGNNCC	1 cut(s)	667
PfoI	TCCNGGA	2 cut(s)	408, 859
PkrI	GCNGC	5 cut(s)	423, 426, 475, 875, 878
PleI	GAGTC	4 cut(s)	27, 34, 46, 367
PpsI	GAGTC	4 cut(s)	27, 34, 46, 367
PpuMI	RGGWCCY	1 cut(s)	412
Psp124BI	GAGCTC	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	412
Psp6I	CCWGG	2 cut(s)	408, 859
PspGI	CCWGG	2 cut(s)	408, 859
PspN4I	GGNNCC	1 cut(s)	667
PspPI	GGNCC	3 cut(s)	44, 412, 927
PspPPI	RGGWCCY	1 cut(s)	412
PstI	CTGCAG	2 cut(s)	478, 878
PstNI	CAGNNNCTG	2 cut(s)	482, 722
RsaI	GTAC	4 cut(s)	83, 675, 812, 907
RsaNI	GTAC	4 cut(s)	82, 674, 811, 906
RseI	CAYNNNNRTG	2 cut(s)	18, 99
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	5 cut(s)	164, 498, 545, 605, 852
SatI	GCNGC	5 cut(s)	422, 425, 474, 874, 877
Sau3AI	GATC	8 cut(s)	64, 309, 348, 364, 442, 568, 730, 841
Sau96I	GGNCC	3 cut(s)	44, 412, 927
ScaI	AGTACT	2 cut(s)	812, 907
SchI	GAGTC	4 cut(s)	27, 35, 46, 367
ScrFI	CCNGG	2 cut(s)	410, 861
SduI	GDGCHC	2 cut(s)	118, 531
SfaNI	GCATC	1 cut(s)	460
SfcI	CTRYAG	3 cut(s)	157, 474, 874
SinI	GGWCC	3 cut(s)	44, 412, 927
SmiMI	CAYNNNNRTG	2 cut(s)	18, 99
SmlI	CTYRAG	3 cut(s)	35, 181, 213
SmoI	CTYRAG	3 cut(s)	35, 181, 213
Sse9I	AATT	7 cut(s)	175, 205, 316, 607, 726, 849, 958
SsiI	CCGC	2 cut(s)	291, 422
SspI	AATATT	1 cut(s)	823
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	2 cut(s)	408, 859
StyI	CCWWGG	2 cut(s)	47, 100
TaqI	TCGA	2 cut(s)	627, 942
TasI	AATT	7 cut(s)	175, 205, 316, 607, 726, 849, 958
TatI	WGTACW	3 cut(s)	81, 810, 905
TauI	GCSGC	1 cut(s)	424
Tru1I	TTAA	5 cut(s)	164, 498, 545, 605, 852
Tru9I	TTAA	5 cut(s)	164, 498, 545, 605, 852
TseI	GCWGC	4 cut(s)	424, 473, 873, 876
TspDTI	ATGAA	3 cut(s)	450, 600, 801
VpaK11BI	GGWCC	3 cut(s)	44, 412, 927
XapI	RAATTY	2 cut(s)	316, 607
ZrmI	AGTACT	2 cut(s)	812, 907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.