Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0015447

Physical Location & Seq

Genomic Coordinates Reverse (-)

15417118 .. 15417486

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAGGCTGCTAACCCACAACATGCTGTCATCCAACATCAAAGGCGTGACCAACGGCTTCCCTCTGCGCATTGAAATCGAGAAGGTGGTCGAAAAGCAGGTTGAATTCAACCCCGACTTCCTCAAGAACATGTTCCCTAAGATCGAGTGGAAGGCACTTGTCAATGCCTCTCATAGTATGGGATATGTTGAGCTCCCTGAGGAGGTTGAGCCGTCTAGGCTTGATTCTGAAGATTTTCTTCACAAGTTCCATCACGCCCTTTTGGAGCTTCATCTCGAGGAGGGGGCGCTTGTCTGCCCTGAGACTGGTCGCCGCTTTCCAGTTAGTAAGGGCATACCCAATATGCTACTTCATGAAGACGAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008213 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018364 GO:0019538 GO:0022613 GO:0030488 GO:0031167 GO:0032259 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0036265 GO:0040007 GO:0042127 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048589 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070475 GO:0070476 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trm112p

Protein Analysis

123

Amino Acids

14.06

Weight (kDa)

5.45

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trm112p	PF03966	3 - 111	8.5e-10	Trm112p-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22270
fragaria_vesca	FvH4_5g37330
malus_domestica	MD08G1182900.v1.1 MD15G1369300.v1.1
prunus_persica	Prupe.1G517100_v2.0.a1
pyrus_communis	pycom08g15670 pycom15g33060
rosa_chinensis	RchiOBHm_Chr7g0238971
rosa_multiflora	Rmu_sc0004132.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221430
rosa_rugosa	Rorug07G0324100
rosa_samantha	Rh7AG479100 Rh7BG451700 Rh7CG496400 Rh7DG463800
rosa_wichuraiana	Rw7G039990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	68
Acc36I	ACCTGC	1 cut(s)	88
AciI	CCGC	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	202, 305
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	3 cut(s)	74, 104, 109
AluBI	AGCT	2 cut(s)	193, 268
AluI	AGCT	2 cut(s)	193, 268
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	1 cut(s)	104
Asp700I	GAANNNNTTC	2 cut(s)	131, 234
AspLEI	GCGC	2 cut(s)	69, 289
AvaI	CYCGRG	1 cut(s)	275
AxyI	CCTNAGG	1 cut(s)	198
BanII	GRGCYC	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	195
BccI	CCATC	1 cut(s)	258
BceAI	ACGGC	2 cut(s)	70, 196
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	88
BglI	GCCNNNNNGGC	1 cut(s)	217
BisI	GCNGC	2 cut(s)	8, 313
BlsI	GCNGC	2 cut(s)	9, 314
BmeT110I	CYCGRG	1 cut(s)	275
BpiI	GAAGAC	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 305
Bse1I	ACTGG	2 cut(s)	310, 320
Bse21I	CCTNAGG	1 cut(s)	198
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	2 cut(s)	202, 305
BseMII	CTCAG	2 cut(s)	189, 291
BseNI	ACTGG	2 cut(s)	310, 320
BseRI	GAGGAG	2 cut(s)	215, 293
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	202, 305
BsmAI	GTCTC	1 cut(s)	296
BsoBI	CYCGRG	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	141
BspACI	CCGC	1 cut(s)	313
BspCNI	CTCAG	2 cut(s)	190, 292
BspHI	TCATGA	1 cut(s)	352
BspMI	ACCTGC	1 cut(s)	88
BsrI	ACTGG	2 cut(s)	310, 320
BssMI	GATC	1 cut(s)	141
BstDEI	CTNAG	3 cut(s)	138, 198, 300
BstF5I	GGATG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	2 cut(s)	69, 289
BstKTI	GATC	1 cut(s)	144
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNSI	RCATGY	2 cut(s)	25, 133
BstV2I	GAAGAC	1 cut(s)	363
Bsu36I	CCTNAGG	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	88
CciI	TCATGA	1 cut(s)	352
CfoI	GCGC	2 cut(s)	69, 289
CviAII	CATG	3 cut(s)	22, 130, 353
CviJI	RGCY	6 cut(s)	7, 57, 193, 211, 220, 268
CviKI_1	RGCY	6 cut(s)	7, 57, 193, 211, 220, 268
DdeI	CTNAG	3 cut(s)	138, 198, 300
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	249
Eco81I	CCTNAGG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	3 cut(s)	25, 133, 356
FaiI	YATR	8 cut(s)	23, 131, 174, 179, 186, 335, 344, 354
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FatI	CATG	3 cut(s)	21, 129, 352
Fnu4HI	GCNGC	2 cut(s)	8, 313
FokI	GGATG	1 cut(s)	16
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	2 cut(s)	8, 313
FspBI	CTAG	1 cut(s)	216
FspI	TGCGCA	1 cut(s)	68
GlaI	GCGC	2 cut(s)	68, 288
GluI	GCNGC	2 cut(s)	8, 313
HaeII	RGCGCY	1 cut(s)	290
HhaI	GCGC	2 cut(s)	69, 289
Hin1II	CATG	3 cut(s)	25, 133, 356
Hin6I	GCGC	2 cut(s)	67, 287
HinP1I	GCGC	2 cut(s)	67, 287
HinfI	GANTC	1 cut(s)	224
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	4 cut(s)	79, 124, 275, 353
HpyAV	CCTTC	2 cut(s)	76, 145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	3 cut(s)	138, 198, 300
Hsp92II	CATG	3 cut(s)	25, 133, 356
HspAI	GCGC	2 cut(s)	67, 287
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	2 cut(s)	198, 265
LpnPI	CCDG	5 cut(s)	83, 210, 291, 312, 333
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	3 cut(s)	230, 242, 368
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	7 cut(s)	72, 131, 178, 193, 196, 271, 274
MroXI	GAANNNNTTC	2 cut(s)	131, 234
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	3 cut(s)	25, 133, 356
NmuCI	GTSAC	1 cut(s)	46
NsbI	TGCGCA	1 cut(s)	68
NspI	RCATGY	2 cut(s)	25, 133
PaeR7I	CTCGAG	1 cut(s)	275
PagI	TCATGA	1 cut(s)	352
PciI	ACATGT	1 cut(s)	129
PdmI	GAANNNNTTC	2 cut(s)	131, 234
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	2 cut(s)	9, 314
PscI	ACATGT	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	195
SacI	GAGCTC	1 cut(s)	195
SatI	GCNGC	2 cut(s)	8, 313
Sau3AI	GATC	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	5 cut(s)	87, 102, 195, 207, 270
Sfr274I	CTCGAG	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	275
SmlI	CTYRAG	2 cut(s)	122, 275
SmoI	CTYRAG	2 cut(s)	122, 275
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	1 cut(s)	216
SstI	GAGCTC	1 cut(s)	195
TaqI	TCGA	4 cut(s)	78, 90, 144, 276
TasI	AATT	1 cut(s)	104
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	260, 341, 369
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	2 cut(s)	25, 133
XhoI	CTCGAG	1 cut(s)	275
XmnI	GAANNNNTTC	2 cut(s)	131, 234
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.