Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009034

Physical Location & Seq

Genomic Coordinates Forward (+)

12709090 .. 12710665

Gene Structure 1576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G34670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGGGAGGTCGCCTTGTTGCGACGAGAATGGTCTAAAGAAAGGGCCATGGACTCCTGAAGAAGATCAAAAGCTTATTGATTACATTCATAAACATGGTCATGGAAGCTGGAGAGCTCTCCCCAAGCTCGCAGATTTGAATAGGTGTGGAAAGAGTTGTAGACTGAGGTGGACAAATTATTTGAGACCAGACATCAAAAGAGGAAAGTTTTCAGCCGAAGAAGAGCAAACAATCCTCCATCTCCACTCCATTCTCGGGAATAAATGGTCAGCTATTGCGACGCATTTGCAAGGTCGTACAGATAATGAGATAAAAAACTTTTGGAACACACATCTAAAGAAGAAATTGATCCAGATGGGGATCGATCCTGTGACTCATCAGCCAAGAACCGACCTCTTCGCAAGTTTACCTCAGCTCATAGCCTTGGCAAATCTAAAAGACCTAATCGAACAAACATCACAATTCTCATCCATGCAAGGCGAAGCAGCCCAACTAGCCAATCTACAATATCTCCAACGTATGTTTAATTCTTCGGCTTCATTAACCAACAACAACGGCAACAATTTTAGCCCGAGTAGTATTCTCGATATCGATCAGCACCATGCCATGAACCTCTTAAACTCCATGGTCTCTTGGAACAAAGATCAAAACCCCGCTTTTGATCCGGTTCTTGAACTCGAGGCTAACGATCAAAATCAAGATTTATTTCCACTAGGGTTTATCATTGATCAACCCACCCAACCACTCCAACAACAAAAATACCATTTAAACAATAGTCCTAGTGAGCTACCATCGCAAGGTGACCCACTTCTTGATCATGTCCCTTTCAGTCTCCAAACACCTTTGAATAGTGAGGATCACTTTATAGATAATTTGGTCAAACATCCAACTGATCATGAGCATGAACATGATGACAATCCATCTTCATGGGTTCTCCCTTCTCTTATAGACAATAACCCTAAAACTGTCACGTCTTCTCTTCCACACAACAATCCGGCGGATGCAAGTAGCAGCTCAAGCTATGGAGGTTGTGAAGCTGCGTCGTTTTATTGGCCTGACATTTGCTTCGACGAAAGCCTCATGAACGTTATATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048580 GO:0048581 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901332 GO:1901363 GO:1901700 GO:1903506 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

365

Amino Acids

41.2

Weight (kDa)

5.49

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	6.3e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	1.2e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	2.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 115	7e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34670
fragaria_vesca	FvH4_5g37310
malus_domestica	MD08G1183100.v1.1 MD15G1369700.v1.1
prunus_persica	Prupe.1G517400_v2.0.a1
pyrus_communis	pycom08g15690 pycom15g33080
rosa_chinensis	RchiOBHm_Chr7g0238891 RchiOBHm_Chr7g0238951
rosa_laevigata	RLG00000000795
rosa_multiflora	Rmu_sc0004132.1_g000011
rosa_roxburghii	Rroxscaffold_3G00221470
rosa_rugosa	Rorug07G0323900 Rorug07G0324100
rosa_samantha	Rh7AG478600 Rh7AG478900 Rh7BG451000 Rh7BG451400 Rh7CG496100 Rh7DG463600
rosa_wichuraiana	Rw7G039950 Rw7G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	160
AciI	CCGC	2 cut(s)	654, 998
AclI	AACGTT	1 cut(s)	1086
AclWI	GGATC	5 cut(s)	343, 359, 368, 656, 864
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	2 cut(s)	255, 797
AgsI	TTSAA	3 cut(s)	139, 674, 847
AjiI	CACGTC	1 cut(s)	972
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	3 cut(s)	178, 634, 836
AlwI	GGATC	5 cut(s)	343, 359, 368, 656, 864
Ama87I	CYCGRG	3 cut(s)	254, 571, 677
AoxI	GGCC	2 cut(s)	44, 1052
ApeKI	GCWGC	3 cut(s)	485, 1011, 1037
ArsI	GACNNNNNNTTYG	4 cut(s)	163, 195, 1049, 1081
Asp700I	GAANNNNTTC	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	812
AvaI	CYCGRG	3 cut(s)	254, 571, 677
BanII	GRGCYC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	966
Bbv12I	GWGCWC	1 cut(s)	118
BbvCI	CCTCAGC	1 cut(s)	411
BbvI	GCAGC	3 cut(s)	497, 1023, 1024
BccI	CCATC	4 cut(s)	246, 349, 799, 928
BceAI	ACGGC	1 cut(s)	571
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BclI	TGATCA	3 cut(s)	727, 814, 892
BcoDI	GTCTC	3 cut(s)	178, 634, 836
BfaI	CTAG	3 cut(s)	494, 713, 780
BisI	GCNGC	3 cut(s)	486, 1012, 1038
BlsI	GCNGC	3 cut(s)	487, 1013, 1039
BmeT110I	CYCGRG	3 cut(s)	254, 571, 677
BmgBI	CACGTC	1 cut(s)	972
BmgT120I	GGNCC	1 cut(s)	44
BmsI	GCATC	1 cut(s)	991
BpiI	GAAGAC	1 cut(s)	966
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	1000
Bsa29I	ATCGAT	2 cut(s)	363, 591
BsaBI	GATNNNNATC	4 cut(s)	359, 591, 693, 915
BsaI	GGTCTC	2 cut(s)	178, 634
BsaJI	CCNNGG	3 cut(s)	47, 423, 624
BsaWI	WCCGGW	1 cut(s)	664
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 797
Bse8I	GATNNNNATC	4 cut(s)	359, 591, 693, 915
BseCI	ATCGAT	2 cut(s)	363, 591
BseDI	CCNNGG	3 cut(s)	47, 423, 624
BseGI	GGATG	3 cut(s)	467, 883, 1006
BseJI	GATNNNNATC	4 cut(s)	359, 591, 693, 915
BseLI	CCNNNNNNNGG	2 cut(s)	255, 797
BseMII	CTCAG	2 cut(s)	155, 425
BseXI	GCAGC	3 cut(s)	497, 1023, 1024
BshFI	GGCC	2 cut(s)	46, 1054
BshVI	ATCGAT	2 cut(s)	363, 591
BsiHKAI	GWGCWC	1 cut(s)	118
BsiHKCI	CYCGRG	3 cut(s)	254, 571, 677
BsiSI	CCGG	2 cut(s)	665, 995
BslFI	GGGAC	1 cut(s)	806
BslI	CCNNNNNNNGG	2 cut(s)	255, 797
BsmAI	GTCTC	3 cut(s)	178, 634, 836
BsmFI	GGGAC	1 cut(s)	806
BsnI	GGCC	2 cut(s)	46, 1054
Bso31I	GGTCTC	2 cut(s)	178, 634
BsoBI	CYCGRG	3 cut(s)	254, 571, 677
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp19I	CCATGG	2 cut(s)	47, 624
BspACI	CCGC	2 cut(s)	654, 998
BspANI	GGCC	2 cut(s)	46, 1054
BspCNI	CTCAG	2 cut(s)	156, 424
BspDI	ATCGAT	2 cut(s)	363, 591
BspHI	TCATGA	2 cut(s)	895, 1080
BspPI	GGATC	5 cut(s)	343, 359, 368, 656, 864
BspQI	GCTCTTC	1 cut(s)	216
BspTNI	GGTCTC	2 cut(s)	178, 634
BssECI	CCNNGG	3 cut(s)	47, 423, 624
BssT1I	CCWWGG	3 cut(s)	47, 423, 624
Bst4CI	ACNGT	1 cut(s)	967
Bst6I	CTCTTC	3 cut(s)	216, 401, 984
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	3 cut(s)	164, 411, 1095
BstDSI	CCRYGG	2 cut(s)	47, 624
BstEII	GGTNACC	1 cut(s)	800
BstF5I	GGATG	3 cut(s)	467, 883, 1006
BstMAI	GTCTC	3 cut(s)	178, 634, 836
BstMWI	GCNNNNNNNGC	3 cut(s)	494, 793, 1017
BstPI	GGTNACC	1 cut(s)	800
BstV1I	GCAGC	3 cut(s)	497, 1023, 1024
BstV2I	GAAGAC	1 cut(s)	966
BstXI	CCANNNNNNTGG	1 cut(s)	927
Bsu15I	ATCGAT	2 cut(s)	363, 591
BsuRI	GGCC	2 cut(s)	46, 1054
BsuTUI	ATCGAT	2 cut(s)	363, 591
BtgI	CCRYGG	2 cut(s)	47, 624
BtgZI	GCGATG	1 cut(s)	777
BtrI	CACGTC	1 cut(s)	972
BtsCI	GGATG	3 cut(s)	467, 883, 1006
Cac8I	GCNNGC	1 cut(s)	129
CciI	TCATGA	2 cut(s)	895, 1080
Cfr13I	GGNCC	1 cut(s)	44
ClaI	ATCGAT	2 cut(s)	363, 591
CseI	GACGC	2 cut(s)	289, 1029
Csp6I	GTAC	1 cut(s)	297
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	3 cut(s)	164, 411, 1095
DraI	TTTAAA	1 cut(s)	768
Eam1104I	CTCTTC	3 cut(s)	216, 401, 984
EarI	CTCTTC	3 cut(s)	216, 401, 984
EciI	GGCGGA	1 cut(s)	1013
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	3 cut(s)	47, 423, 624
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	2 cut(s)	178, 634
Eco32I	GATATC	1 cut(s)	589
Eco53kI	GAGCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	78
Eco88I	CYCGRG	3 cut(s)	254, 571, 677
Eco91I	GGTNACC	1 cut(s)	800
EcoICRI	GAGCTC	1 cut(s)	116
EcoO65I	GGTNACC	1 cut(s)	800
EcoRV	GATATC	1 cut(s)	589
EcoT14I	CCWWGG	3 cut(s)	47, 423, 624
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	3 cut(s)	47, 423, 624
FaqI	GGGAC	1 cut(s)	806
FauI	CCCGC	1 cut(s)	661
FbaI	TGATCA	3 cut(s)	727, 814, 892
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	486, 1012, 1038
FokI	GGATG	3 cut(s)	454, 870, 1013
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	3 cut(s)	486, 1012, 1038
FspBI	CTAG	3 cut(s)	494, 713, 780
GluI	GCNGC	3 cut(s)	486, 1012, 1038
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	46, 1054
HapII	CCGG	2 cut(s)	665, 995
HgaI	GACGC	2 cut(s)	289, 1029
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	2 cut(s)	52, 373
HpaII	CCGG	2 cut(s)	665, 995
HphI	GGTGA	1 cut(s)	812
Hpy166II	GTNNAC	3 cut(s)	161, 171, 407
Hpy188III	TCNNGA	9 cut(s)	56, 256, 352, 584, 671, 698, 812, 896, 1081
Hpy8I	GTNNAC	3 cut(s)	161, 171, 407
Hpy99I	CGWCG	4 cut(s)	26, 283, 1045, 1073
HpyAV	CCTTC	1 cut(s)	948
HpyCH4III	ACNGT	1 cut(s)	967
HpyCH4IV	ACGT	3 cut(s)	517, 971, 1086
HpyCH4V	TGCA	3 cut(s)	289, 475, 1004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	494, 793, 1017
HpyF3I	CTNAG	3 cut(s)	164, 411, 1095
HpySE526I	ACGT	3 cut(s)	517, 971, 1086
Ksp22I	TGATCA	3 cut(s)	727, 814, 892
LguI	GCTCTTC	1 cut(s)	216
LpnPI	CCDG	8 cut(s)	69, 94, 201, 365, 381, 678, 1008, 1068
Lsp1109I	GCAGC	3 cut(s)	497, 1023, 1024
LweI	GCATC	1 cut(s)	991
MaeI	CTAG	3 cut(s)	494, 713, 780
MaeII	ACGT	3 cut(s)	517, 971, 1086
MaeIII	GTNAC	3 cut(s)	370, 800, 967
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	6 cut(s)	175, 344, 461, 526, 562, 871
MlyI	GAGTC	2 cut(s)	46, 367
MmeI	TCCRAC	3 cut(s)	538, 772, 911
MroXI	GAANNNNTTC	1 cut(s)	208
MseI	TTAA	4 cut(s)	525, 542, 617, 767
MslI	CAYNNNNRTG	5 cut(s)	93, 99, 900, 906, 925
MspI	CCGG	2 cut(s)	665, 995
MwoI	GCNNNNNNNGC	3 cut(s)	494, 793, 1017
NcoI	CCATGG	2 cut(s)	47, 624
NmuCI	GTSAC	3 cut(s)	370, 800, 967
PaeR7I	CTCGAG	1 cut(s)	677
PagI	TCATGA	2 cut(s)	895, 1080
PciSI	GCTCTTC	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	1 cut(s)	684
PdmI	GAANNNNTTC	1 cut(s)	208
PkrI	GCNGC	3 cut(s)	487, 1013, 1039
PleI	GAGTC	2 cut(s)	46, 367
PpsI	GAGTC	2 cut(s)	46, 367
Psp124BI	GAGCTC	1 cut(s)	118
Psp1406I	AACGTT	1 cut(s)	1086
PspEI	GGTNACC	1 cut(s)	800
PspPI	GGNCC	1 cut(s)	44
PspXI	VCTCGAGB	1 cut(s)	677
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	5 cut(s)	93, 99, 900, 906, 925
SacI	GAGCTC	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	4 cut(s)	525, 542, 617, 767
SatI	GCNGC	3 cut(s)	486, 1012, 1038
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	2 cut(s)	46, 367
SduI	GDGCHC	1 cut(s)	118
SfaNI	GCATC	1 cut(s)	991
Sfr274I	CTCGAG	1 cut(s)	677
SlaI	CTCGAG	1 cut(s)	677
SmiMI	CAYNNNNRTG	5 cut(s)	93, 99, 900, 906, 925
SmlI	CTYRAG	2 cut(s)	677, 1015
SmoI	CTYRAG	2 cut(s)	677, 1015
Sse9I	AATT	6 cut(s)	175, 344, 461, 526, 562, 871
SsiI	CCGC	2 cut(s)	654, 998
SspMI	CTAG	3 cut(s)	494, 713, 780
SstI	GAGCTC	1 cut(s)	118
StyI	CCWWGG	3 cut(s)	47, 423, 624
TaaI	ACNGT	1 cut(s)	967
TaiI	ACGT	3 cut(s)	520, 974, 1089
TaqI	TCGA	6 cut(s)	363, 447, 585, 591, 678, 1068
TasI	AATT	6 cut(s)	175, 344, 461, 526, 562, 871
Tru1I	TTAA	4 cut(s)	525, 542, 617, 767
Tru9I	TTAA	4 cut(s)	525, 542, 617, 767
TseFI	GTSAC	3 cut(s)	370, 800, 967
TseI	GCWGC	3 cut(s)	485, 1011, 1037
Tsp45I	GTSAC	3 cut(s)	370, 800, 967
TspDTI	ATGAA	6 cut(s)	77, 528, 623, 915, 918, 1097
XhoI	CTCGAG	1 cut(s)	677
XmiI	GTMKAC	1 cut(s)	160
XmnI	GAANNNNTTC	1 cut(s)	208
XspI	CTAG	3 cut(s)	494, 713, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.