Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009034

Physical Location & Seq

Genomic Coordinates Reverse (-)

52935085 .. 52936343

Gene Structure 1259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG451000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGAAAATCTCCTTGTTGTGATGAACCTGGACTCAAGAAAGGGCCCTGGACTCCCGAAGAGGATGAAAAGCTTGTGCAGTACATCCAACAACACGGTCATGGAAGCTGGCGAGCTCTTCCCAAGCTTGCAGGTCTCAACAGATGTGGCAAGAGCTGTAGGTTGAGATGGACAAATTACTTAAGACCTGATATAAAAAGAGGTAATTTTTCTCAAGAGGAGGAGCAGACCATTCTACATCTCCATTCTATCCTCGGAAACAAATGGTCAGCAATTGCAACACATCTAGACGGACGAACTGACAATGAGATCAAGAATTTCTGGAATACTCAATTGAAGAAAAAACTGATCCAGATGGGGATTGATCCGATGACCCATCAACCCAGAACTGACCTCTTCTCCAACCTCCAGGACCTTTTGCCGCTGCAATTTCAGCCGTTGGATCAACTTGCTACAACATTACTTGATGCTGCAGAAGCTGTAGCTCAGTTGGTCAAGCTTCAATACCTGCACCAGCAATATGTACTCCAATCACATTTGTTAAACTCAAGTGTTGGTAGTTATGCTCCTCCTCCTATAAAAGAAAACCTCCCAGTTTTAAATTCATCCCAACTGGTACTTGAAAATGCTAGCTCATCTTCTCAACCACTCCACTATGGAAGCTTAGTACCCCATCACAACAACCCACAAGTCCCTTTCAGTACTTTTGGAGTCCCTGAAATTGATGAAATTGGTCAATGCACGAACTTTACTTCAATGGTCAGTAGTCTCAGCCAAGCAGAGAAGAACCCACCTGAAATTTATGAATACTCTCCATACTCTTCTAATACTCCTACACCTTTGGCTGATACTTTAATTAACAATCCTGGAGATGCCAGCTGCAGCACTTCCAGTAGTGGAGGAATAAGTACTTCTTCTTCTGCCTACTGGCTTGAACTTTTCCTTAAAGAAAACCAAAACCAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048580 GO:0048581 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901332 GO:1901363 GO:1901700 GO:1903506 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

322

Amino Acids

35.89

Weight (kDa)

5.87

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	4.3e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	2.7e-15	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	2.4e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 115	3.3e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34670
fragaria_vesca	FvH4_5g37310
malus_domestica	MD08G1183100.v1.1 MD15G1369700.v1.1
prunus_persica	Prupe.1G517400_v2.0.a1
pyrus_communis	pycom08g15690 pycom15g33080
rosa_chinensis	RchiOBHm_Chr7g0238891 RchiOBHm_Chr7g0238951
rosa_laevigata	RLG00000000795
rosa_multiflora	Rmu_sc0004132.1_g000011
rosa_roxburghii	Rroxscaffold_3G00221470
rosa_rugosa	Rorug07G0323900 Rorug07G0324100
rosa_samantha	Rh7AG478600 Rh7AG478900 Rh7BG451000 Rh7BG451400 Rh7CG496100 Rh7DG463600
rosa_wichuraiana	Rw7G039950 Rw7G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	122, 516
AciI	CCGC	1 cut(s)	422
AclWI	GGATC	3 cut(s)	343, 359, 450
AcsI	RAATTY	3 cut(s)	316, 601, 798
AfaI	GTAC	6 cut(s)	83, 525, 618, 669, 703, 910
AflII	CTTAAG	1 cut(s)	181
AgsI	TTSAA	5 cut(s)	337, 503, 623, 756, 935
AjnI	CCWGG	4 cut(s)	28, 47, 408, 865
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	2 cut(s)	140, 773
AlwI	GGATC	3 cut(s)	343, 359, 450
AlwNI	CAGNNNCTG	1 cut(s)	479
AoxI	GGCC	1 cut(s)	44
ApaI	GGGCCC	1 cut(s)	48
ApeKI	GCWGC	4 cut(s)	424, 470, 879, 882
ApoI	RAATTY	3 cut(s)	316, 601, 798
AspS9I	GGNCC	3 cut(s)	44, 45, 412
AsuNHI	GCTAGC	1 cut(s)	629
AvaII	GGWCC	1 cut(s)	412
BaeGI	GKGCMC	1 cut(s)	48
BanII	GRGCYC	2 cut(s)	48, 118
BarI	GAAGNNNNNNTAC	2 cut(s)	901, 933
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	4 cut(s)	411, 457, 866, 894
BccI	CCATC	4 cut(s)	162, 349, 384, 681
BceAI	ACGGC	1 cut(s)	421
BciT130I	CCWGG	4 cut(s)	30, 49, 410, 867
BcoDI	GTCTC	2 cut(s)	140, 773
BfaI	CTAG	2 cut(s)	287, 630
BfmI	CTRYAG	4 cut(s)	157, 471, 480, 880
BfrI	CTTAAG	1 cut(s)	181
BfuAI	ACCTGC	2 cut(s)	122, 516
BisI	GCNGC	5 cut(s)	422, 425, 471, 880, 883
BlsI	GCNGC	5 cut(s)	423, 426, 472, 881, 884
BmcAI	AGTACT	2 cut(s)	703, 910
Bme1390I	CCNGG	4 cut(s)	30, 49, 410, 867
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	3 cut(s)	44, 45, 412
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	4 cut(s)	30, 49, 410, 867
BmrI	ACTGGG	1 cut(s)	587
BmsI	GCATC	2 cut(s)	457, 862
BmtI	GCTAGC	1 cut(s)	633
BmuI	ACTGGG	1 cut(s)	587
BpmI	CTGGAG	2 cut(s)	392, 888
BpuEI	CTTGAG	3 cut(s)	20, 198, 532
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	47, 253
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bse1I	ACTGG	4 cut(s)	593, 618, 891, 932
BseBI	CCWGG	4 cut(s)	30, 49, 410, 867
BseDI	CCNNGG	2 cut(s)	47, 253
BseGI	GGATG	3 cut(s)	70, 84, 605
BseMII	CTCAG	2 cut(s)	500, 784
BseNI	ACTGG	4 cut(s)	593, 618, 891, 932
BseRI	GAGGAG	4 cut(s)	233, 236, 558, 561
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	4 cut(s)	411, 457, 866, 894
BsgI	GTGCAG	2 cut(s)	98, 494
BshFI	GGCC	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	118
BslFI	GGGAC	2 cut(s)	677, 698
BsmAI	GTCTC	2 cut(s)	140, 773
BsmFI	GGGAC	2 cut(s)	677, 698
BsnI	GGCC	1 cut(s)	46
Bso31I	GGTCTC	1 cut(s)	140
Bsp120I	GGGCCC	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	48, 118
Bsp143I	GATC	4 cut(s)	309, 348, 364, 442
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	2 cut(s)	499, 783
BspLI	GGNNCC	1 cut(s)	46
BspMAI	CTGCAG	2 cut(s)	475, 884
BspMI	ACCTGC	2 cut(s)	122, 516
BspOI	GCTAGC	1 cut(s)	633
BspPI	GGATC	3 cut(s)	343, 359, 450
BspQI	GCTCTTC	1 cut(s)	123
BspTI	CTTAAG	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	140
BsrI	ACTGG	4 cut(s)	593, 618, 891, 932
BssECI	CCNNGG	2 cut(s)	47, 253
BssMI	GATC	4 cut(s)	309, 348, 364, 442
Bst2UI	CCWGG	4 cut(s)	30, 49, 410, 867
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	4 cut(s)	54, 123, 401, 826
BstAFI	CTTAAG	1 cut(s)	181
BstC8I	GCNNGC	5 cut(s)	110, 114, 129, 631, 877
BstDEI	CTNAG	3 cut(s)	486, 664, 770
BstF5I	GGATG	3 cut(s)	70, 84, 605
BstKTI	GATC	4 cut(s)	312, 351, 367, 445
BstMAI	GTCTC	2 cut(s)	140, 773
BstMBI	GATC	4 cut(s)	309, 348, 364, 442
BstMWI	GCNNNNNNNGC	2 cut(s)	433, 476
BstNI	CCWGG	4 cut(s)	30, 49, 410, 867
BstSCI	CCNGG	4 cut(s)	28, 47, 408, 865
BstSFI	CTRYAG	4 cut(s)	157, 471, 480, 880
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	4 cut(s)	411, 457, 866, 894
BsuRI	GGCC	1 cut(s)	46
BtsCI	GGATG	3 cut(s)	70, 84, 605
BveI	ACCTGC	2 cut(s)	122, 516
Cac8I	GCNNGC	5 cut(s)	110, 114, 129, 631, 877
CaiI	CAGNNNCTG	1 cut(s)	479
Cfr13I	GGNCC	3 cut(s)	44, 45, 412
Csp6I	GTAC	6 cut(s)	82, 524, 617, 668, 702, 909
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	1 cut(s)	101
CviQI	GTAC	6 cut(s)	82, 524, 617, 668, 702, 909
DdeI	CTNAG	3 cut(s)	486, 664, 770
DpnI	GATC	4 cut(s)	311, 350, 366, 444
DpnII	GATC	4 cut(s)	309, 348, 364, 442
DraI	TTTAAA	1 cut(s)	600
Eam1104I	CTCTTC	4 cut(s)	54, 123, 401, 826
EarI	CTCTTC	4 cut(s)	54, 123, 401, 826
Ecl136II	GAGCTC	1 cut(s)	116
Eco24I	GRGCYC	2 cut(s)	48, 118
Eco31I	GGTCTC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	412
Eco53kI	GAGCTC	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	116
EcoO109I	RGGNCCY	3 cut(s)	44, 45, 412
EcoRII	CCWGG	4 cut(s)	28, 47, 408, 865
EcoT38I	GRGCYC	2 cut(s)	48, 118
FaeI	CATG	1 cut(s)	104
FaiI	YATR	9 cut(s)	102, 194, 522, 564, 578, 657, 804, 817, 967
FalI	AAGNNNNNCTT	2 cut(s)	898, 930
FaqI	GGGAC	2 cut(s)	677, 698
FatI	CATG	1 cut(s)	100
Fnu4HI	GCNGC	5 cut(s)	422, 425, 471, 880, 883
FokI	GGATG	3 cut(s)	71, 77, 592
FriOI	GRGCYC	2 cut(s)	48, 118
Fsp4HI	GCNGC	5 cut(s)	422, 425, 471, 880, 883
FspBI	CTAG	2 cut(s)	287, 630
GluI	GCNGC	5 cut(s)	422, 425, 471, 880, 883
GsuI	CTGGAG	2 cut(s)	392, 888
HaeIII	GGCC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	104
HindIII	AAGCTT	4 cut(s)	71, 125, 497, 661
HinfI	GANTC	3 cut(s)	33, 52, 711
Hpy188I	TCNGA	2 cut(s)	257, 369
Hpy188III	TCNNGA	7 cut(s)	37, 56, 215, 287, 313, 322, 352
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4V	TGCA	8 cut(s)	79, 131, 278, 427, 473, 511, 741, 882
HpyF10VI	GCNNNNNNNGC	2 cut(s)	433, 476
HpyF3I	CTNAG	3 cut(s)	486, 664, 770
Hsp92II	CATG	1 cut(s)	104
Kzo9I	GATC	4 cut(s)	309, 348, 364, 442
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	2 cut(s)	223, 571
Lsp1109I	GCAGC	4 cut(s)	411, 457, 866, 894
LweI	GCATC	2 cut(s)	457, 862
MaeI	CTAG	2 cut(s)	287, 630
MalI	GATC	4 cut(s)	311, 350, 366, 444
MboI	GATC	4 cut(s)	309, 348, 364, 442
MboII	GAAGA	9 cut(s)	71, 110, 349, 388, 630, 796, 813, 906, 909
MfeI	CAATTG	2 cut(s)	273, 332
MhlI	GDGCHC	2 cut(s)	48, 118
MlyI	GAGTC	3 cut(s)	27, 46, 720
MmeI	TCCRAC	3 cut(s)	112, 420, 426
MseI	TTAA	6 cut(s)	182, 542, 599, 854, 858, 945
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	2 cut(s)	424, 879
MspCI	CTTAAG	1 cut(s)	181
MspR9I	CCNGG	4 cut(s)	30, 49, 410, 867
MunI	CAATTG	2 cut(s)	273, 332
MvaI	CCWGG	4 cut(s)	30, 49, 410, 867
MwoI	GCNNNNNNNGC	2 cut(s)	433, 476
NdeII	GATC	4 cut(s)	309, 348, 364, 442
NheI	GCTAGC	1 cut(s)	629
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	46
PacI	TTAATTAA	1 cut(s)	858
PciSI	GCTCTTC	1 cut(s)	123
PfoI	TCCNGGA	2 cut(s)	408, 865
PkrI	GCNGC	5 cut(s)	423, 426, 472, 881, 884
PleI	GAGTC	3 cut(s)	27, 46, 719
PpsI	GAGTC	3 cut(s)	27, 46, 719
PpuMI	RGGWCCY	1 cut(s)	412
Psp124BI	GAGCTC	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	412
Psp6I	CCWGG	4 cut(s)	28, 47, 408, 865
PspGI	CCWGG	4 cut(s)	28, 47, 408, 865
PspN4I	GGNNCC	1 cut(s)	46
PspOMI	GGGCCC	1 cut(s)	44
PspPI	GGNCC	3 cut(s)	44, 45, 412
PspPPI	RGGWCCY	1 cut(s)	412
PstI	CTGCAG	2 cut(s)	475, 884
PstNI	CAGNNNCTG	1 cut(s)	479
PvuII	CAGCTG	1 cut(s)	879
RsaI	GTAC	6 cut(s)	83, 525, 618, 669, 703, 910
RsaNI	GTAC	6 cut(s)	82, 524, 617, 668, 702, 909
RseI	CAYNNNNRTG	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	6 cut(s)	182, 542, 599, 854, 858, 945
SatI	GCNGC	5 cut(s)	422, 425, 471, 880, 883
Sau3AI	GATC	4 cut(s)	309, 348, 364, 442
Sau96I	GGNCC	3 cut(s)	44, 45, 412
ScaI	AGTACT	2 cut(s)	703, 910
SchI	GAGTC	3 cut(s)	27, 46, 720
ScrFI	CCNGG	4 cut(s)	30, 49, 410, 867
SduI	GDGCHC	2 cut(s)	48, 118
SfaNI	GCATC	2 cut(s)	457, 862
SfcI	CTRYAG	4 cut(s)	157, 471, 480, 880
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	4 cut(s)	35, 181, 213, 547
SmoI	CTYRAG	4 cut(s)	35, 181, 213, 547
SsiI	CCGC	1 cut(s)	422
SspMI	CTAG	2 cut(s)	287, 630
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	4 cut(s)	28, 47, 408, 865
TaaI	ACNGT	1 cut(s)	98
TatI	WGTACW	4 cut(s)	81, 523, 701, 908
TauI	GCSGC	1 cut(s)	424
Tru1I	TTAA	6 cut(s)	182, 542, 599, 854, 858, 945
Tru9I	TTAA	6 cut(s)	182, 542, 599, 854, 858, 945
TseI	GCWGC	4 cut(s)	424, 470, 879, 882
TspDTI	ATGAA	5 cut(s)	39, 81, 594, 741, 819
TspGWI	ACGGA	1 cut(s)	306
Vha464I	CTTAAG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	3 cut(s)	316, 601, 798
XbaI	TCTAGA	1 cut(s)	286
XspI	CTAG	2 cut(s)	287, 630
ZrmI	AGTACT	2 cut(s)	703, 910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.