Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009034

Physical Location & Seq

Genomic Coordinates Forward (+)

42530818 .. 42532736

Gene Structure 1919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G517400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGGAGATCTCCTTGTTGTGATGAAAGTGGCCTCAAGAAAGGACCCTGGACCCCAGAAGAGGATCAAAAGCTTGTGCAGTACATTGAAGAACATGGCCATGGAAGTTGGAGAGCTCTTCCAAAGCTTGCAGGTCTCAATAGATGTGGCAAGAGTTGTAGGTTAAGATGGACAAATTACTTGAGACCTGATATCAAAAGAGGCAAATTTACTGAAGAAGAGGAGCAAACAATTCTACATCTCCATTCTATCCTTGGAAACAAATGGTCAGCAATTGCAACACACCTAGATGGCCGAACTGACAATGAAATCAAGAATTTCTGGAACACCCATTTGAAGAAAAAGCTGATCCAAATGGGTTTTGATCCAATGACCCATCAACCAAGAACCGATCTCTTTTCCGGTTTGTCTCAGCTTCTGGCCCTGGCAAACCTGCAGGACCTCATGCAGCAATATCAGCCGTTAGATATTGATCAACATGCTGCAACATTACAAGCAGATCAAGCTGCTCAGTTGGCCAAGCTTCAATACATGCAGCATTTGCTCCAATCTGTAGCCTATATAAGCAGTGGTGAGAATTGTAGCCAGAACAGAAACACAGCTGATACAGACATAGAGGCTTTCAATTTGTTGAACTCACTTGTTCCTTCTATCAAAGAAAACCCAATTTTAAATTCATCTCAGCTTGAAAATCCAAGCTCATTTTCTCTTGGATATGGTGGAACTTCTCAACCACCCCACCATCAAAGCCTACTGCCTCATGACCCACAAGTCCCTTTCAGTTCTCTACCATCTTTGAATAGTAATCATGAAATGGGCTCCAACTATACAATGGTCAGCCAAGAAGATAACCCACCTCATGATCATGATGACTCTCCATGGTTTGATAATCTTATGTCTCCTGCTCCTAATTCTATTCCTCCAACTATGACCGGGATGTCGATTAGCAACCCGGGAGGAGATGTCTGCTGCAGCACTTCAAGCTATGGAGGTAGAAGTAGTGGTTCTTCTTCCTACTGGCCTGAGCTCTTTCTTGAGGACGCCAATTATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048580 GO:0048581 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901332 GO:1901363 GO:1901700 GO:1903506 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

352

Amino Acids

39.1

Weight (kDa)

5.45

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34670
fragaria_vesca	FvH4_5g37310
malus_domestica	MD08G1183100.v1.1 MD15G1369700.v1.1
prunus_persica	Prupe.1G517400_v2.0.a1
pyrus_communis	pycom08g15690 pycom15g33080
rosa_chinensis	RchiOBHm_Chr7g0238891 RchiOBHm_Chr7g0238951
rosa_laevigata	RLG00000000795
rosa_multiflora	Rmu_sc0004132.1_g000011
rosa_roxburghii	Rroxscaffold_3G00221470
rosa_rugosa	Rorug07G0323900 Rorug07G0324100
rosa_samantha	Rh7AG478600 Rh7AG478900 Rh7BG451000 Rh7BG451400 Rh7CG496100 Rh7DG463600
rosa_wichuraiana	Rw7G039950 Rw7G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	770, 937
Acc36I	ACCTGC	2 cut(s)	122, 441
AclWI	GGATC	3 cut(s)	72, 343, 359
AcoI	YGGCCR	3 cut(s)	97, 292, 516
AcsI	RAATTY	3 cut(s)	206, 316, 673
AcuI	CTGAAG	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	1041
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	8 cut(s)	89, 337, 527, 625, 634, 689, 799, 981
AjnI	CCWGG	2 cut(s)	47, 423
AjuI	GAANNNNNNNTTGG	4 cut(s)	658, 688, 690, 720
Alw21I	GWGCWC	2 cut(s)	118, 1029
Alw26I	GTCTC	4 cut(s)	140, 178, 414, 903
AlwI	GGATC	3 cut(s)	72, 343, 359
AlwNI	CAGNNNCTG	1 cut(s)	418
Ama87I	CYCGRG	1 cut(s)	952
AoxI	GGCC	6 cut(s)	31, 97, 292, 420, 516, 1019
ApeKI	GCWGC	6 cut(s)	448, 482, 506, 535, 969, 972
ApoI	RAATTY	3 cut(s)	206, 316, 673
AspS9I	GGNCC	4 cut(s)	44, 51, 421, 439
AsuC2I	CCSGG	3 cut(s)	934, 953, 954
AsuHPI	GGTGA	1 cut(s)	584
AvaI	CYCGRG	1 cut(s)	952
AvaII	GGWCC	3 cut(s)	44, 51, 439
BalI	TGGCCA	2 cut(s)	99, 518
BanII	GRGCYC	3 cut(s)	118, 821, 1029
BarI	GAAGNNNNNNTAC	2 cut(s)	991, 1023
Bbv12I	GWGCWC	2 cut(s)	118, 1029
BbvI	GCAGC	6 cut(s)	460, 469, 493, 547, 956, 984
BccI	CCATC	5 cut(s)	162, 284, 384, 750, 799
BceAI	ACGGC	1 cut(s)	445
BciT130I	CCWGG	2 cut(s)	49, 425
BclI	TGATCA	2 cut(s)	472, 862
BcnI	CCSGG	3 cut(s)	934, 953, 954
BcoDI	GTCTC	4 cut(s)	140, 178, 414, 903
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	3 cut(s)	434, 552, 970
BfuAI	ACCTGC	2 cut(s)	122, 441
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	6 cut(s)	449, 483, 507, 536, 970, 973
BlsI	GCNGC	6 cut(s)	450, 484, 508, 537, 971, 974
Bme1390I	CCNGG	5 cut(s)	49, 425, 934, 953, 954
Bme18I	GGWCC	3 cut(s)	44, 51, 439
BmeT110I	CYCGRG	1 cut(s)	952
BmgT120I	GGNCC	4 cut(s)	44, 51, 421, 439
BmiI	GGNNCC	3 cut(s)	46, 53, 820
BmrFI	CCNGG	5 cut(s)	49, 425, 934, 953, 954
Bpu10I	CCTNAGC	1 cut(s)	1023
BpuEI	CTTGAG	3 cut(s)	20, 202, 1055
BpuMI	CCSGG	3 cut(s)	934, 953, 954
BsaBI	GATNNNNATC	1 cut(s)	471
BsaHI	GRCGYC	1 cut(s)	1041
BsaI	GGTCTC	2 cut(s)	140, 178
BsaJI	CCNNGG	6 cut(s)	47, 100, 253, 423, 878, 952
BsaWI	WCCGGW	1 cut(s)	401
BsaXI	ACNNNNNCTCC	2 cut(s)	948, 978
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	1022
Bse8I	GATNNNNATC	1 cut(s)	471
BseBI	CCWGG	2 cut(s)	49, 425
BseDI	CCNNGG	6 cut(s)	47, 100, 253, 423, 878, 952
BseGI	GGATG	1 cut(s)	942
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	4 cut(s)	425, 524, 695, 1014
BseNI	ACTGG	1 cut(s)	1022
BseRI	GAGGAG	2 cut(s)	236, 972
BseXI	GCAGC	6 cut(s)	460, 469, 493, 547, 956, 984
BsgI	GTGCAG	1 cut(s)	98
BshFI	GGCC	6 cut(s)	33, 99, 294, 422, 518, 1021
BsiHKAI	GWGCWC	2 cut(s)	118, 1029
BsiHKCI	CYCGRG	1 cut(s)	952
BsiSI	CCGG	3 cut(s)	402, 933, 953
BslFI	GGGAC	1 cut(s)	758
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	4 cut(s)	140, 178, 414, 903
BsmFI	GGGAC	1 cut(s)	758
BsnI	GGCC	6 cut(s)	33, 99, 294, 422, 518, 1021
Bso31I	GGTCTC	2 cut(s)	140, 178
BsoBI	CYCGRG	1 cut(s)	952
Bsp1286I	GDGCHC	3 cut(s)	118, 821, 1029
Bsp143I	GATC	8 cut(s)	8, 64, 348, 364, 391, 472, 499, 862
Bsp19I	CCATGG	2 cut(s)	100, 878
BspANI	GGCC	6 cut(s)	33, 99, 294, 422, 518, 1021
BspCNI	CTCAG	4 cut(s)	424, 523, 694, 1015
BspHI	TCATGA	4 cut(s)	760, 808, 859, 865
BspLI	GGNNCC	3 cut(s)	46, 53, 820
BspMAI	CTGCAG	2 cut(s)	438, 974
BspMI	ACCTGC	2 cut(s)	122, 441
BspPI	GGATC	3 cut(s)	72, 343, 359
BspQI	GCTCTTC	1 cut(s)	123
BspTNI	GGTCTC	2 cut(s)	140, 178
BsrI	ACTGG	1 cut(s)	1022
BssECI	CCNNGG	6 cut(s)	47, 100, 253, 423, 878, 952
BssMI	GATC	8 cut(s)	8, 64, 348, 364, 391, 472, 499, 862
BssNI	GRCGYC	1 cut(s)	1041
BssT1I	CCWWGG	3 cut(s)	100, 253, 878
Bst2UI	CCWGG	2 cut(s)	49, 425
Bst6I	CTCTTC	3 cut(s)	54, 123, 213
BstACI	GRCGYC	1 cut(s)	1041
BstAPI	GCANNNNNTGC	1 cut(s)	541
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	4 cut(s)	411, 510, 681, 1023
BstDSI	CCRYGG	2 cut(s)	100, 878
BstF5I	GGATG	1 cut(s)	942
BstKTI	GATC	8 cut(s)	11, 67, 351, 367, 394, 475, 502, 865
BstMAI	GTCTC	4 cut(s)	140, 178, 414, 903
BstMBI	GATC	8 cut(s)	8, 64, 348, 364, 391, 472, 499, 862
BstMWI	GCNNNNNNNGC	6 cut(s)	457, 503, 515, 541, 981, 1049
BstNI	CCWGG	2 cut(s)	49, 425
BstNSI	RCATGY	2 cut(s)	482, 535
BstSCI	CCNGG	5 cut(s)	47, 423, 932, 951, 952
BstSFI	CTRYAG	3 cut(s)	434, 552, 970
BstV1I	GCAGC	6 cut(s)	460, 469, 493, 547, 956, 984
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	6 cut(s)	33, 99, 294, 422, 518, 1021
BtgI	CCRYGG	2 cut(s)	100, 878
BtsCI	GGATG	1 cut(s)	942
BtsI	GCAGTG	1 cut(s)	574
BtsIMutI	CAGTG	1 cut(s)	574
BveI	ACCTGC	2 cut(s)	122, 441
Cac8I	GCNNGC	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	418
CciI	TCATGA	4 cut(s)	760, 808, 859, 865
Cfr13I	GGNCC	4 cut(s)	44, 51, 421, 439
Cfr9I	CCCGGG	1 cut(s)	952
CseI	GACGC	1 cut(s)	1049
Csp6I	GTAC	1 cut(s)	82
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	4 cut(s)	411, 510, 681, 1023
DpnI	GATC	8 cut(s)	10, 66, 350, 366, 393, 474, 501, 864
DpnII	GATC	8 cut(s)	8, 64, 348, 364, 391, 472, 499, 862
DraI	TTTAAA	1 cut(s)	672
DrdI	GACNNNNNNGTC	2 cut(s)	770, 937
DseDI	GACNNNNNNGTC	2 cut(s)	770, 937
EaeI	YGGCCR	3 cut(s)	97, 292, 516
Eam1104I	CTCTTC	3 cut(s)	54, 123, 213
EarI	CTCTTC	3 cut(s)	54, 123, 213
Ecl136II	GAGCTC	2 cut(s)	116, 1027
Eco130I	CCWWGG	3 cut(s)	100, 253, 878
Eco24I	GRGCYC	3 cut(s)	118, 821, 1029
Eco31I	GGTCTC	2 cut(s)	140, 178
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	3 cut(s)	44, 51, 439
Eco53kI	GAGCTC	2 cut(s)	116, 1027
Eco57I	CTGAAG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	952
EcoICRI	GAGCTC	2 cut(s)	116, 1027
EcoO109I	RGGNCCY	2 cut(s)	44, 439
EcoRII	CCWGG	2 cut(s)	47, 423
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	3 cut(s)	100, 253, 878
EcoT38I	GRGCYC	3 cut(s)	118, 821, 1029
ErhI	CCWWGG	3 cut(s)	100, 253, 878
FaqI	GGGAC	1 cut(s)	758
FbaI	TGATCA	2 cut(s)	472, 862
Fnu4HI	GCNGC	6 cut(s)	449, 483, 507, 536, 970, 973
FokI	GGATG	1 cut(s)	949
FriOI	GRGCYC	3 cut(s)	118, 821, 1029
Fsp4HI	GCNGC	6 cut(s)	449, 483, 507, 536, 970, 973
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	6 cut(s)	449, 483, 507, 536, 970, 973
HaeIII	GGCC	6 cut(s)	33, 99, 294, 422, 518, 1021
HapII	CCGG	3 cut(s)	402, 933, 953
HgaI	GACGC	1 cut(s)	1049
Hin1I	GRCGYC	1 cut(s)	1041
HindIII	AAGCTT	3 cut(s)	71, 125, 521
HinfI	GANTC	1 cut(s)	872
HpaII	CCGG	3 cut(s)	402, 933, 953
HphI	GGTGA	1 cut(s)	584
Hpy188III	TCNNGA	8 cut(s)	37, 313, 322, 761, 809, 860, 866, 1034
HpyAV	CCTTC	1 cut(s)	657
HpyCH4V	TGCA	8 cut(s)	79, 131, 278, 436, 448, 485, 535, 972
HpyF10VI	GCNNNNNNNGC	6 cut(s)	457, 503, 515, 541, 981, 1049
HpyF3I	CTNAG	4 cut(s)	411, 510, 681, 1023
Hsp92I	GRCGYC	1 cut(s)	1041
Ksp22I	TGATCA	2 cut(s)	472, 862
Kzo9I	GATC	8 cut(s)	8, 64, 348, 364, 391, 472, 499, 862
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	4 cut(s)	223, 549, 824, 910
Lsp1109I	GCAGC	6 cut(s)	460, 469, 493, 547, 956, 984
MaeI	CTAG	1 cut(s)	287
MalI	GATC	8 cut(s)	10, 66, 350, 366, 393, 474, 501, 864
MboI	GATC	8 cut(s)	8, 64, 348, 364, 391, 472, 499, 862
MboII	GAAGA	9 cut(s)	71, 101, 110, 227, 230, 349, 857, 999, 1002
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	3 cut(s)	118, 821, 1029
MlsI	TGGCCA	2 cut(s)	99, 518
MluNI	TGGCCA	2 cut(s)	99, 518
MlyI	GAGTC	1 cut(s)	866
MmeI	TCCRAC	3 cut(s)	89, 846, 947
Mox20I	TGGCCA	2 cut(s)	99, 518
MscI	TGGCCA	2 cut(s)	99, 518
MseI	TTAA	2 cut(s)	164, 671
MslI	CAYNNNNRTG	3 cut(s)	99, 288, 864
Msp20I	TGGCCA	2 cut(s)	99, 518
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	3 cut(s)	402, 933, 953
MspR9I	CCNGG	5 cut(s)	49, 425, 934, 953, 954
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	2 cut(s)	49, 425
MwoI	GCNNNNNNNGC	6 cut(s)	457, 503, 515, 541, 981, 1049
NciI	CCSGG	3 cut(s)	934, 953, 954
NcoI	CCATGG	2 cut(s)	100, 878
NdeII	GATC	8 cut(s)	8, 64, 348, 364, 391, 472, 499, 862
NlaIV	GGNNCC	3 cut(s)	46, 53, 820
NspI	RCATGY	2 cut(s)	482, 535
PagI	TCATGA	4 cut(s)	760, 808, 859, 865
PciSI	GCTCTTC	1 cut(s)	123
PkrI	GCNGC	6 cut(s)	450, 484, 508, 537, 971, 974
PleI	GAGTC	1 cut(s)	866
PpsI	GAGTC	1 cut(s)	866
PpuMI	RGGWCCY	2 cut(s)	44, 439
Psp124BI	GAGCTC	2 cut(s)	118, 1029
Psp5II	RGGWCCY	2 cut(s)	44, 439
Psp6I	CCWGG	2 cut(s)	47, 423
PspGI	CCWGG	2 cut(s)	47, 423
PspN4I	GGNNCC	3 cut(s)	46, 53, 820
PspPI	GGNCC	4 cut(s)	44, 51, 421, 439
PspPPI	RGGWCCY	2 cut(s)	44, 439
PstI	CTGCAG	2 cut(s)	438, 974
PstNI	CAGNNNCTG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	3 cut(s)	99, 288, 864
SacI	GAGCTC	2 cut(s)	118, 1029
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	164, 671
SatI	GCNGC	6 cut(s)	449, 483, 507, 536, 970, 973
Sau3AI	GATC	8 cut(s)	8, 64, 348, 364, 391, 472, 499, 862
Sau96I	GGNCC	4 cut(s)	44, 51, 421, 439
SbfI	CCTGCAGG	1 cut(s)	438
SchI	GAGTC	1 cut(s)	866
ScrFI	CCNGG	5 cut(s)	49, 425, 934, 953, 954
SdaI	CCTGCAGG	1 cut(s)	438
SduI	GDGCHC	3 cut(s)	118, 821, 1029
SfcI	CTRYAG	3 cut(s)	434, 552, 970
SinI	GGWCC	3 cut(s)	44, 51, 439
SmaI	CCCGGG	1 cut(s)	954
SmiMI	CAYNNNNRTG	3 cut(s)	99, 288, 864
SmlI	CTYRAG	3 cut(s)	35, 181, 1034
SmoI	CTYRAG	3 cut(s)	35, 181, 1034
Sse8387I	CCTGCAGG	1 cut(s)	438
SspMI	CTAG	1 cut(s)	287
SstI	GAGCTC	2 cut(s)	118, 1029
StyD4I	CCNGG	5 cut(s)	47, 423, 932, 951, 952
StyI	CCWWGG	3 cut(s)	100, 253, 878
TaqI	TCGA	1 cut(s)	941
TatI	WGTACW	1 cut(s)	81
Tru1I	TTAA	2 cut(s)	164, 671
Tru9I	TTAA	2 cut(s)	164, 671
TscAI	CASTG	1 cut(s)	574
TseI	GCWGC	6 cut(s)	448, 482, 506, 535, 969, 972
TspDTI	ATGAA	4 cut(s)	39, 321, 666, 825
TspMI	CCCGGG	1 cut(s)	952
TspRI	CASTG	1 cut(s)	574
VpaK11BI	GGWCC	3 cut(s)	44, 51, 439
XapI	RAATTY	3 cut(s)	206, 316, 673
XceI	RCATGY	2 cut(s)	482, 535
XcmI	CCANNNNNNNNNTGG	2 cut(s)	251, 829
XmaI	CCCGGG	1 cut(s)	952
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.