MD15G1369700.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
44944222 .. 44945662
1441 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1369700.v1.1.491

Sequence Viewer

Length: 1062 bp
ATGGGGAGATCTCCCTGTTGTGATGAAAGTGGTCTCAAGAAAGGACCCTGGACTCCTGAAGAGGATCAAAAGCTTGTACAATACATTGAACAACATGGCCATGGAAGTTGGAGAGCTCTTCCAAAGCTTGCAGGTCTCAATAGATGTGGGAAGAGTTGCAGGCTAAGATGGACAAACTACTTAAGACCCGATATCAAAAGAGGCAAATTTTCTGAAGAAGAGGAGCAAACAATTCTACATCTCCATTCTATCCTTGGAAACAAATGGTCAACAATTGCAACACACTTAGACGGCCGAACGGACAATGAAATCAAGAACTTCTGGAACACACATTTGAAGAAAAAGCTGATCCAGATGGGTTTTGATCCAATGACCCATCAGCCAAGAACTGACCTATTTTCCAACTTGTCTCAGCTTTTAGCCCTAGCTAACCTGCAGGATCTCATGCAGCAATATCAGCCATTAGATCACATTAATCAACATGATGCAACATTACACGCAGATCAAGCCGTTCAATTGACCAAGCTTCAATACATTGAGCATTTACTCCAATCCGTAGCTTATACAAGCAACAATGACACTTATACCCAGAACAGAAGCACAGAGATGGAAATGGATGATCAGGCTTTTAATTTGTTAAGCTCGATTAATATTCCTCCTAGCAAAGAAACCCCGAATTTTAATTCACTACAACTGGAAAATCCAAGCTCATTTTCTCATGGATATGGTGGTAATTCTTCTCAACCACTCCACCATCTTCAATCCCTACTGCCTCATGACCTAGCAGACCCACAAGTCGCTTTCAGTTCTCTACCATCTTTGAATAACAGTAACCATGAAGTGGGCCAGGGCTCCAACTTTACAGTGGTCCGTGGTCAAGAAAAGAACCCATCCGATGAATCTTCATGGTTTAATAATCTTGTATCTCCTACCGCTTCTATTCCTCCAACCAGCAATGTTCCCGGAGATGCGTACTGCAGCAGGTCAAGCTATGGAGGAAGAAGTAGTGATTCTTCATCCTACTGGCCTGACCTTTTTCTTGAGGACGCCAATTATGGTTGA

Protein Analysis

354

Amino Acids

39.75

Weight (kDa)

5.78

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 6e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 3.9e-15 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 6.6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 116 7.8e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 794
Acc36I ACCTGC 3 cut(s) 122, 441, 972
AccB7I CCANNNNNTGG 1 cut(s) 841
AciI CCGC 1 cut(s) 933
AclWI GGATC 4 cut(s) 72, 343, 359, 447
AcoI YGGCCR 2 cut(s) 97, 292
AcsI RAATTY 2 cut(s) 206, 676
AcuI CTGAAG 2 cut(s) 78, 234
AcyI GRCGYC 1 cut(s) 1047
AfaI GTAC 2 cut(s) 78, 974
AfiI CCNNNNNNNGG 1 cut(s) 841
AflII CTTAAG 1 cut(s) 181
AgsI TTSAA 6 cut(s) 89, 337, 515, 530, 761, 823
AjnI CCWGG 2 cut(s) 47, 846
AjuI GAANNNNNNNTTGG 2 cut(s) 697, 729
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 3 cut(s) 38, 140, 414
AlwI GGATC 4 cut(s) 72, 343, 359, 447
AoxI GGCC 4 cut(s) 97, 292, 844, 1025
ApeKI GCWGC 2 cut(s) 448, 978
ApoI RAATTY 2 cut(s) 206, 676
AseI ATTAAT 2 cut(s) 474, 648
AspS9I GGNCC 3 cut(s) 44, 844, 868
AsuC2I CCSGG 1 cut(s) 963
AvaII GGWCC 2 cut(s) 44, 868
BalI TGGCCA 1 cut(s) 99
BanII GRGCYC 2 cut(s) 118, 854
BarI GAAGNNNNNNTAC 2 cut(s) 997, 1029
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 2 cut(s) 460, 990
BccI CCATC 7 cut(s) 162, 349, 384, 601, 762, 823, 898
BceAI ACGGC 2 cut(s) 307, 494
BciT130I CCWGG 2 cut(s) 49, 848
BclI TGATCA 1 cut(s) 619
BcnI CCSGG 1 cut(s) 963
BcoDI GTCTC 3 cut(s) 38, 140, 414
BfaI CTAG 3 cut(s) 425, 660, 782
BfmI CTRYAG 2 cut(s) 434, 976
BfrI CTTAAG 1 cut(s) 181
BfuAI ACCTGC 3 cut(s) 122, 441, 972
BglII AGATCT 1 cut(s) 8
BisI GCNGC 2 cut(s) 449, 979
BlsI GCNGC 2 cut(s) 450, 980
Bme1390I CCNGG 3 cut(s) 49, 848, 963
Bme18I GGWCC 2 cut(s) 44, 868
BmgT120I GGNCC 3 cut(s) 44, 844, 868
BmiI GGNNCC 2 cut(s) 46, 853
BmrFI CCNGG 3 cut(s) 49, 848, 963
BmsI GCATC 2 cut(s) 475, 958
BpuEI CTTGAG 2 cut(s) 20, 1061
BpuMI CCSGG 1 cut(s) 963
BsaHI GRCGYC 1 cut(s) 1047
BsaI GGTCTC 2 cut(s) 38, 140
BsaJI CCNNGG 5 cut(s) 47, 100, 253, 847, 871
Bsc4I CCNNNNNNNGG 1 cut(s) 841
Bse1I ACTGG 2 cut(s) 699, 1028
Bse3DI GCAATG 1 cut(s) 961
BseBI CCWGG 2 cut(s) 49, 848
BseDI CCNNGG 5 cut(s) 47, 100, 253, 847, 871
BseGI GGATG 3 cut(s) 622, 890, 1016
BseLI CCNNNNNNNGG 1 cut(s) 841
BseMI GCAATG 1 cut(s) 961
BseMII CTCAG 1 cut(s) 425
BseNI ACTGG 2 cut(s) 699, 1028
BseRI GAGGAG 1 cut(s) 236
BseX3I CGGCCG 1 cut(s) 292
BseXI GCAGC 2 cut(s) 460, 990
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 4 cut(s) 99, 294, 846, 1027
BsiEI CGRYCG 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 118
BsiSI CCGG 1 cut(s) 963
BslI CCNNNNNNNGG 1 cut(s) 841
BsmAI GTCTC 3 cut(s) 38, 140, 414
BsnI GGCC 4 cut(s) 99, 294, 846, 1027
Bso31I GGTCTC 2 cut(s) 38, 140
Bsp1286I GDGCHC 2 cut(s) 118, 854
Bsp1407I TGTACA 1 cut(s) 76
Bsp143I GATC 8 cut(s) 8, 64, 348, 364, 439, 466, 502, 619
Bsp19I CCATGG 1 cut(s) 100
BspACI CCGC 1 cut(s) 933
BspANI GGCC 4 cut(s) 99, 294, 846, 1027
BspCNI CTCAG 1 cut(s) 424
BspHI TCATGA 1 cut(s) 775
BspLI GGNNCC 2 cut(s) 46, 853
BspMAI CTGCAG 2 cut(s) 438, 980
BspMI ACCTGC 3 cut(s) 122, 441, 972
BspPI GGATC 4 cut(s) 72, 343, 359, 447
BspQI GCTCTTC 1 cut(s) 123
BspTI CTTAAG 1 cut(s) 181
BspTNI GGTCTC 2 cut(s) 38, 140
BsrDI GCAATG 1 cut(s) 961
BsrGI TGTACA 1 cut(s) 76
BsrI ACTGG 2 cut(s) 699, 1028
BssECI CCNNGG 5 cut(s) 47, 100, 253, 847, 871
BssMI GATC 8 cut(s) 8, 64, 348, 364, 439, 466, 502, 619
BssNI GRCGYC 1 cut(s) 1047
BssT1I CCWWGG 2 cut(s) 100, 253
Bst2UI CCWGG 2 cut(s) 49, 848
Bst4CI ACNGT 2 cut(s) 830, 865
Bst6I CTCTTC 4 cut(s) 54, 123, 146, 213
BstACI GRCGYC 1 cut(s) 1047
BstAFI CTTAAG 1 cut(s) 181
BstAUI TGTACA 1 cut(s) 76
BstC8I GCNNGC 2 cut(s) 129, 161
BstDEI CTNAG 3 cut(s) 164, 286, 411
BstDSI CCRYGG 2 cut(s) 100, 871
BstF5I GGATG 3 cut(s) 622, 890, 1016
BstKTI GATC 8 cut(s) 11, 67, 351, 367, 442, 469, 505, 622
BstMAI GTCTC 3 cut(s) 38, 140, 414
BstMBI GATC 8 cut(s) 8, 64, 348, 364, 439, 466, 502, 619
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 3 cut(s) 457, 506, 987
BstNI CCWGG 2 cut(s) 49, 848
BstSCI CCNGG 3 cut(s) 47, 846, 961
BstSFI CTRYAG 2 cut(s) 434, 976
BstV1I GCAGC 2 cut(s) 460, 990
BstX2I RGATCY 2 cut(s) 8, 439
BstYI RGATCY 2 cut(s) 8, 439
BstZI CGGCCG 1 cut(s) 292
BsuRI GGCC 4 cut(s) 99, 294, 846, 1027
BtgI CCRYGG 2 cut(s) 100, 871
BtsCI GGATG 3 cut(s) 622, 890, 1016
BtsIMutI CAGTG 1 cut(s) 870
BveI ACCTGC 3 cut(s) 122, 441, 972
Cac8I GCNNGC 2 cut(s) 129, 161
CciI TCATGA 1 cut(s) 775
Cfr13I GGNCC 3 cut(s) 44, 844, 868
CseI GACGC 1 cut(s) 1055
Csp6I GTAC 2 cut(s) 77, 973
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviAII CATG 8 cut(s) 95, 101, 445, 482, 719, 776, 836, 906
CviQI GTAC 2 cut(s) 77, 973
DdeI CTNAG 3 cut(s) 164, 286, 411
DpnI GATC 8 cut(s) 10, 66, 350, 366, 441, 468, 504, 621
DpnII GATC 8 cut(s) 8, 64, 348, 364, 439, 466, 502, 619
DrdI GACNNNNNNGTC 1 cut(s) 794
DseDI GACNNNNNNGTC 1 cut(s) 794
EaeI YGGCCR 2 cut(s) 97, 292
EagI CGGCCG 1 cut(s) 292
Eam1104I CTCTTC 4 cut(s) 54, 123, 146, 213
EarI CTCTTC 4 cut(s) 54, 123, 146, 213
Ecl136II GAGCTC 1 cut(s) 116
EclXI CGGCCG 1 cut(s) 292
Eco130I CCWWGG 2 cut(s) 100, 253
Eco24I GRGCYC 2 cut(s) 118, 854
Eco31I GGTCTC 2 cut(s) 38, 140
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 2 cut(s) 44, 868
Eco52I CGGCCG 1 cut(s) 292
Eco53kI GAGCTC 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 78, 234
EcoICRI GAGCTC 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 47, 846
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 2 cut(s) 100, 253
EcoT38I GRGCYC 2 cut(s) 118, 854
ErhI CCWWGG 2 cut(s) 100, 253
FaeI CATG 8 cut(s) 98, 104, 448, 485, 722, 779, 839, 909
FatI CATG 8 cut(s) 94, 100, 444, 481, 718, 775, 835, 905
FbaI TGATCA 1 cut(s) 619
Fnu4HI GCNGC 2 cut(s) 449, 979
FokI GGATG 3 cut(s) 629, 877, 1003
FriOI GRGCYC 2 cut(s) 118, 854
Fsp4HI GCNGC 2 cut(s) 449, 979
FspBI CTAG 3 cut(s) 425, 660, 782
GluI GCNGC 2 cut(s) 449, 979
HaeIII GGCC 4 cut(s) 99, 294, 846, 1027
HapII CCGG 1 cut(s) 963
HgaI GACGC 1 cut(s) 1055
Hin1I GRCGYC 1 cut(s) 1047
Hin1II CATG 8 cut(s) 98, 104, 448, 485, 722, 779, 839, 909
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HindIII AAGCTT 3 cut(s) 71, 125, 524
HinfI GANTC 3 cut(s) 52, 899, 1010
HpaII CCGG 1 cut(s) 963
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 2 cut(s) 214, 895
Hpy188III TCNNGA 8 cut(s) 37, 56, 313, 322, 352, 776, 878, 1040
Hpy8I GTNNAC 1 cut(s) 270
HpyCH4III ACNGT 2 cut(s) 830, 865
HpyCH4V TGCA 7 cut(s) 131, 159, 278, 436, 448, 488, 978
HpyF10VI GCNNNNNNNGC 3 cut(s) 457, 506, 987
HpyF3I CTNAG 3 cut(s) 164, 286, 411
Hsp92I GRCGYC 1 cut(s) 1047
Hsp92II CATG 8 cut(s) 98, 104, 448, 485, 722, 779, 839, 909
Ksp22I TGATCA 1 cut(s) 619
Kzo9I GATC 8 cut(s) 8, 64, 348, 364, 439, 466, 502, 619
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 2 cut(s) 223, 857
Lsp1109I GCAGC 2 cut(s) 460, 990
LweI GCATC 2 cut(s) 475, 958
MaeI CTAG 3 cut(s) 425, 660, 782
MaeIII GTNAC 1 cut(s) 830
MalI GATC 8 cut(s) 10, 66, 350, 366, 441, 468, 504, 621
MboI GATC 8 cut(s) 8, 64, 348, 364, 439, 466, 502, 619
MfeI CAATTG 2 cut(s) 273, 515
MflI RGATCY 2 cut(s) 8, 439
MhlI GDGCHC 2 cut(s) 118, 854
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 9 cut(s) 206, 231, 273, 515, 631, 676, 682, 733, 1051
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 4 cut(s) 89, 426, 879, 971
MnlI CCTC 8 cut(s) 55, 194, 214, 666, 783, 954, 989, 1036
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MseI TTAA 7 cut(s) 182, 474, 630, 638, 648, 681, 912
MslI CAYNNNNRTG 3 cut(s) 99, 605, 723
Msp20I TGGCCA 1 cut(s) 99
MspCI CTTAAG 1 cut(s) 181
MspI CCGG 1 cut(s) 963
MspR9I CCNGG 3 cut(s) 49, 848, 963
MunI CAATTG 2 cut(s) 273, 515
MvaI CCWGG 2 cut(s) 49, 848
MwoI GCNNNNNNNGC 3 cut(s) 457, 506, 987
NciI CCSGG 1 cut(s) 963
NcoI CCATGG 1 cut(s) 100
NdeII GATC 8 cut(s) 8, 64, 348, 364, 439, 466, 502, 619
NlaIII CATG 8 cut(s) 98, 104, 448, 485, 722, 779, 839, 909
NlaIV GGNNCC 2 cut(s) 46, 853
PagI TCATGA 1 cut(s) 775
PciSI GCTCTTC 1 cut(s) 123
PfeI GAWTC 2 cut(s) 899, 1010
PflMI CCANNNNNTGG 1 cut(s) 841
PfoI TCCNGGA 1 cut(s) 961
PkrI GCNGC 2 cut(s) 450, 980
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PpuMI RGGWCCY 1 cut(s) 44
PshBI ATTAAT 2 cut(s) 474, 648
Psp124BI GAGCTC 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 2 cut(s) 47, 846
PspGI CCWGG 2 cut(s) 47, 846
PspN4I GGNNCC 2 cut(s) 46, 853
PspPI GGNCC 3 cut(s) 44, 844, 868
PspPPI RGGWCCY 1 cut(s) 44
PstI CTGCAG 2 cut(s) 438, 980
PsuI RGATCY 2 cut(s) 8, 439
RsaI GTAC 2 cut(s) 78, 974
RsaNI GTAC 2 cut(s) 77, 973
RseI CAYNNNNRTG 3 cut(s) 99, 605, 723
SacI GAGCTC 1 cut(s) 118
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 7 cut(s) 182, 474, 630, 638, 648, 681, 912
SatI GCNGC 2 cut(s) 449, 979
Sau3AI GATC 8 cut(s) 8, 64, 348, 364, 439, 466, 502, 619
Sau96I GGNCC 3 cut(s) 44, 844, 868
SbfI CCTGCAGG 1 cut(s) 438
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 3 cut(s) 49, 848, 963
SdaI CCTGCAGG 1 cut(s) 438
SduI GDGCHC 2 cut(s) 118, 854
SfaNI GCATC 2 cut(s) 475, 958
SfcI CTRYAG 2 cut(s) 434, 976
SinI GGWCC 2 cut(s) 44, 868
SmiMI CAYNNNNRTG 3 cut(s) 99, 605, 723
SmlI CTYRAG 3 cut(s) 35, 181, 1040
SmoI CTYRAG 3 cut(s) 35, 181, 1040
Sse8387I CCTGCAGG 1 cut(s) 438
Sse9I AATT 9 cut(s) 206, 231, 273, 515, 631, 676, 682, 733, 1051
SsiI CCGC 1 cut(s) 933
SspI AATATT 1 cut(s) 652
SspMI CTAG 3 cut(s) 425, 660, 782
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 3 cut(s) 47, 846, 961
StyI CCWWGG 2 cut(s) 100, 253
TaaI ACNGT 2 cut(s) 830, 865
TaqI TCGA 1 cut(s) 644
TasI AATT 9 cut(s) 206, 231, 273, 515, 631, 676, 682, 733, 1051
TatI WGTACW 1 cut(s) 76
TfiI GAWTC 2 cut(s) 899, 1010
Tru1I TTAA 7 cut(s) 182, 474, 630, 638, 648, 681, 912
Tru9I TTAA 7 cut(s) 182, 474, 630, 638, 648, 681, 912
TscAI CASTG 1 cut(s) 870
TseI GCWGC 2 cut(s) 448, 978
TspDTI ATGAA 6 cut(s) 39, 321, 852, 894, 912, 1005
TspGWI ACGGA 3 cut(s) 314, 544, 860
TspRI CASTG 1 cut(s) 870
Van91I CCANNNNNTGG 1 cut(s) 841
Vha464I CTTAAG 1 cut(s) 181
VpaK11BI GGWCC 2 cut(s) 44, 868
VspI ATTAAT 2 cut(s) 474, 648
XapI RAATTY 2 cut(s) 206, 676
XcmI CCANNNNNNNNNTGG 2 cut(s) 251, 862
XspI CTAG 3 cut(s) 425, 660, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.