Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0015447

Physical Location & Seq

Genomic Coordinates Forward (+)

61784815 .. 61786202

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAGGCTGCTTAGTCACAACATGCTGTCTTCCAACATTAAAGGCGTGACCAACGGCTTTCCTCTGCGAATTGAAGCAGAGAAGGTAGTGGTAAAGCTGGTGGACTTGAATGTTTGTTTCCTGAAGAACATGTTTCCTAAGATCGAGTGGAAAGCCCTTGTAGAGGCTTCTCGTACAATGGGCTATGCCGAGCTCCCTGAGGAGGTCGAGCCTTCTAAGCTCGATTCTGGGGAATTCCTGCAAAAGTTCCATCATGCCCTTTTGGAGCTTGTTCTTGAGGAGGGTGCTCTTGTTTGCCCTGAAACTGGTCGCCGGTTTCCTGTTTCAAAGGGGATACCAAACATGTTACTTCATGAGGACGAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008213 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018364 GO:0019538 GO:0022613 GO:0030488 GO:0031167 GO:0032259 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0036265 GO:0040007 GO:0042127 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048589 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070475 GO:0070476 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trm112p

Protein Analysis

122

Amino Acids

13.79

Weight (kDa)

5.57

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trm112p	PF03966	6 - 111	6.3e-08	Trm112p-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22270
fragaria_vesca	FvH4_5g37330
malus_domestica	MD08G1182900.v1.1 MD15G1369300.v1.1
prunus_persica	Prupe.1G517100_v2.0.a1
pyrus_communis	pycom08g15670 pycom15g33060
rosa_chinensis	RchiOBHm_Chr7g0238971
rosa_multiflora	Rmu_sc0004132.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221430
rosa_rugosa	Rorug07G0324100
rosa_samantha	Rh7AG479100 Rh7BG451700 Rh7CG496400 Rh7DG463800
rosa_wichuraiana	Rw7G039990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	3 cut(s)	163, 202, 305
AflIII	ACRYGT	2 cut(s)	129, 342
AgsI	TTSAA	3 cut(s)	74, 109, 327
AluBI	AGCT	4 cut(s)	97, 193, 220, 268
AluI	AGCT	4 cut(s)	97, 193, 220, 268
Alw21I	GWGCWC	2 cut(s)	195, 289
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	1 cut(s)	233
AxyI	CCTNAGG	1 cut(s)	198
BanII	GRGCYC	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	2 cut(s)	195, 289
BccI	CCATC	1 cut(s)	258
BceAI	ACGGC	1 cut(s)	70
BciVI	GTATCC	1 cut(s)	327
BfuI	GTATCC	1 cut(s)	327
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 202, 305
Bse118I	RCCGGY	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	310
Bse21I	CCTNAGG	1 cut(s)	198
BseLI	CCNNNNNNNGG	3 cut(s)	163, 202, 305
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	2 cut(s)	215, 293
BsiHKAI	GWGCWC	2 cut(s)	195, 289
BsiSI	CCGG	1 cut(s)	313
BslI	CCNNNNNNNGG	3 cut(s)	163, 202, 305
Bsp1286I	GDGCHC	2 cut(s)	195, 289
Bsp143I	GATC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	312
BssMI	GATC	1 cut(s)	141
BstDEI	CTNAG	4 cut(s)	11, 138, 198, 216
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstKTI	GATC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNSI	RCATGY	3 cut(s)	25, 133, 346
BstV2I	GAAGAC	1 cut(s)	21
Bsu36I	CCTNAGG	1 cut(s)	198
BsuI	GTATCC	1 cut(s)	327
CciI	TCATGA	1 cut(s)	352
Cfr10I	RCCGGY	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	5 cut(s)	22, 130, 254, 343, 353
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	4 cut(s)	11, 138, 198, 216
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	143
Eco81I	CCTNAGG	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	193
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	233
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	5 cut(s)	25, 133, 257, 346, 356
FaiI	YATR	6 cut(s)	23, 131, 186, 255, 344, 354
FatI	CATG	5 cut(s)	21, 129, 253, 342, 352
Fnu4HI	GCNGC	1 cut(s)	8
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	8
GluI	GCNGC	1 cut(s)	8
HapII	CCGG	1 cut(s)	313
Hin1II	CATG	5 cut(s)	25, 133, 257, 346, 356
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	368
Hpy188III	TCNNGA	3 cut(s)	121, 275, 353
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	76, 222
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	4 cut(s)	11, 138, 198, 216
Hsp92II	CATG	5 cut(s)	25, 133, 257, 346, 356
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	2 cut(s)	198, 265
LpnPI	CCDG	9 cut(s)	83, 134, 210, 213, 251, 291, 312, 326, 333
MaeIII	GTNAC	3 cut(s)	14, 46, 345
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	2 cut(s)	21, 136
MhlI	GDGCHC	2 cut(s)	195, 289
MluCI	AATT	2 cut(s)	69, 233
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	8 cut(s)	72, 157, 193, 196, 271, 274, 349, 355
MseI	TTAA	1 cut(s)	39
MspI	CCGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	5 cut(s)	25, 133, 257, 346, 356
NmeAIII	GCCGAG	1 cut(s)	214
NmuCI	GTSAC	2 cut(s)	14, 46
NspI	RCATGY	3 cut(s)	25, 133, 346
PagI	TCATGA	1 cut(s)	352
PciI	ACATGT	2 cut(s)	129, 342
PfeI	GAWTC	1 cut(s)	224
PflFI	GACNNNGTC	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	9
PscI	ACATGT	2 cut(s)	129, 342
Psp124BI	GAGCTC	1 cut(s)	195
PsyI	GACNNNGTC	1 cut(s)	362
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	1 cut(s)	141
SduI	GDGCHC	2 cut(s)	195, 289
SetI	ASST	7 cut(s)	87, 99, 195, 207, 222, 270, 366
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	69, 233
SstI	GAGCTC	1 cut(s)	195
TaqI	TCGA	3 cut(s)	144, 207, 222
TasI	AATT	2 cut(s)	69, 233
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseFI	GTSAC	2 cut(s)	14, 46
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	2 cut(s)	14, 46
TspDTI	ATGAA	1 cut(s)	341
Tth111I	GACNNNGTC	1 cut(s)	362
XagI	CCTNNNNNAGG	1 cut(s)	161
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	3 cut(s)	25, 133, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.