Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004132.1

Orthogroup ID

OG0009034

Physical Location & Seq

Genomic Coordinates Forward (+)

41568 .. 42854

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004132.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

atgggaaaatctctttgttgtgatgaacctggactcaagaaaggaccctggactcccgaagaggatcaaaagcttgtgcagtacatccaacaacacggtcatggaagctggcgagctcttcccaagcttgcaggtctcaacagatgtggcaagagctgtaggttgagatggacaaattacttaagacctgatataaaaagaggcaatttttctcaagaggaggagcagaccattctacatctccattctatcctcggaaacaagtacacacttcttcaaccaatttcctcgatccgatcaggttcatttctgtctctatgcttggaatatcacaaactgactcgtcttattttaactacaagatggtcagcaattgcaacacatctagacggacgaactgacaatgagatcaagaatttctggaatactcatttgaagaaaaaactgatccagatggggattgatccgatgacccatcaacccagaactgacctcttctccaacctccaggaccttttgcagccgcaatatcagctgttggatcaacatgctgctacaacattacatggtgctgcagaggctgtagctcagttggtcaagcttcaatacctgcagcagcaatatgtactccaatcacatttgttaaacccgagtgttggtagttatgctcctcctcccataaaagaaaacctcccagttttaaattcatcccatgtagtacttgaaaatcctagctcattttctcaaccactccactatggaaccttggaaccccatcaggacgacccacaagtccgtttcagtacttttgcagtacctgaaattgatgagatgggtcaaggctccaaatttactccaatggtcagtagtctctgccaagcagagaagaacccacctgaaattgatgaatactgtccatggttacttcagtactcttctaatattcctacacctttgggtagtactttaattaacaatcctggagatgccagctgcagcacttctagtaatggaggaataagaagtagtacttcttcttcctactggcccgagctttttcttgaggaaaccaaaaccaattatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048580 GO:0048581 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901332 GO:1901363 GO:1901700 GO:1903506 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

362

Amino Acids

40.81

Weight (kDa)

6.39

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34670
fragaria_vesca	FvH4_5g37310
malus_domestica	MD08G1183100.v1.1 MD15G1369700.v1.1
prunus_persica	Prupe.1G517400_v2.0.a1
pyrus_communis	pycom08g15690 pycom15g33080
rosa_chinensis	RchiOBHm_Chr7g0238891 RchiOBHm_Chr7g0238951
rosa_laevigata	RLG00000000795
rosa_multiflora	Rmu_sc0004132.1_g000011
rosa_roxburghii	Rroxscaffold_3G00221470
rosa_rugosa	Rorug07G0323900 Rorug07G0324100
rosa_samantha	Rh7AG478600 Rh7AG478900 Rh7BG451000 Rh7BG451400 Rh7CG496100 Rh7DG463600
rosa_wichuraiana	Rw7G039950 Rw7G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	791
Acc36I	ACCTGC	2 cut(s)	122, 618
AciI	CCGC	1 cut(s)	524
AclWI	GGATC	5 cut(s)	72, 286, 442, 458, 549
AcsI	RAATTY	3 cut(s)	415, 703, 848
AcuI	CTGAAG	1 cut(s)	911
AfaI	GTAC	9 cut(s)	83, 266, 627, 720, 805, 816, 932, 964, 1030
AfiI	CCNNNNNNNGG	1 cut(s)	656
AflII	CTTAAG	1 cut(s)	181
AgsI	TTSAA	4 cut(s)	278, 436, 605, 725
AjnI	CCWGG	4 cut(s)	28, 47, 507, 979
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	3 cut(s)	140, 318, 875
AlwI	GGATC	5 cut(s)	72, 286, 442, 458, 549
AlwNI	CAGNNNCTG	2 cut(s)	581, 818
Ama87I	CYCGRG	2 cut(s)	649, 1049
AoxI	GGCC	1 cut(s)	1046
ApeKI	GCWGC	7 cut(s)	520, 551, 572, 613, 616, 993, 996
ApoI	RAATTY	3 cut(s)	415, 703, 848
AspS9I	GGNCC	3 cut(s)	44, 511, 1047
AvaI	CYCGRG	2 cut(s)	649, 1049
AvaII	GGWCC	2 cut(s)	44, 511
BanII	GRGCYC	1 cut(s)	118
BarI	GAAGNNNNNNTAC	4 cut(s)	1018, 1021, 1050, 1053
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	7 cut(s)	532, 538, 559, 625, 628, 980, 1008
BccI	CCATC	6 cut(s)	162, 357, 448, 483, 783, 826
BciT130I	CCWGG	4 cut(s)	30, 49, 509, 981
BcoDI	GTCTC	3 cut(s)	140, 318, 875
BfaI	CTAG	3 cut(s)	386, 732, 1005
BfmI	CTRYAG	5 cut(s)	157, 573, 582, 611, 994
BfrI	CTTAAG	1 cut(s)	181
BfuAI	ACCTGC	2 cut(s)	122, 618
BisI	GCNGC	8 cut(s)	521, 524, 552, 573, 614, 617, 994, 997
BlsI	GCNGC	8 cut(s)	522, 525, 553, 574, 615, 618, 995, 998
BmcAI	AGTACT	5 cut(s)	720, 805, 932, 964, 1030
Bme1390I	CCNGG	4 cut(s)	30, 49, 509, 981
Bme18I	GGWCC	2 cut(s)	44, 511
BmeT110I	CYCGRG	2 cut(s)	649, 1049
BmgT120I	GGNCC	3 cut(s)	44, 511, 1047
BmiI	GGNNCC	4 cut(s)	46, 763, 771, 844
BmrFI	CCNGG	4 cut(s)	30, 49, 509, 981
BmrI	ACTGGG	1 cut(s)	689
BmsI	GCATC	1 cut(s)	976
BmuI	ACTGGG	1 cut(s)	689
BpmI	CTGGAG	2 cut(s)	491, 1002
BpuEI	CTTGAG	3 cut(s)	20, 198, 1082
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	4 cut(s)	47, 253, 765, 917
BsaXI	ACNNNNNCTCC	2 cut(s)	482, 512
Bsc4I	CCNNNNNNNGG	1 cut(s)	656
Bse1I	ACTGG	2 cut(s)	695, 1049
BseBI	CCWGG	4 cut(s)	30, 49, 509, 981
BseDI	CCNNGG	4 cut(s)	47, 253, 765, 917
BseGI	GGATG	2 cut(s)	84, 707
BseLI	CCNNNNNNNGG	1 cut(s)	656
BseMII	CTCAG	1 cut(s)	602
BseNI	ACTGG	2 cut(s)	695, 1049
BseRI	GAGGAG	4 cut(s)	233, 236, 660, 663
BseXI	GCAGC	7 cut(s)	532, 538, 559, 625, 628, 980, 1008
BsgI	GTGCAG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	1048
BsiHKAI	GWGCWC	1 cut(s)	118
BsiHKCI	CYCGRG	2 cut(s)	649, 1049
BslI	CCNNNNNNNGG	1 cut(s)	656
BsmAI	GTCTC	3 cut(s)	140, 318, 875
BsnI	GGCC	1 cut(s)	1048
Bso31I	GGTCTC	1 cut(s)	140
BsoBI	CYCGRG	2 cut(s)	649, 1049
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	7 cut(s)	64, 291, 296, 408, 447, 463, 541
Bsp19I	CCATGG	1 cut(s)	917
BspACI	CCGC	1 cut(s)	524
BspANI	GGCC	1 cut(s)	1048
BspCNI	CTCAG	1 cut(s)	601
BspLI	GGNNCC	4 cut(s)	46, 763, 771, 844
BspMAI	CTGCAG	3 cut(s)	577, 615, 998
BspMI	ACCTGC	2 cut(s)	122, 618
BspPI	GGATC	5 cut(s)	72, 286, 442, 458, 549
BspQI	GCTCTTC	1 cut(s)	123
BspTI	CTTAAG	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	695, 1049
BssECI	CCNNGG	4 cut(s)	47, 253, 765, 917
BssMI	GATC	7 cut(s)	64, 291, 296, 408, 447, 463, 541
BssT1I	CCWWGG	2 cut(s)	765, 917
Bst2UI	CCWGG	4 cut(s)	30, 49, 509, 981
Bst4CI	ACNGT	2 cut(s)	98, 914
Bst6I	CTCTTC	4 cut(s)	54, 123, 500, 940
BstAFI	CTTAAG	1 cut(s)	181
BstC8I	GCNNGC	4 cut(s)	110, 114, 129, 991
BstDEI	CTNAG	1 cut(s)	588
BstDSI	CCRYGG	1 cut(s)	917
BstF5I	GGATG	2 cut(s)	84, 707
BstKTI	GATC	7 cut(s)	67, 294, 299, 411, 450, 466, 544
BstMAI	GTCTC	3 cut(s)	140, 318, 875
BstMBI	GATC	7 cut(s)	64, 291, 296, 408, 447, 463, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	532, 578
BstNI	CCWGG	4 cut(s)	30, 49, 509, 981
BstNSI	RCATGY	1 cut(s)	551
BstSCI	CCNGG	4 cut(s)	28, 47, 507, 979
BstSFI	CTRYAG	5 cut(s)	157, 573, 582, 611, 994
BstV1I	GCAGC	7 cut(s)	532, 538, 559, 625, 628, 980, 1008
BsuRI	GGCC	1 cut(s)	1048
BtgI	CCRYGG	1 cut(s)	917
BtsCI	GGATG	2 cut(s)	84, 707
BveI	ACCTGC	2 cut(s)	122, 618
Cac8I	GCNNGC	4 cut(s)	110, 114, 129, 991
CaiI	CAGNNNCTG	2 cut(s)	581, 818
Cfr13I	GGNCC	3 cut(s)	44, 511, 1047
Csp6I	GTAC	9 cut(s)	82, 265, 626, 719, 804, 815, 931, 963, 1029
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	5 cut(s)	101, 548, 566, 713, 918
CviQI	GTAC	9 cut(s)	82, 265, 626, 719, 804, 815, 931, 963, 1029
DdeI	CTNAG	1 cut(s)	588
DpnI	GATC	7 cut(s)	66, 293, 298, 410, 449, 465, 543
DpnII	GATC	7 cut(s)	64, 291, 296, 408, 447, 463, 541
DraI	TTTAAA	1 cut(s)	702
DrdI	GACNNNNNNGTC	1 cut(s)	791
DseDI	GACNNNNNNGTC	1 cut(s)	791
Eam1104I	CTCTTC	4 cut(s)	54, 123, 500, 940
EarI	CTCTTC	4 cut(s)	54, 123, 500, 940
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	2 cut(s)	765, 917
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	140
Eco47I	GGWCC	2 cut(s)	44, 511
Eco53kI	GAGCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	911
Eco88I	CYCGRG	2 cut(s)	649, 1049
EcoICRI	GAGCTC	1 cut(s)	116
EcoO109I	RGGNCCY	2 cut(s)	44, 511
EcoRII	CCWGG	4 cut(s)	28, 47, 507, 979
EcoT14I	CCWWGG	2 cut(s)	765, 917
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	2 cut(s)	765, 917
FaeI	CATG	5 cut(s)	104, 551, 569, 716, 921
FalI	AAGNNNNNCTT	2 cut(s)	1015, 1047
FatI	CATG	5 cut(s)	100, 547, 565, 712, 917
Fnu4HI	GCNGC	8 cut(s)	521, 524, 552, 573, 614, 617, 994, 997
FokI	GGATG	2 cut(s)	71, 694
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	8 cut(s)	521, 524, 552, 573, 614, 617, 994, 997
FspBI	CTAG	3 cut(s)	386, 732, 1005
GluI	GCNGC	8 cut(s)	521, 524, 552, 573, 614, 617, 994, 997
GsuI	CTGGAG	2 cut(s)	491, 1002
HaeIII	GGCC	1 cut(s)	1048
Hin1II	CATG	5 cut(s)	104, 551, 569, 716, 921
HindIII	AAGCTT	3 cut(s)	71, 125, 599
HinfI	GANTC	3 cut(s)	33, 52, 340
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	3 cut(s)	257, 296, 468
Hpy188III	TCNNGA	9 cut(s)	37, 56, 215, 386, 412, 421, 451, 779, 1061
Hpy8I	GTNNAC	1 cut(s)	267
HpyCH4III	ACNGT	2 cut(s)	98, 914
HpyCH4V	TGCA	8 cut(s)	79, 131, 377, 520, 575, 613, 812, 996
HpyF10VI	GCNNNNNNNGC	2 cut(s)	532, 578
HpyF3I	CTNAG	1 cut(s)	588
Hsp92II	CATG	5 cut(s)	104, 551, 569, 716, 921
Kzo9I	GATC	7 cut(s)	64, 291, 296, 408, 447, 463, 541
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	3 cut(s)	223, 673, 848
Lsp1109I	GCAGC	7 cut(s)	532, 538, 559, 625, 628, 980, 1008
LweI	GCATC	1 cut(s)	976
MaeI	CTAG	3 cut(s)	386, 732, 1005
MaeIII	GTNAC	1 cut(s)	921
MalI	GATC	7 cut(s)	66, 293, 298, 410, 449, 465, 543
MboI	GATC	7 cut(s)	64, 291, 296, 408, 447, 463, 541
MboII	GAAGA	9 cut(s)	71, 110, 266, 448, 487, 898, 927, 1026, 1029
MfeI	CAATTG	1 cut(s)	372
MhlI	GDGCHC	1 cut(s)	118
MlyI	GAGTC	3 cut(s)	27, 46, 334
MmeI	TCCRAC	3 cut(s)	112, 519, 525
MseI	TTAA	6 cut(s)	182, 353, 644, 701, 968, 972
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	2 cut(s)	535, 993
MspCI	CTTAAG	1 cut(s)	181
MspR9I	CCNGG	4 cut(s)	30, 49, 509, 981
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	4 cut(s)	30, 49, 509, 981
MwoI	GCNNNNNNNGC	2 cut(s)	532, 578
NcoI	CCATGG	1 cut(s)	917
NdeII	GATC	7 cut(s)	64, 291, 296, 408, 447, 463, 541
NlaIII	CATG	5 cut(s)	104, 551, 569, 716, 921
NlaIV	GGNNCC	4 cut(s)	46, 763, 771, 844
NspI	RCATGY	1 cut(s)	551
PacI	TTAATTAA	1 cut(s)	972
PciSI	GCTCTTC	1 cut(s)	123
PfoI	TCCNGGA	2 cut(s)	507, 979
PkrI	GCNGC	8 cut(s)	522, 525, 553, 574, 615, 618, 995, 998
PleI	GAGTC	3 cut(s)	27, 46, 334
PpsI	GAGTC	3 cut(s)	27, 46, 334
PpuMI	RGGWCCY	2 cut(s)	44, 511
Psp124BI	GAGCTC	1 cut(s)	118
Psp5II	RGGWCCY	2 cut(s)	44, 511
Psp6I	CCWGG	4 cut(s)	28, 47, 507, 979
PspGI	CCWGG	4 cut(s)	28, 47, 507, 979
PspN4I	GGNNCC	4 cut(s)	46, 763, 771, 844
PspPI	GGNCC	3 cut(s)	44, 511, 1047
PspPPI	RGGWCCY	2 cut(s)	44, 511
PstI	CTGCAG	3 cut(s)	577, 615, 998
PstNI	CAGNNNCTG	2 cut(s)	581, 818
PvuII	CAGCTG	2 cut(s)	535, 993
RsaI	GTAC	9 cut(s)	83, 266, 627, 720, 805, 816, 932, 964, 1030
RsaNI	GTAC	9 cut(s)	82, 265, 626, 719, 804, 815, 931, 963, 1029
RseI	CAYNNNNRTG	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	6 cut(s)	182, 353, 644, 701, 968, 972
SatI	GCNGC	8 cut(s)	521, 524, 552, 573, 614, 617, 994, 997
Sau3AI	GATC	7 cut(s)	64, 291, 296, 408, 447, 463, 541
Sau96I	GGNCC	3 cut(s)	44, 511, 1047
ScaI	AGTACT	5 cut(s)	720, 805, 932, 964, 1030
SchI	GAGTC	3 cut(s)	27, 46, 334
ScrFI	CCNGG	4 cut(s)	30, 49, 509, 981
SduI	GDGCHC	1 cut(s)	118
SfaNI	GCATC	1 cut(s)	976
SfcI	CTRYAG	5 cut(s)	157, 573, 582, 611, 994
SinI	GGWCC	2 cut(s)	44, 511
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	4 cut(s)	35, 181, 213, 1061
SmoI	CTYRAG	4 cut(s)	35, 181, 213, 1061
SsiI	CCGC	1 cut(s)	524
SspI	AATATT	1 cut(s)	943
SspMI	CTAG	3 cut(s)	386, 732, 1005
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	4 cut(s)	28, 47, 507, 979
StyI	CCWWGG	2 cut(s)	765, 917
TaaI	ACNGT	2 cut(s)	98, 914
TaqI	TCGA	1 cut(s)	290
TatI	WGTACW	8 cut(s)	81, 264, 625, 718, 803, 930, 962, 1028
TauI	GCSGC	1 cut(s)	526
Tru1I	TTAA	6 cut(s)	182, 353, 644, 701, 968, 972
Tru9I	TTAA	6 cut(s)	182, 353, 644, 701, 968, 972
TseI	GCWGC	7 cut(s)	520, 551, 572, 613, 616, 993, 996
TspDTI	ATGAA	4 cut(s)	39, 294, 696, 921
TspGWI	ACGGA	2 cut(s)	405, 785
Vha464I	CTTAAG	1 cut(s)	181
VpaK11BI	GGWCC	2 cut(s)	44, 511
XapI	RAATTY	3 cut(s)	415, 703, 848
XbaI	TCTAGA	1 cut(s)	385
XceI	RCATGY	1 cut(s)	551
XspI	CTAG	3 cut(s)	386, 732, 1005
ZrmI	AGTACT	5 cut(s)	720, 805, 932, 964, 1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.