Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009034

Physical Location & Seq

Genomic Coordinates Reverse (-)

66068975 .. 66087873

Gene Structure 18899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG463600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCTGAGCTGCCGTCTTTGCATGGGGAAGAGGCTGTAGCTCAGTTGGTCAAGCTTCAATACCTGCAGCAGCAATATGTACTCCAATCACATTTGTTAAACCCGAGTGTTGGTAGTTATGCTCCTCCTCCCATAAAAGAAAACCTCCCAGTTTTAAATTCATCCCATGTAGTACTTGAAAATCCTAGCTCATTTTCTCAACCACTCCACTATGGAACCTTGGAACCCCATCAGGACAACCCACAAGTCCGTTTCAGTACTTTTGCAGTACCTGAAATTGATGAGATGGGTCAAGGCTCCAAATTTACTCCAATGGTCAGTAGTCTCTGCCAAGCAGAGAAGAACCCACCTGAAATTGATGAATACTGTCCATGGTTTCTTCAGTACTCTTCTAATATTCCTACACCTTTGGGTAGTACTTTAATTAACAATCCTGGAGATGCCAGCTGCAGCACTTCTAGTAATGGAGGAATAAGAAGTAGTACTTCTTCTTCCTACTGGCCCGAGCTTTTTCTTGAGGAAACCAAAACCAATTATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048580 GO:0048581 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901332 GO:1901363 GO:1901700 GO:1903506 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

180

Amino Acids

19.86

Weight (kDa)

4.62

Isoelectric Point (pI)

61.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34670
fragaria_vesca	FvH4_5g37310
malus_domestica	MD08G1183100.v1.1 MD15G1369700.v1.1
prunus_persica	Prupe.1G517400_v2.0.a1
pyrus_communis	pycom08g15690 pycom15g33080
rosa_chinensis	RchiOBHm_Chr7g0238891 RchiOBHm_Chr7g0238951
rosa_laevigata	RLG00000000795
rosa_multiflora	Rmu_sc0004132.1_g000011
rosa_roxburghii	Rroxscaffold_3G00221470
rosa_rugosa	Rorug07G0323900 Rorug07G0324100
rosa_samantha	Rh7AG478600 Rh7AG478900 Rh7BG451000 Rh7BG451400 Rh7CG496100 Rh7DG463600
rosa_wichuraiana	Rw7G039950 Rw7G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	72
AcsI	RAATTY	2 cut(s)	157, 302
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	7 cut(s)	81, 174, 259, 270, 386, 418, 484
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	59, 179
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	6 cut(s)	10, 41, 55, 189, 447, 508
AluI	AGCT	6 cut(s)	10, 41, 55, 189, 447, 508
Alw26I	GTCTC	1 cut(s)	329
AlwNI	CAGNNNCTG	1 cut(s)	272
Ama87I	CYCGRG	2 cut(s)	103, 503
AoxI	GGCC	1 cut(s)	500
ApeKI	GCWGC	5 cut(s)	10, 67, 70, 447, 450
ApoI	RAATTY	2 cut(s)	157, 302
AspS9I	GGNCC	1 cut(s)	501
AvaI	CYCGRG	2 cut(s)	103, 503
BarI	GAAGNNNNNNTAC	4 cut(s)	472, 475, 504, 507
BbvI	GCAGC	4 cut(s)	79, 82, 434, 462
BccI	CCATC	2 cut(s)	237, 280
BciT130I	CCWGG	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	2 cut(s)	186, 459
BfmI	CTRYAG	3 cut(s)	36, 65, 448
BfuAI	ACCTGC	1 cut(s)	72
BisI	GCNGC	5 cut(s)	11, 68, 71, 448, 451
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	5 cut(s)	12, 69, 72, 449, 452
BmcAI	AGTACT	5 cut(s)	174, 259, 386, 418, 484
Bme1390I	CCNGG	1 cut(s)	435
BmeT110I	CYCGRG	2 cut(s)	103, 503
BmgT120I	GGNCC	1 cut(s)	501
BmiI	GGNNCC	3 cut(s)	217, 225, 298
BmrFI	CCNGG	1 cut(s)	435
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	430
BmuI	ACTGGG	1 cut(s)	143
BpmI	CTGGAG	1 cut(s)	456
Bpu1102I	GCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	219, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	149, 503
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	2 cut(s)	219, 371
BseGI	GGATG	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	2 cut(s)	149, 503
BseRI	GAGGAG	2 cut(s)	114, 117
BseXI	GCAGC	4 cut(s)	79, 82, 434, 462
BshFI	GGCC	1 cut(s)	502
BsiHKCI	CYCGRG	2 cut(s)	103, 503
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	502
BsoBI	CYCGRG	2 cut(s)	103, 503
Bsp1720I	GCTNAGC	1 cut(s)	6
Bsp19I	CCATGG	1 cut(s)	371
BspANI	GGCC	1 cut(s)	502
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	3 cut(s)	217, 225, 298
BspMAI	CTGCAG	2 cut(s)	69, 452
BspMI	ACCTGC	1 cut(s)	72
BsrI	ACTGG	2 cut(s)	149, 503
BssECI	CCNNGG	2 cut(s)	219, 371
BssT1I	CCWWGG	2 cut(s)	219, 371
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	2 cut(s)	24, 394
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	2 cut(s)	6, 42
BstDSI	CCRYGG	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	161
BstMAI	GTCTC	1 cut(s)	329
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	3 cut(s)	36, 65, 448
BstV1I	GCAGC	4 cut(s)	79, 82, 434, 462
BsuRI	GGCC	1 cut(s)	502
BtgI	CCRYGG	1 cut(s)	371
BtsCI	GGATG	1 cut(s)	161
BveI	ACCTGC	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	445
CaiI	CAGNNNCTG	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	501
Csp6I	GTAC	7 cut(s)	80, 173, 258, 269, 385, 417, 483
CviAII	CATG	3 cut(s)	23, 167, 372
CviQI	GTAC	7 cut(s)	80, 173, 258, 269, 385, 417, 483
DdeI	CTNAG	2 cut(s)	6, 42
DraI	TTTAAA	1 cut(s)	156
Eam1104I	CTCTTC	2 cut(s)	24, 394
EarI	CTCTTC	2 cut(s)	24, 394
Eco130I	CCWWGG	2 cut(s)	219, 371
Eco57I	CTGAAG	1 cut(s)	365
Eco88I	CYCGRG	2 cut(s)	103, 503
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	2 cut(s)	219, 371
ErhI	CCWWGG	2 cut(s)	219, 371
FaeI	CATG	3 cut(s)	26, 170, 375
FaiI	YATR	8 cut(s)	24, 78, 120, 134, 168, 213, 373, 537
FalI	AAGNNNNNCTT	2 cut(s)	469, 501
FatI	CATG	3 cut(s)	22, 166, 371
Fnu4HI	GCNGC	5 cut(s)	11, 68, 71, 448, 451
FokI	GGATG	1 cut(s)	148
Fsp4HI	GCNGC	5 cut(s)	11, 68, 71, 448, 451
FspBI	CTAG	2 cut(s)	186, 459
GluI	GCNGC	5 cut(s)	11, 68, 71, 448, 451
GsuI	CTGGAG	1 cut(s)	456
HaeIII	GGCC	1 cut(s)	502
Hin1II	CATG	3 cut(s)	26, 170, 375
HindIII	AAGCTT	1 cut(s)	53
Hpy188III	TCNNGA	2 cut(s)	233, 515
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4V	TGCA	4 cut(s)	22, 67, 266, 450
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	2 cut(s)	6, 42
Hsp92II	CATG	3 cut(s)	26, 170, 375
LmnI	GCTCC	2 cut(s)	127, 302
LpnPI	CCDG	9 cut(s)	77, 162, 218, 285, 363, 420, 447, 457, 484
Lsp1109I	GCAGC	4 cut(s)	79, 82, 434, 462
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	2 cut(s)	186, 459
MboII	GAAGA	6 cut(s)	41, 352, 371, 381, 480, 483
MluCI	AATT	6 cut(s)	157, 276, 302, 354, 423, 532
MnlI	CCTC	6 cut(s)	25, 135, 138, 155, 461, 511
MseI	TTAA	4 cut(s)	98, 155, 422, 426
MspA1I	CMGCKG	1 cut(s)	447
MspR9I	CCNGG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	1 cut(s)	19
NcoI	CCATGG	1 cut(s)	371
NlaIII	CATG	3 cut(s)	26, 170, 375
NlaIV	GGNNCC	3 cut(s)	217, 225, 298
PacI	TTAATTAA	1 cut(s)	426
PfoI	TCCNGGA	1 cut(s)	433
PkrI	GCNGC	5 cut(s)	12, 69, 72, 449, 452
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	3 cut(s)	217, 225, 298
PspPI	GGNCC	1 cut(s)	501
PstI	CTGCAG	2 cut(s)	69, 452
PstNI	CAGNNNCTG	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	447
RsaI	GTAC	7 cut(s)	81, 174, 259, 270, 386, 418, 484
RsaNI	GTAC	7 cut(s)	80, 173, 258, 269, 385, 417, 483
SaqAI	TTAA	4 cut(s)	98, 155, 422, 426
SatI	GCNGC	5 cut(s)	11, 68, 71, 448, 451
Sau96I	GGNCC	1 cut(s)	501
ScaI	AGTACT	5 cut(s)	174, 259, 386, 418, 484
ScrFI	CCNGG	1 cut(s)	435
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	3 cut(s)	36, 65, 448
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	6 cut(s)	157, 276, 302, 354, 423, 532
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	2 cut(s)	186, 459
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	2 cut(s)	219, 371
TaaI	ACNGT	1 cut(s)	368
TasI	AATT	6 cut(s)	157, 276, 302, 354, 423, 532
TatI	WGTACW	6 cut(s)	79, 172, 257, 384, 416, 482
Tru1I	TTAA	4 cut(s)	98, 155, 422, 426
Tru9I	TTAA	4 cut(s)	98, 155, 422, 426
TseI	GCWGC	5 cut(s)	10, 67, 70, 447, 450
TspDTI	ATGAA	2 cut(s)	150, 375
TspGWI	ACGGA	1 cut(s)	239
XapI	RAATTY	2 cut(s)	157, 302
XspI	CTAG	2 cut(s)	186, 459
ZrmI	AGTACT	5 cut(s)	174, 259, 386, 418, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.