Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0009034

Physical Location & Seq

Genomic Coordinates Forward (+)

22701012 .. 22702656

Gene Structure 1645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1183100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGGAGATCTCCCTGTAGTGATGAAAGTGGTCTCAAGAAAGGACCGTGGACTCCAGAAGAGGATCAAAAGCTTGTGCAATACATTGAACAACATGGCCATGGAAGTTGGAGAGCTCTTCCAAGGCTTGCAGGTCTCAATAGATGTGGCAAGAGTTGCAGGCTAAGATGGACGAACTACTTAAGACCTGATATCAAAAGAGGCAAATTTTCTGAAGAAGAGGAGCAAACAATTCTTCATCTCCATTCTATCCTTGGAAACAAATGGTCAGCAATTGCAACACACTTAGACGGCCGAACGGACAATGAAATCAAGAACTTCTGGAACACACATTTGAAGAAGAAGCTGATCCAGATGGGTTTTGATCCAATGACCCATCAGCCAAGAACTGATCTATTTTCCAGCTTATCTCAGCTTTTAGCCCTAGCTAACCTGCAGGATCTCATGCAGCAATATCAGCCCGCAGATCACATTAATCAACATGCTGCAACATTACAAGCAGATCAAGCAGTTCAGTTGTCCAAGCTTCAATACATGCAGCATTTACTTCAATCCGTACCTTATACAAGCAACACTGACAATTACAGGCAAAACAGAAGCACCGAGATGGAAATGGAAATGGATGATCAGGCTTTTAATTTGCTAAACTCACTTAATATTTCTCCCATCAAAGAAAACCCAAATTTTAATTCACCACAACTGGAAAATCCAAGCTCATTTTCTGATCACGGATATGGTCGTAATTCTTCTCAACCACTCCACCATCATCAAACCCAACTGCCTTATGACCTAGCAGACCCACAAGTCCCTTTCAGTTCTCTACCATCTTTGAATAACAGTGATCATGAAATGGGCCAGGGCTCCAACTTTAAAATGGTCAGTAGTCAAGAAAATAACCTACCCGATGAATCTCCATGGTTTAATAATCTTTTATCTCCTACTGCTCCCTCTATTCCTCCCTCTATTTCTCCAACCAGCAATGTTCCTGGAGATGCGTGCTGCAGCAGTTCTAGCTATGGAGGCAGAAGTAGTAATTCTTCATCCTACTGGCCTGAACTATTTCTTGAGGACGCCAATTATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048580 GO:0048581 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901332 GO:1901363 GO:1901700 GO:1903506 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

362

Amino Acids

40.77

Weight (kDa)

5.72

Isoelectric Point (pI)

57.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.1e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	1.2e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	6.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 116	2e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34670
fragaria_vesca	FvH4_5g37310
malus_domestica	MD08G1183100.v1.1 MD15G1369700.v1.1
prunus_persica	Prupe.1G517400_v2.0.a1
pyrus_communis	pycom08g15690 pycom15g33080
rosa_chinensis	RchiOBHm_Chr7g0238891 RchiOBHm_Chr7g0238951
rosa_laevigata	RLG00000000795
rosa_multiflora	Rmu_sc0004132.1_g000011
rosa_roxburghii	Rroxscaffold_3G00221470
rosa_rugosa	Rorug07G0323900 Rorug07G0324100
rosa_samantha	Rh7AG478600 Rh7AG478900 Rh7BG451000 Rh7BG451400 Rh7CG496100 Rh7DG463600
rosa_wichuraiana	Rw7G039950 Rw7G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	803
Acc36I	ACCTGC	2 cut(s)	122, 441
AciI	CCGC	1 cut(s)	462
AclWI	GGATC	4 cut(s)	72, 343, 359, 447
AcoI	YGGCCR	2 cut(s)	97, 292
AcsI	RAATTY	2 cut(s)	206, 682
AcuI	CTGAAG	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	1071
AfaI	GTAC	1 cut(s)	558
AflII	CTTAAG	1 cut(s)	181
AgsI	TTSAA	5 cut(s)	89, 337, 530, 551, 832
AjnI	CCWGG	2 cut(s)	855, 985
AjuI	GAANNNNNNNTTGG	4 cut(s)	673, 703, 705, 735
AluBI	AGCT	9 cut(s)	73, 116, 346, 405, 415, 428, 526, 714, 1014
AluI	AGCT	9 cut(s)	73, 116, 346, 405, 415, 428, 526, 714, 1014
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	2 cut(s)	38, 140
AlwI	GGATC	4 cut(s)	72, 343, 359, 447
AoxI	GGCC	4 cut(s)	97, 292, 853, 1049
ApeKI	GCWGC	5 cut(s)	448, 485, 538, 999, 1002
ApoI	RAATTY	2 cut(s)	206, 682
AseI	ATTAAT	1 cut(s)	474
Asp700I	GAANNNNTTC	1 cut(s)	1059
AspS9I	GGNCC	2 cut(s)	44, 853
AsuHPI	GGTGA	1 cut(s)	684
AvaII	GGWCC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	2 cut(s)	118, 863
BarI	GAAGNNNNNNTAC	2 cut(s)	1021, 1053
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	5 cut(s)	460, 472, 550, 986, 1014
BccI	CCATC	7 cut(s)	162, 349, 384, 601, 674, 771, 832
BceAI	ACGGC	1 cut(s)	307
BciT130I	CCWGG	2 cut(s)	857, 987
BclI	TGATCA	3 cut(s)	625, 724, 841
BcoDI	GTCTC	2 cut(s)	38, 140
BfaI	CTAG	3 cut(s)	425, 791, 1011
BfmI	CTRYAG	3 cut(s)	16, 434, 1000
BfrI	CTTAAG	1 cut(s)	181
BfuAI	ACCTGC	2 cut(s)	122, 441
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	5 cut(s)	449, 486, 539, 1000, 1003
BlsI	GCNGC	5 cut(s)	450, 487, 540, 1001, 1004
Bme1390I	CCNGG	2 cut(s)	857, 987
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	44, 853
BmiI	GGNNCC	1 cut(s)	862
BmrFI	CCNGG	2 cut(s)	857, 987
BmsI	GCATC	1 cut(s)	982
BpmI	CTGGAG	2 cut(s)	39, 1008
BpuEI	CTTGAG	2 cut(s)	20, 1085
BsaHI	GRCGYC	1 cut(s)	1071
BsaI	GGTCTC	2 cut(s)	38, 140
BsaJI	CCNNGG	6 cut(s)	47, 100, 122, 253, 856, 914
Bse1I	ACTGG	2 cut(s)	705, 1052
Bse3DI	GCAATG	1 cut(s)	985
BseBI	CCWGG	2 cut(s)	857, 987
BseDI	CCNNGG	6 cut(s)	47, 100, 122, 253, 856, 914
BseGI	GGATG	2 cut(s)	628, 1040
BseMI	GCAATG	1 cut(s)	985
BseMII	CTCAG	1 cut(s)	425
BseNI	ACTGG	2 cut(s)	705, 1052
BseRI	GAGGAG	1 cut(s)	236
BseX3I	CGGCCG	1 cut(s)	292
BseXI	GCAGC	5 cut(s)	460, 472, 550, 986, 1014
Bsh1285I	CGRYCG	1 cut(s)	295
BshFI	GGCC	4 cut(s)	99, 294, 855, 1051
BsiEI	CGRYCG	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	791
BsmAI	GTCTC	2 cut(s)	38, 140
BsmFI	GGGAC	1 cut(s)	791
BsnI	GGCC	4 cut(s)	99, 294, 855, 1051
Bso31I	GGTCTC	2 cut(s)	38, 140
Bsp1286I	GDGCHC	2 cut(s)	118, 863
Bsp19I	CCATGG	2 cut(s)	100, 914
BspACI	CCGC	1 cut(s)	462
BspANI	GGCC	4 cut(s)	99, 294, 855, 1051
BspCNI	CTCAG	1 cut(s)	424
BspHI	TCATGA	1 cut(s)	844
BspLI	GGNNCC	1 cut(s)	862
BspMAI	CTGCAG	2 cut(s)	438, 1004
BspMI	ACCTGC	2 cut(s)	122, 441
BspPI	GGATC	4 cut(s)	72, 343, 359, 447
BspQI	GCTCTTC	1 cut(s)	123
BspTI	CTTAAG	1 cut(s)	181
BspTNI	GGTCTC	2 cut(s)	38, 140
BsrDI	GCAATG	1 cut(s)	985
BsrI	ACTGG	2 cut(s)	705, 1052
BssECI	CCNNGG	6 cut(s)	47, 100, 122, 253, 856, 914
BssNI	GRCGYC	1 cut(s)	1071
BssT1I	CCWWGG	4 cut(s)	100, 122, 253, 914
Bst2UI	CCWGG	2 cut(s)	857, 987
Bst4CI	ACNGT	2 cut(s)	48, 839
Bst6I	CTCTTC	3 cut(s)	54, 123, 213
BstACI	GRCGYC	1 cut(s)	1071
BstAFI	CTTAAG	1 cut(s)	181
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstC8I	GCNNGC	4 cut(s)	129, 161, 462, 997
BstDEI	CTNAG	3 cut(s)	164, 286, 411
BstDSI	CCRYGG	3 cut(s)	47, 100, 914
BstF5I	GGATG	2 cut(s)	628, 1040
BstMAI	GTCTC	2 cut(s)	38, 140
BstMCI	CGRYCG	1 cut(s)	295
BstMWI	GCNNNNNNNGC	5 cut(s)	156, 457, 506, 1011, 1020
BstNI	CCWGG	2 cut(s)	857, 987
BstNSI	RCATGY	2 cut(s)	485, 538
BstSCI	CCNGG	2 cut(s)	855, 985
BstSFI	CTRYAG	3 cut(s)	16, 434, 1000
BstV1I	GCAGC	5 cut(s)	460, 472, 550, 986, 1014
BstX2I	RGATCY	2 cut(s)	8, 439
BstYI	RGATCY	2 cut(s)	8, 439
BstZI	CGGCCG	1 cut(s)	292
BsuRI	GGCC	4 cut(s)	99, 294, 855, 1051
BtgI	CCRYGG	3 cut(s)	47, 100, 914
BtsCI	GGATG	2 cut(s)	628, 1040
BtsIMutI	CAGTG	2 cut(s)	573, 844
BveI	ACCTGC	2 cut(s)	122, 441
Cac8I	GCNNGC	4 cut(s)	129, 161, 462, 997
CciI	TCATGA	1 cut(s)	844
Cfr13I	GGNCC	2 cut(s)	44, 853
CseI	GACGC	1 cut(s)	1079
Csp6I	GTAC	1 cut(s)	557
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	7 cut(s)	95, 101, 445, 482, 535, 845, 915
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	3 cut(s)	164, 286, 411
DraI	TTTAAA	1 cut(s)	871
DrdI	GACNNNNNNGTC	1 cut(s)	803
DseDI	GACNNNNNNGTC	1 cut(s)	803
EaeI	YGGCCR	2 cut(s)	97, 292
EagI	CGGCCG	1 cut(s)	292
Eam1104I	CTCTTC	3 cut(s)	54, 123, 213
EarI	CTCTTC	3 cut(s)	54, 123, 213
Ecl136II	GAGCTC	1 cut(s)	116
EclXI	CGGCCG	1 cut(s)	292
Eco130I	CCWWGG	4 cut(s)	100, 122, 253, 914
Eco24I	GRGCYC	2 cut(s)	118, 863
Eco31I	GGTCTC	2 cut(s)	38, 140
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	44
Eco52I	CGGCCG	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	116
EcoRII	CCWGG	2 cut(s)	855, 985
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	4 cut(s)	100, 122, 253, 914
EcoT38I	GRGCYC	2 cut(s)	118, 863
ErhI	CCWWGG	4 cut(s)	100, 122, 253, 914
FaeI	CATG	7 cut(s)	98, 104, 448, 485, 538, 848, 918
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	7 cut(s)	94, 100, 444, 481, 534, 844, 914
FauI	CCCGC	1 cut(s)	469
FbaI	TGATCA	3 cut(s)	625, 724, 841
Fnu4HI	GCNGC	5 cut(s)	449, 486, 539, 1000, 1003
FokI	GGATG	2 cut(s)	635, 1027
FriOI	GRGCYC	2 cut(s)	118, 863
Fsp4HI	GCNGC	5 cut(s)	449, 486, 539, 1000, 1003
FspBI	CTAG	3 cut(s)	425, 791, 1011
GluI	GCNGC	5 cut(s)	449, 486, 539, 1000, 1003
GsuI	CTGGAG	2 cut(s)	39, 1008
HaeIII	GGCC	4 cut(s)	99, 294, 855, 1051
HgaI	GACGC	1 cut(s)	1079
Hin1I	GRCGYC	1 cut(s)	1071
Hin1II	CATG	7 cut(s)	98, 104, 448, 485, 538, 848, 918
HindIII	AAGCTT	2 cut(s)	71, 524
HinfI	GANTC	2 cut(s)	52, 908
HphI	GGTGA	1 cut(s)	684
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	214, 724
Hpy188III	TCNNGA	8 cut(s)	37, 56, 313, 322, 352, 845, 887, 1064
Hpy8I	GTNNAC	1 cut(s)	51
HpyCH4III	ACNGT	2 cut(s)	48, 839
HpyCH4V	TGCA	9 cut(s)	79, 131, 159, 278, 436, 448, 488, 538, 1002
HpyF10VI	GCNNNNNNNGC	5 cut(s)	156, 457, 506, 1011, 1020
HpyF3I	CTNAG	3 cut(s)	164, 286, 411
Hsp92I	GRCGYC	1 cut(s)	1071
Hsp92II	CATG	7 cut(s)	98, 104, 448, 485, 538, 848, 918
Ksp22I	TGATCA	3 cut(s)	625, 724, 841
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	3 cut(s)	223, 866, 949
Lsp1109I	GCAGC	5 cut(s)	460, 472, 550, 986, 1014
LweI	GCATC	1 cut(s)	982
MaeI	CTAG	3 cut(s)	425, 791, 1011
MboII	GAAGA	9 cut(s)	71, 110, 227, 227, 230, 349, 352, 738, 1029
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	2 cut(s)	8, 439
MhlI	GDGCHC	2 cut(s)	118, 863
MlsI	TGGCCA	1 cut(s)	99
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	3 cut(s)	89, 888, 995
MnlI	CCTC	8 cut(s)	55, 194, 214, 958, 966, 970, 1013, 1060
Mox20I	TGGCCA	1 cut(s)	99
MroXI	GAANNNNTTC	1 cut(s)	1059
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	7 cut(s)	182, 474, 636, 654, 687, 870, 921
MslI	CAYNNNNRTG	3 cut(s)	99, 605, 732
Msp20I	TGGCCA	1 cut(s)	99
MspCI	CTTAAG	1 cut(s)	181
MspR9I	CCNGG	2 cut(s)	857, 987
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	2 cut(s)	857, 987
MwoI	GCNNNNNNNGC	5 cut(s)	156, 457, 506, 1011, 1020
NcoI	CCATGG	2 cut(s)	100, 914
NlaIII	CATG	7 cut(s)	98, 104, 448, 485, 538, 848, 918
NlaIV	GGNNCC	1 cut(s)	862
NspI	RCATGY	2 cut(s)	485, 538
PagI	TCATGA	1 cut(s)	844
PciSI	GCTCTTC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	1059
PfeI	GAWTC	1 cut(s)	908
PfoI	TCCNGGA	1 cut(s)	985
PkrI	GCNGC	5 cut(s)	450, 487, 540, 1001, 1004
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	474
Psp124BI	GAGCTC	1 cut(s)	118
Psp6I	CCWGG	2 cut(s)	855, 985
PspGI	CCWGG	2 cut(s)	855, 985
PspN4I	GGNNCC	1 cut(s)	862
PspPI	GGNCC	2 cut(s)	44, 853
PstI	CTGCAG	2 cut(s)	438, 1004
PsuI	RGATCY	2 cut(s)	8, 439
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
RseI	CAYNNNNRTG	3 cut(s)	99, 605, 732
SacI	GAGCTC	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	7 cut(s)	182, 474, 636, 654, 687, 870, 921
SatI	GCNGC	5 cut(s)	449, 486, 539, 1000, 1003
Sau96I	GGNCC	2 cut(s)	44, 853
SbfI	CCTGCAGG	1 cut(s)	438
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	857, 987
SdaI	CCTGCAGG	1 cut(s)	438
SduI	GDGCHC	2 cut(s)	118, 863
SfaNI	GCATC	1 cut(s)	982
SfcI	CTRYAG	3 cut(s)	16, 434, 1000
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	3 cut(s)	99, 605, 732
SmlI	CTYRAG	3 cut(s)	35, 181, 1064
SmoI	CTYRAG	3 cut(s)	35, 181, 1064
Sse8387I	CCTGCAGG	1 cut(s)	438
SsiI	CCGC	1 cut(s)	462
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	3 cut(s)	425, 791, 1011
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	2 cut(s)	855, 985
StyI	CCWWGG	4 cut(s)	100, 122, 253, 914
TaaI	ACNGT	2 cut(s)	48, 839
TfiI	GAWTC	1 cut(s)	908
Tru1I	TTAA	7 cut(s)	182, 474, 636, 654, 687, 870, 921
Tru9I	TTAA	7 cut(s)	182, 474, 636, 654, 687, 870, 921
TscAI	CASTG	2 cut(s)	580, 844
TseI	GCWGC	5 cut(s)	448, 485, 538, 999, 1002
TspDTI	ATGAA	6 cut(s)	39, 227, 321, 861, 921, 1029
TspGWI	ACGGA	3 cut(s)	314, 544, 744
TspRI	CASTG	2 cut(s)	580, 844
Vha464I	CTTAAG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	44
VspI	ATTAAT	1 cut(s)	474
XapI	RAATTY	2 cut(s)	206, 682
XceI	RCATGY	2 cut(s)	485, 538
XcmI	CCANNNNNNNNNTGG	2 cut(s)	251, 871
XmnI	GAANNNNTTC	1 cut(s)	1059
XspI	CTAG	3 cut(s)	425, 791, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.