Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0015447

Physical Location & Seq

Genomic Coordinates Reverse (-)

4204880 .. 4206181

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00221430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAGGCTGCTTAGTCACAACATGCTGTCTTCCAACATTAAAGGCGTGACTAACGGGTTTCCTCTGCGAATTGAAGCAGAGAAGGTAGTGGTGAAGGAGGTGGACTTGAACGTCGCTTTCCTGAAGAACATGTTTCCTAAGATCGAGTGGAAGGCCCTTGTAGAGGCTTCTCGTGCAATGGGCTATGCCGAGCTCCCTGAGGAGGTCGAGCCTTCTAAGCTCAATTCTGGGGATTTCCTGCAAAAGTTCCATCATGCCCTTTTGGAGCTTGTTCTTGAGGAGGGTGCTCTTGTTTGCCCTGAAACTGGTCGCCGGTTTCCTGTTTCAAAGGGGATACCAAATATGTTACTTCATGAGGACGAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008213 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018364 GO:0019538 GO:0022613 GO:0030488 GO:0031167 GO:0032259 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0036265 GO:0040007 GO:0042127 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048589 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070475 GO:0070476 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trm112p

Protein Analysis

122

Amino Acids

13.73

Weight (kDa)

5.57

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trm112p	PF03966	6 - 111	6.5e-08	Trm112p-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22270
fragaria_vesca	FvH4_5g37330
malus_domestica	MD08G1182900.v1.1 MD15G1369300.v1.1
prunus_persica	Prupe.1G517100_v2.0.a1
pyrus_communis	pycom08g15670 pycom15g33060
rosa_chinensis	RchiOBHm_Chr7g0238971
rosa_multiflora	Rmu_sc0004132.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221430
rosa_rugosa	Rorug07G0324100
rosa_samantha	Rh7AG479100 Rh7BG451700 Rh7CG496400 Rh7DG463800
rosa_wichuraiana	Rw7G039990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
AcuI	CTGAAG	1 cut(s)	143
AfiI	CCNNNNNNNGG	3 cut(s)	163, 202, 305
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	3 cut(s)	74, 109, 327
AluBI	AGCT	3 cut(s)	193, 220, 268
AluI	AGCT	3 cut(s)	193, 220, 268
Alw21I	GWGCWC	2 cut(s)	195, 289
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	103
AxyI	CCTNAGG	1 cut(s)	198
BanII	GRGCYC	1 cut(s)	195
BauI	CACGAG	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	2 cut(s)	195, 289
BccI	CCATC	1 cut(s)	258
BciVI	GTATCC	1 cut(s)	327
BfuI	GTATCC	1 cut(s)	327
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 202, 305
Bse118I	RCCGGY	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	310
Bse21I	CCTNAGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	3 cut(s)	163, 202, 305
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	2 cut(s)	215, 293
BshFI	GGCC	1 cut(s)	155
BsiHKAI	GWGCWC	2 cut(s)	195, 289
BsiSI	CCGG	1 cut(s)	313
BslI	CCNNNNNNNGG	3 cut(s)	163, 202, 305
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	195, 289
Bsp143I	GATC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	312
BssMI	GATC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	171
BstDEI	CTNAG	4 cut(s)	11, 138, 198, 216
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstKTI	GATC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 217
BstNSI	RCATGY	2 cut(s)	25, 133
BstV2I	GAAGAC	1 cut(s)	21
Bsu36I	CCTNAGG	1 cut(s)	198
BsuI	GTATCC	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	155
CciI	TCATGA	1 cut(s)	352
Cfr10I	RCCGGY	1 cut(s)	312
Cfr13I	GGNCC	1 cut(s)	154
CviAII	CATG	4 cut(s)	22, 130, 254, 353
CviJI	RGCY	8 cut(s)	7, 155, 167, 183, 193, 211, 220, 268
CviKI_1	RGCY	8 cut(s)	7, 155, 167, 183, 193, 211, 220, 268
DdeI	CTNAG	4 cut(s)	11, 138, 198, 216
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	143
Eco81I	CCTNAGG	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	193
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	4 cut(s)	25, 133, 257, 356
FaiI	YATR	6 cut(s)	23, 131, 186, 255, 344, 354
FatI	CATG	4 cut(s)	21, 129, 253, 352
Fnu4HI	GCNGC	1 cut(s)	8
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	8
GluI	GCNGC	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	1 cut(s)	313
Hin1II	CATG	4 cut(s)	25, 133, 257, 356
HpaII	CCGG	1 cut(s)	313
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	368
Hpy188III	TCNNGA	3 cut(s)	121, 275, 353
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	4 cut(s)	76, 88, 145, 222
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	2 cut(s)	176, 241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 217
HpyF3I	CTNAG	4 cut(s)	11, 138, 198, 216
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	4 cut(s)	25, 133, 257, 356
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	2 cut(s)	198, 265
LpnPI	CCDG	8 cut(s)	134, 210, 213, 251, 291, 312, 326, 333
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	3 cut(s)	14, 46, 345
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	2 cut(s)	21, 136
MhlI	GDGCHC	2 cut(s)	195, 289
MluCI	AATT	2 cut(s)	69, 223
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	9 cut(s)	72, 91, 157, 193, 196, 271, 274, 349, 355
MseI	TTAA	1 cut(s)	39
MspI	CCGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	2 cut(s)	173, 217
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	4 cut(s)	25, 133, 257, 356
NmeAIII	GCCGAG	1 cut(s)	214
NmuCI	GTSAC	2 cut(s)	14, 46
NspI	RCATGY	2 cut(s)	25, 133
PagI	TCATGA	1 cut(s)	352
PciI	ACATGT	1 cut(s)	129
PflFI	GACNNNGTC	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	9
PscI	ACATGT	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	154
PsyI	GACNNNGTC	1 cut(s)	362
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	1 cut(s)	141
Sau96I	GGNCC	1 cut(s)	154
SduI	GDGCHC	2 cut(s)	195, 289
SetI	ASST	8 cut(s)	87, 102, 114, 195, 207, 222, 270, 366
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	69, 223
SstI	GAGCTC	1 cut(s)	195
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	144, 207
TasI	AATT	2 cut(s)	69, 223
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseFI	GTSAC	2 cut(s)	14, 46
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	2 cut(s)	14, 46
TspDTI	ATGAA	1 cut(s)	341
Tth111I	GACNNNGTC	1 cut(s)	362
XagI	CCTNNNNNAGG	1 cut(s)	161
XceI	RCATGY	2 cut(s)	25, 133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.