Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015447

Physical Location & Seq

Genomic Coordinates Reverse (-)

42514987 .. 42516246

Gene Structure 1260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G517100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAGGCTGCTAACCCACAACATGCTATCTTCCAACATCAAAGGCGTGACCAACGGCTTCCCTCTGCGCATTGAAATAGAGAAGGTCGTGGAGAAGCAGGTTGACTTCAATGCTGATTTCCTTAGGAACATGTTCCCTAAGATCGAGTGGAAGGCCCTCGTGGGCGCCGCTCGTACTTTGGGCTATGTTGAGCTCCCTGAGGAGGTTGAGCCCTCCAGGCTTGATTCTGAAGATTTTCTGCGCAAGTTCCATCATGCCCTTTTGGAGCTTCATCTCGAGGAGGGTGCGCTTGTTTGCCCCGAGACTGGTCGCCGGTTTCCGGTTTCTAAGGGAATACCCAATATGCTACTTCATGAAGACGAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008213 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018364 GO:0019538 GO:0022613 GO:0030488 GO:0031167 GO:0032259 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0036265 GO:0040007 GO:0042127 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048589 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070475 GO:0070476 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trm112p

Protein Analysis

123

Amino Acids

14.01

Weight (kDa)

5.53

Isoelectric Point (pI)

53.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22270
fragaria_vesca	FvH4_5g37330
malus_domestica	MD08G1182900.v1.1 MD15G1369300.v1.1
prunus_persica	Prupe.1G517100_v2.0.a1
pyrus_communis	pycom08g15670 pycom15g33060
rosa_chinensis	RchiOBHm_Chr7g0238971
rosa_multiflora	Rmu_sc0004132.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221430
rosa_rugosa	Rorug07G0324100
rosa_samantha	Rh7AG479100 Rh7BG451700 Rh7CG496400 Rh7DG463800
rosa_wichuraiana	Rw7G039990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	68, 242
Acc36I	ACCTGC	1 cut(s)	88
AccB1I	GGYRCC	1 cut(s)	164
AccBSI	CCGCTC	1 cut(s)	170
AciI	CCGC	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	3 cut(s)	202, 305, 319
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	74, 109
AjnI	CCWGG	1 cut(s)	215
AluBI	AGCT	2 cut(s)	193, 268
AluI	AGCT	2 cut(s)	193, 268
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	296
Ama87I	CYCGRG	2 cut(s)	275, 299
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	7
Asp700I	GAANNNNTTC	2 cut(s)	131, 234
AspLEI	GCGC	4 cut(s)	69, 167, 243, 289
AspS9I	GGNCC	1 cut(s)	154
AvaI	CYCGRG	2 cut(s)	275, 299
AxyI	CCTNAGG	2 cut(s)	122, 198
BanI	GGYRCC	1 cut(s)	164
BanII	GRGCYC	2 cut(s)	195, 213
BauI	CACGAG	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	195
BccI	CCATC	1 cut(s)	258
BceAI	ACGGC	1 cut(s)	70
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BciT130I	CCWGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	296
BfoI	RGCGCY	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	88
BglI	GCCNNNNNGGC	1 cut(s)	217
BisI	GCNGC	2 cut(s)	8, 168
BlsI	GCNGC	2 cut(s)	9, 169
Bme1390I	CCNGG	1 cut(s)	217
BmeT110I	CYCGRG	2 cut(s)	275, 299
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	363
BpmI	CTGGAG	1 cut(s)	199
BsaHI	GRCGYC	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 305, 319
Bse118I	RCCGGY	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	310
Bse21I	CCTNAGG	2 cut(s)	122, 198
BseBI	CCWGG	1 cut(s)	217
BseLI	CCNNNNNNNGG	3 cut(s)	202, 305, 319
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	2 cut(s)	215, 293
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	2 cut(s)	275, 299
BsiSI	CCGG	2 cut(s)	313, 320
BslI	CCNNNNNNNGG	3 cut(s)	202, 305, 319
BsmAI	GTCTC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	155
BsoBI	CYCGRG	2 cut(s)	275, 299
Bsp1286I	GDGCHC	2 cut(s)	195, 213
Bsp143I	GATC	1 cut(s)	141
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	166
BspMI	ACCTGC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	312
BssMI	GATC	1 cut(s)	141
BssNI	GRCGYC	1 cut(s)	165
BssSI	CACGAG	1 cut(s)	158
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	217
BstACI	GRCGYC	1 cut(s)	165
BstDEI	CTNAG	4 cut(s)	122, 138, 198, 327
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	4 cut(s)	69, 167, 243, 289
BstKTI	GATC	1 cut(s)	144
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNI	CCWGG	1 cut(s)	217
BstNSI	RCATGY	2 cut(s)	25, 133
BstSCI	CCNGG	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	363
Bsu36I	CCTNAGG	2 cut(s)	122, 198
BsuRI	GGCC	1 cut(s)	155
BveI	ACCTGC	1 cut(s)	88
CciI	TCATGA	1 cut(s)	352
CfoI	GCGC	4 cut(s)	69, 167, 243, 289
Cfr10I	RCCGGY	1 cut(s)	312
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	4 cut(s)	22, 130, 254, 353
CviJI	RGCY	8 cut(s)	7, 57, 155, 183, 193, 211, 220, 268
CviKI_1	RGCY	8 cut(s)	7, 57, 155, 183, 193, 211, 220, 268
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	4 cut(s)	122, 138, 198, 327
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	2 cut(s)	195, 213
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	249
Eco81I	CCTNAGG	2 cut(s)	122, 198
Eco88I	CYCGRG	2 cut(s)	275, 299
EcoICRI	GAGCTC	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	215
EcoT38I	GRGCYC	2 cut(s)	195, 213
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
FaeI	CATG	4 cut(s)	25, 133, 257, 356
FaiI	YATR	6 cut(s)	23, 131, 186, 255, 344, 354
FatI	CATG	4 cut(s)	21, 129, 253, 352
Fnu4HI	GCNGC	2 cut(s)	8, 168
FriOI	GRGCYC	2 cut(s)	195, 213
Fsp4HI	GCNGC	2 cut(s)	8, 168
FspI	TGCGCA	2 cut(s)	68, 242
GlaI	GCGC	4 cut(s)	68, 166, 242, 288
GluI	GCNGC	2 cut(s)	8, 168
GsuI	CTGGAG	1 cut(s)	199
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	2 cut(s)	313, 320
HhaI	GCGC	4 cut(s)	69, 167, 243, 289
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	4 cut(s)	25, 133, 257, 356
Hin6I	GCGC	4 cut(s)	67, 165, 241, 287
HinP1I	GCGC	4 cut(s)	67, 165, 241, 287
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	2 cut(s)	313, 320
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	2 cut(s)	275, 353
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	76, 145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	4 cut(s)	122, 138, 198, 327
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	4 cut(s)	25, 133, 257, 356
HspAI	GCGC	4 cut(s)	67, 165, 241, 287
KasI	GGCGCC	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	2 cut(s)	198, 265
LpnPI	CCDG	7 cut(s)	83, 202, 210, 229, 291, 326, 333
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	1 cut(s)	143
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	1 cut(s)	141
MboII	GAAGA	3 cut(s)	21, 242, 368
MhlI	GDGCHC	2 cut(s)	195, 213
Mly113I	GGCGCC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	7 cut(s)	72, 167, 193, 196, 223, 271, 274
MroXI	GAANNNNTTC	2 cut(s)	131, 234
MspI	CCGG	2 cut(s)	313, 320
MspR9I	CCNGG	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	217
MwoI	GCNNNNNNNGC	1 cut(s)	217
NarI	GGCGCC	1 cut(s)	165
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	4 cut(s)	25, 133, 257, 356
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	46
NsbI	TGCGCA	2 cut(s)	68, 242
NspI	RCATGY	2 cut(s)	25, 133
PaeR7I	CTCGAG	1 cut(s)	275
PagI	TCATGA	1 cut(s)	352
PciI	ACATGT	1 cut(s)	129
PdmI	GAANNNNTTC	2 cut(s)	131, 234
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	2 cut(s)	9, 169
PluTI	GGCGCC	1 cut(s)	168
PscI	ACATGT	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	154
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	195
SatI	GCNGC	2 cut(s)	8, 168
Sau3AI	GATC	1 cut(s)	141
Sau96I	GGNCC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	217
SduI	GDGCHC	2 cut(s)	195, 213
SetI	ASST	5 cut(s)	87, 102, 195, 207, 270
SfoI	GGCGCC	1 cut(s)	166
Sfr274I	CTCGAG	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SsiI	CCGC	1 cut(s)	168
SspDI	GGCGCC	1 cut(s)	164
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	215
TaqI	TCGA	2 cut(s)	144, 276
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	260, 341, 369
XceI	RCATGY	2 cut(s)	25, 133
XhoI	CTCGAG	1 cut(s)	275
XmnI	GAANNNNTTC	2 cut(s)	131, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.